Carg07056 (gene) Silver-seed gourd

NameCarg07056
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_065 : 1178818 .. 1180638 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGGTAATTGATTTTAAGATCTATCAATGGATTCAACTTGTTTTGAACTTTTACATCTTTTTCGAGATGCTTTATGGGATCTGATGTTTTCTATTTCGTTTTCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGTTTTCTTTACGTTATCTTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAATTGTTTTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTTTTTCAATCGAGTTTTATAATCTTTCTTGTGTTCTTCTGCGATAATAGGTTTATTATTTAGCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTCTATTATCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGATTGAATTATGTAGCTGATAAAGAAGTTTCCAGGGCTTTTAGATTCGATTACATTCCTTATAGATTATTATTGCATTGCAATGCATTTTGATCAAAACTAACCATTTGATTGTTTGGAGGAAGTTTTCCATAGCTCAATAAACTAGAATGTAGGAATTTAGGACGGTAAAAGGATTTAGGATATTTGTCCAAAGCTCAATGAACCAAAATGTAGGAATTTAGGATACCTGGATTCGTGGGGGAGTGGATACCAAAAAGGATCATCTGTTGAATATTTGATTCTTATTTTTGATAGAATCAATTGTTTGGTTCCTTGGGGTCAATTTAATCACTTTATTTTGATAGCTAAGATTATTTAGGCTGTTATGCCATTTTCCTTAAACTGTGGTAGGAGTAGTAGTTAAGAAAAAAGGTTTGGTGTTCTACCTTTGGCTTGTCTCAGTCCATAGTGATAGGCTCTGCACCTGAGCCTCGTTAGACTCAGCGGAAGTGTAAGGTGCAAGTCAAGAGAATAGAAGAAGAGATTCTGTCTGTCCTTTAGCCTTTCTCCTGTATAGTGTTGGAAGGTAGGCGTGAATAAGTTGCAATAAGCATAGGATTGATTATGTATAGAACTTTCCATTCAATCATTCATATTACATCCCTTTTCTGAATGTGGTCTGCTGCAATGTTGATTCTTACAAGTGCTGTTACCTATAACTTATCACCAAAGAACTCTATTTTCTTTGATTAAGCTGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCACCTGCATACTGAAAAGATTCCGAGTGTTATTGTTGAGCATCATAAAATGTGATTAGATAGTACGTCTTTGTAGCTTACCTGGTGCACCCTGTAAGCGAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGGGTTTCGTTCAATTGTACCTCTTTTGTTATCCTCCGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTCATTTTTATGTTCTCTAGTCTAGAAGGTGCGACCTTTGTTTGGGGAGGTTTGTGGTTACCTCCACAATAGTATGATATTGTCCACTTTTAGCATAAACTTATGATTTTACTTTTGGTTTTACTTAAAAGGCCTCATATCAATGGAGATAGGGGTTCTTACG

mRNA sequence

GATTCTCCGGTGTCCAACCTTCTTCCTTCAGCCGTTCGTTTGCATTTGGAGACGAGCCATTATTCACTGAGAGCAGTCGGACTTTTTTCGCCGCGTCGCCATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCATTGTCTGAGGGATGGTTTCGACCTAGGGTTTTGGTTACTGTTTAGTTTTCTTTACGTTATCTTTAGTTTTTTATTTTATTGTTTGACCGTTTTGAATTGTTTTTAATTGCTATGTGATCGATACATTTAGTTGTTTTAATCGAGAACTGGATTTCCAGCTTTATAGTTTTTTTCAATCGAGTTTTATAATCTTTCTTGTGTTCTTCTGCGATAATAGGTTTATTATTTAGCTTTTGGCTGCTAGATTAGGATTCTTTGATATATATTATCTGTGTCTATTATCTTTAAACATGAGCCGTTGCCAAACTTCTGAAGGTGTTTCAATTTGGAATTATTGGTGATTGAATTATGTAGCTGATAAAGAAGTTTCCAGGGCTTTTAGATTCGATTACATTCCTTATAGATTATTATTGCATTGCAATGCATTTTGATCAAAACTAACCATTTGATTGTTTGGAGGAAGTTTTCCATAGCTCAATAAACTAGAATGTAGGAATTTAGGACGGTAAAAGGATTTAGGATATTTGTCCAAAGCTCAATGAACCAAAATGTAGGAATTTAGGATACCTGGATTCGTGGGGGAGTGGATACCAAAAAGGATCATCTGTTGAATATTTGATTCTTATTTTTGATAGAATCAATTGTTTGGTTCCTTGGGGTCAATTTAATCACTTTATTTTGATAGCTAAGATTATTTAGGCTGTTATGCCATTTTCCTTAAACTGTGGTAGGAGTAGTAGTTAAGAAAAAAGGTTTGGTGTTCTACCTTTGGCTTGTCTCAGTCCATAGTGATAGGCTCTGCACCTGAGCCTCGTTAGACTCAGCGGAAGTGTAAGGTGCAAGTCAAGAGAATAGAAGAAGAGATTCTGTCTGTCCTTTAGCCTTTCTCCTGTATAGTGTTGGAAGGTAGGCGTGAATAAGTTGCAATAAGCATAGGATTGATTATGTATAGAACTTTCCATTCAATCATTCATATTACATCCCTTTTCTGAATGTGGTCTGCTGCAATGTTGATTCTTACAAGTGCTGTTACCTATAACTTATCACCAAAGAACTCTATTTTCTTTGATTAAGCTGCAGCCCAACTTGCTTCATTCCTTCAAAAGCCACTATAGCTTCCGAATCAAAACCACCTGCATACTGAAAAGATTCCGAGTGTTATTGTTGAGCATCATAAAATGTGATTAGATAGTACGTCTTTGTAGCTTACCTGGTGCACCCTGTAAGCGAAGCGAACCCCTTGAAGAAAAAGGTTTTCTGTTTGTGGGGTTTCGTTCAATTGTACCTCTTTTGTTATCCTCCGCATGCATTCCTTCACTAGCCTCAATGAGCTCAGCTTCATCTGCAACCAATTGTGTTTTACAGTTTTTCATTTTTATGTTCTCTAGTCTAGAAGGTGCGACCTTTGTTTGGGGAGGTTTGTGGTTACCTCCACAATAGTATGATATTGTCCACTTTTAGCATAAACTTATGATTTTACTTTTGGTTTTACTTAAAAGGCCTCATATCAATGGAGATAGGGGTTCTTACG

Coding sequence (CDS)

ATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAG

Protein sequence

MRAKWKKKRMRRLKRKRRKMRQRSK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR007836Ribosomal_L41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07056-RACarg07056-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR007836Ribosomal protein L41PFAMPF05162Ribosomal_L41coord: 1..25
e-value: 5.2E-12
score: 45.5