Carg05677-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05677-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_033 : 325073 .. 327144 (-)
Sequence length	499

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAAATAGAGGTAATGTAAGATTGACTACTCTGTTCTGGGTTGAAATTTTGGAGGCACAGTCGGCCATTCCGATTTAGGGGTTTATTGGAGAATTTTAGAGATTATTCTGATTTAGGGGTTCACTCGAGCAACTTCAGAGGTTAAACGAACGATCGGATCGTTCTTTTTCTTTTTTTGCCTGTTATCGACACCTTTTGTATTTTTCGTGGTTTTGATTATGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGTTCGTTCCCATGGTAACGTGATTATTGTCTAGGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGTCATGTCAATTCAGGCCGGTGGGAGATTTTCGCATCTGCTAGGAATACTGGTATGATTCCAAGCCCAAGGCTGTAGGAAGTAATTGTTGTTTATAAGTTTATTTTTAGTTTCATTATTTGTTGGCTGTCAAGTCGTGAATTGTAGCTTTAGCTGATTTATTCTTGAAAAAAGATGTACCGAAAGTAAATGATGAATCAAAAAGCCTAATATCATGAAAGTCCTTTTTCTTGAGGAAGAAGTTCTGCAGGGGCCTCCCTTGCTCAATGAAGAACCATGGAATTACTGTCGTTTTATCTTCCATAAGTTCTTCACCATATTTTTTGAGGCAGCAATTAAGAAAGCTCCAAAATGTAATTGTTGCTAGCTTGGGTTGCAATGAAATAAACTCTATTACAGAATATAGAATCTTATCGACACAGTTACCATTCTGTCGAGCCAGTTTAGACAATACTTCTTATAGAACTTAGCCAGAATTGAAGGAAAAAACAGTTGGCTTGTATTGTAAAATTTAGTGTCATGCACAATTTGTTGTCTGCTTATTGATCTTTGGTTTACAATTGTTTGCTTATGGATTATGTCAGCATCTGACTGCAAGTTCTGGAAAGTTTGATTTTTAGATGTTATAGTTTTCAGTATTTGATTGTCTTGTTAGTGTGTCTACATCTCTTACAATAGTATTCCATTTTCTGAACTTGCACAGATTTGCGTTTAGATTCATCTAAAAGATCAAGCTCTTCTCCACTTTTAAACAATGTCGACTATGTTCACGTTCATAATATTTGGGAGTCTGTATGAGTATTTATAGCTTTTTTTCCAGCTAGTGGATGATTTGATGCACCTTTTTTTTTAAAATTTGCATGTGATTTCAACATAAATGAAGGGTTTCATTTTGCTTTTCAACCACTTGAGTCTTTGAGAATGAGCTTTTGGATTCTGAATTTTCTCTTACGAACATTCCTCTAGGTCATGATGATGAACGGACGATATGAGATATATACTAGTGTCTGGATCAATTTTTTAGACTGATTTGAGTCAGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGATTTGTCTGAATTGAAGATCAATGCATAATTATTATTTTTCATTAATAATATCATGCAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAGGGATGCATGAAATATAACCACACAACCCACTAAGGTAAGCCATTGCTTTTACAAAACTTTTATCATTCTATTTACCGGTCAAACTTCAACAAAAATAGTTTATGTTCACTTTTAATGGTTTCAAATGATCCGTATCTCATTGGTTTGACATTATTGTTCATATTTCCTTTGCTATTGGAGAAGATTTTGATTAATAACCACGTTACGAAAATTTCAGATGGAAATGGAGGACAGAGATCTAATAAAGTTGTGTTCAAGGAATCCAACTCTGGTTGCTACATTCAACACTCCATCACGTAAGAAATTTTCTATTTGACATCATAAACTACCTTATGTGTTGCCTAGATCTCACGAGAATTACGTTATTGGCAATGTTGTG

mRNA sequence

ATGATGAAAAATAGAGGTAATGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAGGGATGCATGAAATATAACCACACAACCCACTAAGATGGAAATGGAGGACAGAGATCTAATAAAGTTGTGTTCAAGGAATCCAACTCTGGTTGCTACATTCAACACTCCATCACGTAAGAAATTTTCTATTTGACATCATAAACTACCTTATGTGTTGCCTAGATCTCACGAGAATTACGTTATTGGCAATGTTGTG

Coding sequence (CDS)

ATGATGAAAAATAGAGGTAATGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAG

Protein sequence

MMKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEKRTANSYVIAIGSDNRVGKNKAVALDEVIAWQKKYSWGKMMAINLLKSKDGPVHVKFVVNN

Homology

[Close]

BLAST of Carg05677-RA vs. NCBI nr
Match: XP_022146495.1 (uncharacterized protein LOC111015698 isoform X3 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]

BLAST of Carg05677-RA vs. NCBI nr
Match: XP_022146494.1 (uncharacterized protein LOC111015698 isoform X2 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]

BLAST of Carg05677-RA vs. NCBI nr
Match: XP_022146493.1 (uncharacterized protein LOC111015698 isoform X1 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]

BLAST of Carg05677-RA vs. NCBI nr
Match: XP_022146496.1 (auxilin-related protein 2 isoform X4 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]

BLAST of Carg05677-RA vs. NCBI nr
Match: XP_004134908.1 (PREDICTED: uncharacterized protein LOC101213807 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 235 MKVSMDDLEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 294

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 295 AVALDEVIAWAKE 307

[Close]

BLAST of Carg05677-RA vs. TrEMBL
Match: tr|A0A1S3AZ45|A0A1S3AZ45_CUCME (uncharacterized protein LOC103484343 OS=Cucumis melo OX=3656 GN=LOC103484343 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 235 MKVSMDDFEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 294

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 295 AVALDEVIAWAKE 307

[Close]

BLAST of Carg05677-RA vs. TrEMBL
Match: tr|A0A0A0KKR1|A0A0A0KKR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524620 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 229 MKVSMDDLEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 288

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 289 AVALDEVIAWAKE 301

[Close]

BLAST of Carg05677-RA vs. TrEMBL
Match: tr|A0A2K1YH96|A0A2K1YH96_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 245 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 304

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 305 GTGEAVSIDEAIAWAKE 321

[Close]

BLAST of Carg05677-RA vs. TrEMBL
Match: tr|A0A2K1YH72|A0A2K1YH72_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 225 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 284

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 285 GTGEAVSIDEAIAWAKE 301

[Close]

BLAST of Carg05677-RA vs. TrEMBL
Match: tr|A0A2K1YH75|A0A2K1YH75_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 245 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 304

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 305 GTGEAVSIDEAIAWAKE 321

The following BLAST results are available for this feature:

BLAST of Carg05677-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146495.1	2.1e-12	63.51	uncharacterized protein LOC111015698 isoform X3 [Momordica charantia]	[more]
XP_022146494.1	2.1e-12	63.51	uncharacterized protein LOC111015698 isoform X2 [Momordica charantia]	[more]
XP_022146493.1	2.1e-12	63.51	uncharacterized protein LOC111015698 isoform X1 [Momordica charantia]	[more]
XP_022146496.1	2.1e-12	63.51	auxilin-related protein 2 isoform X4 [Momordica charantia]	[more]
XP_004134908.1	1.0e-11	63.01	PREDICTED: uncharacterized protein LOC101213807 [Cucumis sativus]	[more]

BLAST of Carg05677-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05677-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05677-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZ45\|A0A1S3AZ45_CUCME	6.9e-12	63.01	uncharacterized protein LOC103484343 OS=Cucumis melo OX=3656 GN=LOC103484343 PE=...	[more]
tr\|A0A0A0KKR1\|A0A0A0KKR1_CUCSA	6.9e-12	63.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524620 PE=4 SV=1	[more]
tr\|A0A2K1YH96\|A0A2K1YH96_POPTR	2.2e-05	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=...	[more]
tr\|A0A2K1YH72\|A0A2K1YH72_POPTR	2.2e-05	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=...	[more]
tr\|A0A2K1YH75\|A0A2K1YH75_POPTR	2.2e-05	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05677	Carg05677	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05677-RA	Carg05677-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05677-RA.three_prime_UTR.2	Carg05677-RA.three_prime_UTR.2	three_prime_UTR
Carg05677-RA.three_prime_UTR.1	Carg05677-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05677-RA.CDS.4	Carg05677-RA.CDS.4	CDS
Carg05677-RA.CDS.3	Carg05677-RA.CDS.3	CDS
Carg05677-RA.CDS.2	Carg05677-RA.CDS.2	CDS
Carg05677-RA.CDS.1	Carg05677-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05677-RA.exon.5	Carg05677-RA.exon.5	exon
Carg05677-RA.exon.4	Carg05677-RA.exon.4	exon
Carg05677-RA.exon.3	Carg05677-RA.exon.3	exon
Carg05677-RA.exon.2	Carg05677-RA.exon.2	exon
Carg05677-RA.exon.1	Carg05677-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23