Carg07056-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07056-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_065 : 1178818 .. 1180638 (+)
Sequence length	1715

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGGTAATTGATTTTAAGATCTATCAATGGATTCAACTTGTTTTGAACTTTTACATCTTTTTCGAGATGCTTTATGGGATCTGATGTTTTCTATTTCGTTTTCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGTTTTCTTTACGTTATCTTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAATTGTTTTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTTTTTCAATCGAGTTTTATAATCTTTCTTGTGTTCTTCTGCGATAATAGGTTTATTATTTAGCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTCTATTATCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGATTGAATTATGTAGCTGATAAAGAAGTTTCCAGGGCTTTTAGATTCGATTACATTCCTTATAGATTATTATTGCATTGCAATGCATTTTGATCAAAACTAACCATTTGATTGTTTGGAGGAAGTTTTCCATAGCTCAATAAACTAGAATGTAGGAATTTAGGACGGTAAAAGGATTTAGGATATTTGTCCAAAGCTCAATGAACCAAAATGTAGGAATTTAGGATACCTGGATTCGTGGGGGAGTGGATACCAAAAAGGATCATCTGTTGAATATTTGATTCTTATTTTTGATAGAATCAATTGTTTGGTTCCTTGGGGTCAATTTAATCACTTTATTTTGATAGCTAAGATTATTTAGGCTGTTATGCCATTTTCCTTAAACTGTGGTAGGAGTAGTAGTTAAGAAAAAAGGTTTGGTGTTCTACCTTTGGCTTGTCTCAGTCCATAGTGATAGGCTCTGCACCTGAGCCTCGTTAGACTCAGCGGAAGTGTAAGGTGCAAGTCAAGAGAATAGAAGAAGAGATTCTGTCTGTCCTTTAGCCTTTCTCCTGTATAGTGTTGGAAGGTAGGCGTGAATAAGTTGCAATAAGCATAGGATTGATTATGTATAGAACTTTCCATTCAATCATTCATATTACATCCCTTTTCTGAATGTGGTCTGCTGCAATGTTGATTCTTACAAGTGCTGTTACCTATAACTTATCACCAAAGAACTCTATTTTCTTTGATTAAGCTGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCACCTGCATACTGAAAAGATTCCGAGTGTTATTGTTGAGCATCATAAAATGTGATTAGATAGTACGTCTTTGTAGCTTACCTGGTGCACCCTGTAAGCGAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGGGTTTCGTTCAATTGTACCTCTTTTGTTATCCTCCGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTCATTTTTATGTTCTCTAGTCTAGAAGGTGCGACCTTTGTTTGGGGAGGTTTGTGGTTACCTCCACAATAGTATGATATTGTCCACTTTTAGCATAAACTTATGATTTTACTTTTGGTTTTACTTAAAAGGCCTCATATCAATGGAGATAGGGGTTCTTACG

mRNA sequence

GATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGTTTTCTTTACGTTATCTTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAATTGTTTTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTTTTTCAATCGAGTTTTATAATCTTTCTTGTGTTCTTCTGCGATAATAGGTTTATTATTTAGCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTCTATTATCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGATTGAATTATGTAGCTGATAAAGAAGTTTCCAGGGCTTTTAGATTCGATTACATTCCTTATAGATTATTATTGCATTGCAATGCATTTTGATCAAAACTAACCATTTGATTGTTTGGAGGAAGTTTTCCATAGCTCAATAAACTAGAATGTAGGAATTTAGGACGGTAAAAGGATTTAGGATATTTGTCCAAAGCTCAATGAACCAAAATGTAGGAATTTAGGATACCTGGATTCGTGGGGGAGTGGATACCAAAAAGGATCATCTGTTGAATATTTGATTCTTATTTTTGATAGAATCAATTGTTTGGTTCCTTGGGGTCAATTTAATCACTTTATTTTGATAGCTAAGATTATTTAGGCTGTTATGCCATTTTCCTTAAACTGTGGTAGGAGTAGTAGTTAAGAAAAAAGGTTTGGTGTTCTACCTTTGGCTTGTCTCAGTCCATAGTGATAGGCTCTGCACCTGAGCCTCGTTAGACTCAGCGGAAGTGTAAGGTGCAAGTCAAGAGAATAGAAGAAGAGATTCTGTCTGTCCTTTAGCCTTTCTCCTGTATAGTGTTGGAAGGTAGGCGTGAATAAGTTGCAATAAGCATAGGATTGATTATGTATAGAACTTTCCATTCAATCATTCATATTACATCCCTTTTCTGAATGTGGTCTGCTGCAATGTTGATTCTTACAAGTGCTGTTACCTATAACTTATCACCAAAGAACTCTATTTTCTTTGATTAAGCTGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCACCTGCATACTGAAAAGATTCCGAGTGTTATTGTTGAGCATCATAAAATGTGATTAGATAGTACGTCTTTGTAGCTTACCTGGTGCACCCTGTAAGCGAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGGGTTTCGTTCAATTGTACCTCTTTTGTTATCCTCCGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTCATTTTTATGTTCTCTAGTCTAGAAGGTGCGACCTTTGTTTGGGGAGGTTTGTGGTTACCTCCACAATAGTATGATATTGTCCACTTTTAGCATAAACTTATGATTTTACTTTTGGTTTTACTTAAAAGGCCTCATATCAATGGAGATAGGGGTTCTTACG

Coding sequence (CDS)

ATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAG

Protein sequence

MRAKWKKKRMRRLKRKRRKMRQRSK

Homology

The following BLAST results are available for this feature:

BLAST of Carg07056-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07056-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07056-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07056-RA vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007836	Ribosomal_L41

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg07056	Carg07056	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg07056-RA	Carg07056-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07056-RA.exon.1	Carg07056-RA.exon.1	exon
Carg07056-RA.exon.2	Carg07056-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07056-RA.five_prime_UTR.1	Carg07056-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07056-RA.CDS.1	Carg07056-RA.CDS.1	CDS
Carg07056-RA.CDS.2	Carg07056-RA.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07056-RA.three_prime_UTR.1	Carg07056-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR007836	Ribosomal protein L41	PFAM	PF05162	Ribosomal_L41	coord: 1..25 e-value: 5.2E-12 score: 45.5