Carg06262-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06262-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box domain containing protein
Location	Cucurbita_argyrosperma_scaffold_016 : 556887 .. 559934 (+)
Sequence length	822

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTACTCTACGTTAATCGCCGAGCGTTCATCCTCTTCCAAATTCTTCTCCTTTGATCCTTTCTTTGTCTCTCCAGCTTTGAATTCATGGCGCATAGCGGCTTACTCGGAGGCGGAATGCGGTGGAAAACAAGGAAGAAAATGCGAGAGAATGTCTCCGATGAACGAGGCCAACAAAATGGAACCCTAAGTGTTCTTCTCCAAGACCCTTTCGAGGTTTTGGGTTCTGATCTATTAATGGCGATTCTTGGCTACGTTGATTCACGCAGCGTGGCACTTTCTCTTCTTGTCTCTCGATCCTGGTATGGAATTGCTTCCAGCGATTCCCTATGGAGTTCTAAGGTGTGCATCTTTACTCTCATTAATTCGTTGATCTTATGGTGCTTTTGATTTTGTTCGATTCTCTGGAATTGGATTTTGTATTTGATTTTTTCATTGGTCTTAGTAATTCCAGTGCTAATCGAGTCGATTCGCTCGTTTTTGCTTATAGAAATACGTTCATCTGTTGTAGAATGGGGTTTTGGAATCCTATGACTTCCATTCTTTTGTGTAATATTTTCTCACATCGGGATTTGAATCTTAAATTTATGAACTGTCTCTTTTCTACTTTGATGGATCATCACGAACTGCATATAAGAAGTGCTTTCACTCCAAACCACTTTGTACAAAAGCCATTATTAGGTACTGAATCTTGTCGTCATAAGATCCTTTAGAGAAATACTGAAACGGCCCAAGCCCATCGCTAACAGATATTGCCAGCTACTTTTCCTATCATACTTCCCTTCAAGCTTTTTAAAACACGTATGCTAGGGAGAGATTTCCACACCCTTATAAAAAAAAATGTTTGTTCTCCTCCCAAACCAATGTGGGATCTCACAATCCACCCTCTCGTCCTCGCTAGTACTCGTTCTCTTCTCCAATCGATGTGGGACCCCTAATTCACCCCCTTTGGGGCCCAGCGTCCTTGCTGGCACACTGCTGTCCACTCCCTTCGGGGCTCAACCTCCTCGCTGGCACATCACTCGGTGTCTAGCTTTGATACCATTTGTAACAGCCCAAACCTGTTAACCGTAAATTTATGTGACTTTGCAAAGATACCAAAAATGATCATTTGTTATTGATAGGGTCCAATGCTTTTTATAGAAAAAATACATAAAAACTAATAACAAGAAAACTAACTGACAAACTCAACTAATAACAAGAAAAACTAACTAATAGAAATTTGCTACCTCAACAAAACCCACCGTTAGATATTGTCCTCTTTGGATTTTCTCTTTCAGGCTTCCCCTCAAGATTTTTAAAACGTGTCTGCTAGGGGGAGGTTTCCATGCTATTATAAAGAACGTTTCATTCTCCTCCCTAACTGACATGGGATCTCACACCATTCATGGTTATGCATAAGCATAAGGGATTGCAATGACTGCTTGCCATGTCTTATCTTATTTGACACTGGGATAGATGATACAAAATTCTACAAACTTGTTAAAATGGTGTAGCAAACAAAAAAAAAAAACTTGCATTTCACTGTATAATTGAACATTTGGTAAACAATTTTATCGTGATTTCTCTTAGTGTGTGGAACTGTGGCTTGGGAAAGCACATATCCCTAGATTGGCGCAAACCCGAGGTCTTCCAAAGATGGCTGCCTATTCATTATCTGTCATGGATGGCAATCGGGTTAGTCTCTCTCTCCATCCCTCCACCCCCAACATATATGTATATATACGTTCTTTATGTATGATTCTGTGATCCCACATGCATCTACTGCTTGTCATCAATGATTCGAAAAAAGAATATGGTCTACTTCTACACATATACTCCCAACACATGGGAGAATGAGGAGCGGGTATTACTTGGCTATCGTTTTTTATAGGTTTATATTGTTGTGTCAGACTCGCATTATGAGGGAGGATTTATGTGACCACGCTTGGCAATTTCACTTCAATAAGGTATGGCTGTCTTTTATTTTAGGACATTAACCTTCATGTAATGAACTAAATGACGTGCAACCTGGTTAGGAGACATACATTGAAGTCCTAAATTAACTGTATGAAATTCTGTTACATGATGATTGTGTTTTATGATTGATCAAATCTGGTTATGTTATAAACATCATTTGACCACTTCTAAGCATTTTACAGAGATTCATGCTGTCTACATCTAATATTTTTTCCTTTTATTAGTTGCACATAAACTATTTATTCCCATCTGGAAATTTGAAAATGTAACAGCGCACACGATTAGCTGCAAGAGAGGTTAGATGCCCGATGATGGATGTTTTAGTAATACAAATTTCATGAACGATGTTCACAATTTGAGAGCCATGCTAGTGATTATGTTATAAATCATCTAACATGCACAAAAAGCTCGTTGGACTTGGAAGCCCATGAAGCATGGGTACTTTAGTTTAGGCAATGTGTCTGTGTCTGACATGTGCCACCACATCCGTGTTGTGTCGTGTTCGTGAATTACTTGCTCTCGGAATGTCTATGTTGATGCTCACAGTTCTGATAGCACGGTGAGGTAAAGGGGATGTCTCGGTAAGTGTTTAGCACCTAAATTCATTTTTACAAATGCAATTGTGTGTGGTTAAAAACATATCATGCTCTAGCTGGTTTCAAAACAATCTACCAATTTTGTGCTTGCATGCCAATGTATCTCATTAAGGAACCTTTCTGATGGGGTAAGTTGGTTCATAATGGCAGATAAATTAATTTCCATTCCTCTCAGGAAGCTCCTGTTTACTGGCGAGATCTTGATCCGTATTGGCAAGGTAGCCACCTTCTCATGCGCCGTTATTTCCACCCCGATGGGAGCCAAACTGCAGATCCTGATGACAGAGTATGGGGTGGCCATGAATGCTGCTTTTCCACTGTAACCACCATTGTTGGTGATGGGAAGATCAGAGAACACTATGTGAGGATTAACAAATGGCCAAGGATGTTGGTGTCGAGGAATGAAGATTGGAGCTGGGAGATGTCGAATCACTTCACTTCGTACTCGAGCATAGCTGATGCTGAGAAGGACGGTGGGACAGGGCCACTTTAA

mRNA sequence

AAATTACTCTACGTTAATCGCCGAGCGTTCATCCTCTTCCAAATTCTTCTCCTTTGATCCTTTCTTTGTCTCTCCAGCTTTGAATTCATGGCGCATAGCGGCTTACTCGGAGGCGGAATGCGGTGGAAAACAAGGAAGAAAATGCGAGAGAATGTCTCCGATGAACGAGGCCAACAAAATGGAACCCTAAGTGTTCTTCTCCAAGACCCTTTCGAGGTTTTGGGTTCTGATCTATTAATGGCGATTCTTGGCTACGTTGATTCACGCAGCGTGGCACTTTCTCTTCTTGTCTCTCGATCCTGGTATGGAATTGCTTCCAGCGATTCCCTATGGAGTTCTAAGTGTGTGGAACTGTGGCTTGGGAAAGCACATATCCCTAGATTGGCGCAAACCCGAGGTCTTCCAAAGATGGCTGCCTATTCATTATCTGTCATGGATGGCAATCGGACTCGCATTATGAGGGAGGATTTATGTGACCACGCTTGGCAATTTCACTTCAATAAGGAAGCTCCTGTTTACTGGCGAGATCTTGATCCGTATTGGCAAGGTAGCCACCTTCTCATGCGCCGTTATTTCCACCCCGATGGGAGCCAAACTGCAGATCCTGATGACAGAGTATGGGGTGGCCATGAATGCTGCTTTTCCACTGTAACCACCATTGTTGGTGATGGGAAGATCAGAGAACACTATGTGAGGATTAACAAATGGCCAAGGATGTTGGTGTCGAGGAATGAAGATTGGAGCTGGGAGATGTCGAATCACTTCACTTCGTACTCGAGCATAGCTGATGCTGAGAAGGACGGTGGGACAGGGCCACTTTAA

Coding sequence (CDS)

ATGGCGCATAGCGGCTTACTCGGAGGCGGAATGCGGTGGAAAACAAGGAAGAAAATGCGAGAGAATGTCTCCGATGAACGAGGCCAACAAAATGGAACCCTAAGTGTTCTTCTCCAAGACCCTTTCGAGGTTTTGGGTTCTGATCTATTAATGGCGATTCTTGGCTACGTTGATTCACGCAGCGTGGCACTTTCTCTTCTTGTCTCTCGATCCTGGTATGGAATTGCTTCCAGCGATTCCCTATGGAGTTCTAAGTGTGTGGAACTGTGGCTTGGGAAAGCACATATCCCTAGATTGGCGCAAACCCGAGGTCTTCCAAAGATGGCTGCCTATTCATTATCTGTCATGGATGGCAATCGGACTCGCATTATGAGGGAGGATTTATGTGACCACGCTTGGCAATTTCACTTCAATAAGGAAGCTCCTGTTTACTGGCGAGATCTTGATCCGTATTGGCAAGGTAGCCACCTTCTCATGCGCCGTTATTTCCACCCCGATGGGAGCCAAACTGCAGATCCTGATGACAGAGTATGGGGTGGCCATGAATGCTGCTTTTCCACTGTAACCACCATTGTTGGTGATGGGAAGATCAGAGAACACTATGTGAGGATTAACAAATGGCCAAGGATGTTGGTGTCGAGGAATGAAGATTGGAGCTGGGAGATGTCGAATCACTTCACTTCGTACTCGAGCATAGCTGATGCTGAGAAGGACGGTGGGACAGGGCCACTTTAA

Protein sequence

MAHSGLLGGGMRWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLLMAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEKDGGTGPL

Homology

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BLAST of Carg06262-RA vs. NCBI nr
Match: XP_023539867.1 (uncharacterized protein LOC111800413 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 505.8 bits (1301), Expect = 8.5e-140
Identity = 237/244 (97.13%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLLMAILGYVDSR 60
           MAHSGLLGGG+RWKTRKKMRENVSDERGQQNGTL+VLLQDPFEVLGSDLLMAILGYVDSR
Sbjct: 1   MAHSGLLGGGIRWKTRKKMRENVSDERGQQNGTLNVLLQDPFEVLGSDLLMAILGYVDSR 60

Query: 61  SVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR 120
           SVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR
Sbjct: 61  SVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR 120

Query: 121 TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGG 180
           TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLM RYFH DG+QTADPDDRVWGG
Sbjct: 121 TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMCRYFHLDGNQTADPDDRVWGG 180

Query: 181 HECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEKDGG 240
           HECCFSTVTTI+GDGKIREHYVRIN+WPRMLVSRNEDWSWEMSNHFTSYSSIADAEKDGG
Sbjct: 181 HECCFSTVTTIIGDGKIREHYVRINRWPRMLVSRNEDWSWEMSNHFTSYSSIADAEKDGG 240

Query: 241 TGPL 245
           TGPL
Sbjct: 241 TGPL 244

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BLAST of Carg06262-RA vs. NCBI nr
Match: XP_022974484.1 (uncharacterized protein LOC111473162 [Cucurbita maxima])

HSP 1 Score: 492.7 bits (1267), Expect = 7.4e-136
Identity = 233/244 (95.49%), Postives = 236/244 (96.72%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLLMAILGYVDSR 60
           MAH GLLG  +RWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLL+AILGYVDSR
Sbjct: 1   MAHCGLLGAEIRWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLLLAILGYVDSR 60

Query: 61  SVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR 120
           SVALSLLVSRSWY IASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR
Sbjct: 61  SVALSLLVSRSWYRIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR 120

Query: 121 TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGG 180
           TRIMREDLCDHAW+FHFNKEAPVYWRDLDPYWQGSH LMRRYFH DGSQTADPDDRVWGG
Sbjct: 121 TRIMREDLCDHAWKFHFNKEAPVYWRDLDPYWQGSHHLMRRYFHLDGSQTADPDDRVWGG 180

Query: 181 HECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEKDGG 240
           HECCFSTVTTIV DGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSI DAEKDGG
Sbjct: 181 HECCFSTVTTIVSDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIPDAEKDGG 240

Query: 241 TGPL 245
           TGPL
Sbjct: 241 TGPL 244

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BLAST of Carg06262-RA vs. NCBI nr
Match: XP_022944409.1 (uncharacterized protein LOC111448835 [Cucurbita moschata])

HSP 1 Score: 437.2 bits (1123), Expect = 3.7e-119
Identity = 204/209 (97.61%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTRKKMRENVSDERGQQNGTLSVLLQDPFEVLGSDLLMAILGYVDSR 60
           MAHSGLLGGG+RWKTRKKMRENVSDERGQQNGTL+VLLQDPFEVLGSDLLMAILGYVDSR
Sbjct: 1   MAHSGLLGGGIRWKTRKKMRENVSDERGQQNGTLTVLLQDPFEVLGSDLLMAILGYVDSR 60

Query: 61  SVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGNR 120
           SVALSLLVSRSWYGIASSDSLWSSKCVELWLG AHIPRLAQTRGLPKMAAYSLSVMDGNR
Sbjct: 61  SVALSLLVSRSWYGIASSDSLWSSKCVELWLGIAHIPRLAQTRGLPKMAAYSLSVMDGNR 120

Query: 121 TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGG 180
           TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGG
Sbjct: 121 TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGG 180

Query: 181 HECCFSTVTTIVGDGKIREHYVRINKWPR 210
           HECCFSTVTT+VGDGKIREHYVRINKWP+
Sbjct: 181 HECCFSTVTTVVGDGKIREHYVRINKWPK 209

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BLAST of Carg06262-RA vs. NCBI nr
Match: XP_004134023.1 (PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus] >KGN56785.1 hypothetical protein Csa_3G133360 [Cucumis sativus])

HSP 1 Score: 436.8 bits (1122), Expect = 4.8e-119
Identity = 207/247 (83.81%), Postives = 220/247 (89.07%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTR--KKMRENVSDERGQQNG-TLSVLLQDPFEVLGSDLLMAILGYV 60
           MA S  LGGG RWK+R      E VSDERGQQN  T + LLQDPFEVLGSDLL+AIL Y+
Sbjct: 1   MAQSDFLGGGARWKSRXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMD 120
           D+RSVALSL VSRSWY +ASSD LWSSKC+ELWLGKAHIPRLAQ+RGLPK+AAYSLSVMD
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAAYSLSVMD 120

Query: 121 GNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRV 180
           G RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDG+QTADPDDRV
Sbjct: 121 GKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQTADPDDRV 180

Query: 181 WGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEK 240
           WGGHE CFSTVT+ VGDG+IREHYVRIN+WPRM VSRNEDWSW MSNHFTSYSSIAD EK
Sbjct: 181 WGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPEK 240

Query: 241 DGGTGPL 245
            GGTGPL
Sbjct: 241 TGGTGPL 247

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BLAST of Carg06262-RA vs. NCBI nr
Match: XP_022157958.1 (uncharacterized protein LOC111024557 isoform X1 [Momordica charantia])

HSP 1 Score: 429.1 bits (1102), Expect = 1.0e-116
Identity = 203/246 (82.52%), Postives = 218/246 (88.62%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTRKKMR-ENVSDERGQQNGTLSVLLQDPFEVLGSDLLMAILGYVDS 60
           M  +  LGGG  WKTRKK + ENVSDER  +NG+ +VLLQDP +VLG DLLMAILGYVD+
Sbjct: 26  MVQTDGLGGGAHWKTRKKKKPENVSDERRLENGSENVLLQDPLQVLGPDLLMAILGYVDA 85

Query: 61  RSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMDGN 120
           RSVALSLLVSRSWY +ASSD LWSSKCVELWLGKAHIPRLA  +GLP +AAYSLSVMDG 
Sbjct: 86  RSVALSLLVSRSWYAVASSDRLWSSKCVELWLGKAHIPRLAYIQGLPYLAAYSLSVMDGK 145

Query: 121 RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWG 180
           RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGS  LMRRYFHPDGSQTADPDDRVWG
Sbjct: 146 RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSRPLMRRYFHPDGSQTADPDDRVWG 205

Query: 181 GHECCFSTVTTIVG-DGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEKD 240
           GHECCFS VT+  G DGKIREHYVRIN+WPRMLVSRNEDWSW++SN   SYSSIADA+KD
Sbjct: 206 GHECCFSVVTSFAGDDGKIREHYVRINRWPRMLVSRNEDWSWKLSNQLASYSSIADADKD 265

Query: 241 GGTGPL 245
           GGTGPL
Sbjct: 266 GGTGPL 271

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BLAST of Carg06262-RA vs. TrEMBL
Match: tr|A0A0A0L471|A0A0A0L471_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 3.2e-119
Identity = 207/247 (83.81%), Postives = 220/247 (89.07%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTR--KKMRENVSDERGQQNG-TLSVLLQDPFEVLGSDLLMAILGYV 60
           MA S  LGGG RWK+R      E VSDERGQQN  T + LLQDPFEVLGSDLL+AIL Y+
Sbjct: 1   MAQSDFLGGGARWKSRXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAAYSLSVMD 120
           D+RSVALSL VSRSWY +ASSD LWSSKC+ELWLGKAHIPRLAQ+RGLPK+AAYSLSVMD
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAAYSLSVMD 120

Query: 121 GNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRV 180
           G RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDG+QTADPDDRV
Sbjct: 121 GKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQTADPDDRV 180

Query: 181 WGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYSSIADAEK 240
           WGGHE CFSTVT+ VGDG+IREHYVRIN+WPRM VSRNEDWSW MSNHFTSYSSIAD EK
Sbjct: 181 WGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPEK 240

Query: 241 DGGTGPL 245
            GGTGPL
Sbjct: 241 TGGTGPL 247

[Close]

BLAST of Carg06262-RA vs. TrEMBL
Match: tr|A0A1S3AWZ4|A0A1S3AWZ4_CUCME (uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483521 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 4.9e-112
Identity = 196/254 (77.17%), Postives = 209/254 (82.28%), Query Frame = 0


Query: 1   MAHSGLLGGGMRWKTRKKMRENVSDERG----------QQNGTLSVLLQDPFEVLGSDLL 60
           MA S  L GG RWKT                       Q   T + +LQDPFEVLGSDLL
Sbjct: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPRLAQTRGLPKMAA 120
           M IL Y+D+RSVALSLLVSRSWY +ASSD LWSSKC+ELWLGKAHIPRLAQ+RGLPK+AA
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKCLELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 YSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQT 180
           YSLS+MDG RTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDGSQT
Sbjct: 121 YSLSIMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180

Query: 181 ADPDDRVWGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDWSWEMSNHFTSYS 240
           ADPDDRVWGGHE CFSTVT+ VGDG+IREHYVRIN+WPRM VSRNEDWSW MSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

Query: 241 SIADAEKDGGTGPL 245
           SIAD +K GGTGPL
Sbjct: 241 SIADPDKAGGTGPL 254

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BLAST of Carg06262-RA vs. TrEMBL
Match: tr|A0A1R3KQ13|A0A1R3KQ13_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_05738 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 2.2e-91
Identity = 151/206 (73.30%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 39  QDPFEVLGSDLLMAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPR 98
           +DP EV G D++M IL  +D+RSVALSLLVSR+W+G+ASSDSLWSSKC ELW GKAHIPR
Sbjct: 13  RDPLEVFGRDIMMKILSNLDARSVALSLLVSRAWHGVASSDSLWSSKCEELWHGKAHIPR 72

Query: 99  LAQTRGLPKMAAYSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLL 158
            +Q RGL K+AAYS+SVMDG R RIM++DLCDH W+FHFNK AP YWR+LDPYW+G+  L
Sbjct: 73  ASQVRGLSKLAAYSISVMDGKRARIMKDDLCDHVWEFHFNKAAPEYWRNLDPYWKGTSPL 132

Query: 159 MRRYFHPDGSQTADPDDRVWGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDW 218
           MRRYFHPDGSQTADP D+VWGGHECC+S VT+I+G+GKIR HYVRIN+WP+M VSRN DW
Sbjct: 133 MRRYFHPDGSQTADPGDKVWGGHECCYSIVTSIIGEGKIRSHYVRINRWPQMFVSRNRDW 192

Query: 219 SWEMSNHFTSYSSIADAEKDGGTGPL 245
           SWEMSN    YSS+ DA+K GGTGPL
Sbjct: 193 SWEMSNCLYCYSSVPDADKIGGTGPL 218

[Close]

BLAST of Carg06262-RA vs. TrEMBL
Match: tr|A0A061EM39|A0A061EM39_THECC (F-box family protein OS=Theobroma cacao OX=3641 GN=TCM_020443 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.8e-91
Identity = 150/206 (72.82%), Postives = 178/206 (86.41%), Query Frame = 0


Query: 39  QDPFEVLGSDLLMAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAHIPR 98
           +DP EV G D+++ IL  +D+RSVALSLLVSR+W+G+ASSD LWSSKC ELW GKAHIPR
Sbjct: 48  RDPLEVFGRDIMVMILSNLDARSVALSLLVSRAWHGVASSDRLWSSKCEELWHGKAHIPR 107

Query: 99  LAQTRGLPKMAAYSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLL 158
            +Q RGL K+AAYS+SVMDG RTRIM++DLCDH W+FHFNK AP YWR+LDPYW+G+  L
Sbjct: 108 ASQARGLSKLAAYSISVMDGKRTRIMKDDLCDHVWEFHFNKAAPEYWRNLDPYWKGTGPL 167

Query: 159 MRRYFHPDGSQTADPDDRVWGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRNEDW 218
           MRRYFHPDGSQTADP D+VWGGHECC+S VT++VG+GKIR HYVRIN+WPRM VSRN+DW
Sbjct: 168 MRRYFHPDGSQTADPGDKVWGGHECCYSVVTSVVGEGKIRVHYVRINRWPRMFVSRNQDW 227

Query: 219 SWEMSNHFTSYSSIADAEKDGGTGPL 245
           SWEMSN    Y+S+ DA+K GGTGPL
Sbjct: 228 SWEMSNCLYCYTSVPDADKKGGTGPL 253

[Close]

BLAST of Carg06262-RA vs. TrEMBL
Match: tr|A0A2I4H2B9|A0A2I4H2B9_9ROSI (uncharacterized protein LOC109012869 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012869 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.3e-91
Identity = 151/208 (72.60%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 36  VLLQDPFEVLGSDLLMAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGKAH 95
           VL +DP EV G+D+++ IL  +D+RSVALSL+VSR WYG+ASSD +WS K  ELWLGKAH
Sbjct: 55  VLRRDPLEVFGTDIMLMILSNLDARSVALSLVVSRGWYGVASSDRIWSPKLEELWLGKAH 114

Query: 96  IPRLAQTRGLPKMAAYSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGS 155
           IPRL Q RGL K+ AYSL+VMDG R RIM++DLCDHAW+FHFNK AP YWR+LDPYW+G+
Sbjct: 115 IPRLMQIRGLSKLVAYSLAVMDGKRNRIMKDDLCDHAWEFHFNKGAPEYWRNLDPYWKGT 174

Query: 156 HLLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTTIVGDGKIREHYVRINKWPRMLVSRN 215
              MRRYFHPDGSQ+ADPDD+VWGGHECC+ TVT+I G+GKIREHYVRIN+WPRM VSR 
Sbjct: 175 GPPMRRYFHPDGSQSADPDDKVWGGHECCYLTVTSIAGEGKIREHYVRINRWPRMSVSRK 234

Query: 216 EDWSWEMSNHFTSYSSIADAEKDGGTGP 244
            DWSWE+SNH  SYSSI DA K+GGTGP
Sbjct: 235 HDWSWELSNHLYSYSSIPDANKEGGTGP 262

The following BLAST results are available for this feature:

BLAST of Carg06262-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539867.1	8.5e-140	97.13	uncharacterized protein LOC111800413 [Cucurbita pepo subsp. pepo]	[more]
XP_022974484.1	7.4e-136	95.49	uncharacterized protein LOC111473162 [Cucurbita maxima]	[more]
XP_022944409.1	3.7e-119	97.61	uncharacterized protein LOC111448835 [Cucurbita moschata]	[more]
XP_004134023.1	4.8e-119	83.81	PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus] >KG...	[more]
XP_022157958.1	1.0e-116	82.52	uncharacterized protein LOC111024557 isoform X1 [Momordica charantia]	[more]

BLAST of Carg06262-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg06262-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06262-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L471\|A0A0A0L471_CUCSA	3.2e-119	83.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1	[more]
tr\|A0A1S3AWZ4\|A0A1S3AWZ4_CUCME	4.9e-112	77.17	uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1R3KQ13\|A0A1R3KQ13_9ROSI	2.2e-91	73.30	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_05738 PE=4 SV=1	[more]
tr\|A0A061EM39\|A0A061EM39_THECC	2.8e-91	72.82	F-box family protein OS=Theobroma cacao OX=3641 GN=TCM_020443 PE=4 SV=1	[more]
tr\|A0A2I4H2B9\|A0A2I4H2B9_9ROSI	6.3e-91	72.60	uncharacterized protein LOC109012869 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001810	F-box_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06262	Carg06262	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06262-RA	Carg06262-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06262-RA.exon.1	Carg06262-RA.exon.1	exon
Carg06262-RA.exon.2	Carg06262-RA.exon.2	exon
Carg06262-RA.exon.3	Carg06262-RA.exon.3	exon
Carg06262-RA.exon.4	Carg06262-RA.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06262-RA.five_prime_UTR.1	Carg06262-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06262-RA.CDS.1	Carg06262-RA.CDS.1	CDS
Carg06262-RA.CDS.2	Carg06262-RA.CDS.2	CDS
Carg06262-RA.CDS.3	Carg06262-RA.CDS.3	CDS
Carg06262-RA.CDS.4	Carg06262-RA.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 33..162 e-value: 8.6E-9 score: 37.2
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 48..86 e-value: 1.1E-5 score: 25.1
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 39..93