Carg05677 (gene) Silver-seed gourd

Overview
NameCarg05677
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_033 : 325073 .. 327144 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAAAATAGAGGTAATGTAAGATTGACTACTCTGTTCTGGGTTGAAATTTTGGAGGCACAGTCGGCCATTCCGATTTAGGGGTTTATTGGAGAATTTTAGAGATTATTCTGATTTAGGGGTTCACTCGAGCAACTTCAGAGGTTAAACGAACGATCGGATCGTTCTTTTTCTTTTTTTGCCTGTTATCGACACCTTTTGTATTTTTCGTGGTTTTGATTATGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGTTCGTTCCCATGGTAACGTGATTATTGTCTAGGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGTCATGTCAATTCAGGCCGGTGGGAGATTTTCGCATCTGCTAGGAATACTGGTATGATTCCAAGCCCAAGGCTGTAGGAAGTAATTGTTGTTTATAAGTTTATTTTTAGTTTCATTATTTGTTGGCTGTCAAGTCGTGAATTGTAGCTTTAGCTGATTTATTCTTGAAAAAAGATGTACCGAAAGTAAATGATGAATCAAAAAGCCTAATATCATGAAAGTCCTTTTTCTTGAGGAAGAAGTTCTGCAGGGGCCTCCCTTGCTCAATGAAGAACCATGGAATTACTGTCGTTTTATCTTCCATAAGTTCTTCACCATATTTTTTGAGGCAGCAATTAAGAAAGCTCCAAAATGTAATTGTTGCTAGCTTGGGTTGCAATGAAATAAACTCTATTACAGAATATAGAATCTTATCGACACAGTTACCATTCTGTCGAGCCAGTTTAGACAATACTTCTTATAGAACTTAGCCAGAATTGAAGGAAAAAACAGTTGGCTTGTATTGTAAAATTTAGTGTCATGCACAATTTGTTGTCTGCTTATTGATCTTTGGTTTACAATTGTTTGCTTATGGATTATGTCAGCATCTGACTGCAAGTTCTGGAAAGTTTGATTTTTAGATGTTATAGTTTTCAGTATTTGATTGTCTTGTTAGTGTGTCTACATCTCTTACAATAGTATTCCATTTTCTGAACTTGCACAGATTTGCGTTTAGATTCATCTAAAAGATCAAGCTCTTCTCCACTTTTAAACAATGTCGACTATGTTCACGTTCATAATATTTGGGAGTCTGTATGAGTATTTATAGCTTTTTTTCCAGCTAGTGGATGATTTGATGCACCTTTTTTTTTAAAATTTGCATGTGATTTCAACATAAATGAAGGGTTTCATTTTGCTTTTCAACCACTTGAGTCTTTGAGAATGAGCTTTTGGATTCTGAATTTTCTCTTACGAACATTCCTCTAGGTCATGATGATGAACGGACGATATGAGATATATACTAGTGTCTGGATCAATTTTTTAGACTGATTTGAGTCAGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGATTTGTCTGAATTGAAGATCAATGCATAATTATTATTTTTCATTAATAATATCATGCAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAGGGATGCATGAAATATAACCACACAACCCACTAAGGTAAGCCATTGCTTTTACAAAACTTTTATCATTCTATTTACCGGTCAAACTTCAACAAAAATAGTTTATGTTCACTTTTAATGGTTTCAAATGATCCGTATCTCATTGGTTTGACATTATTGTTCATATTTCCTTTGCTATTGGAGAAGATTTTGATTAATAACCACGTTACGAAAATTTCAGATGGAAATGGAGGACAGAGATCTAATAAAGTTGTGTTCAAGGAATCCAACTCTGGTTGCTACATTCAACACTCCATCACGTAAGAAATTTTCTATTTGACATCATAAACTACCTTATGTGTTGCCTAGATCTCACGAGAATTACGTTATTGGCAATGTTGTG

mRNA sequence

ATGATGAAAAATAGAGGTAATGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAGGGATGCATGAAATATAACCACACAACCCACTAAGATGGAAATGGAGGACAGAGATCTAATAAAGTTGTGTTCAAGGAATCCAACTCTGGTTGCTACATTCAACACTCCATCACGTAAGAAATTTTCTATTTGACATCATAAACTACCTTATGTGTTGCCTAGATCTCACGAGAATTACGTTATTGGCAATGTTGTG

Coding sequence (CDS)

ATGATGAAAAATAGAGGTAATGATTCTTCGTTTCATTCCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGGGGAAGAACAAAGCAGTTGCTCTTGATGAAGTGATTGCTTGGCAAAAGAAATACAGTTGGGGCAAAATGATGGCAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAG

Protein sequence

MMKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEKRTANSYVIAIGSDNRVGKNKAVALDEVIAWQKKYSWGKMMAINLLKSKDGPVHVKFVVNN
Homology
[Close]
BLAST of Carg05677 vs. NCBI nr
Match: XP_022146495.1 (uncharacterized protein LOC111015698 isoform X3 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]
BLAST of Carg05677 vs. NCBI nr
Match: XP_022146494.1 (uncharacterized protein LOC111015698 isoform X2 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]
BLAST of Carg05677 vs. NCBI nr
Match: XP_022146493.1 (uncharacterized protein LOC111015698 isoform X1 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]
BLAST of Carg05677 vs. NCBI nr
Match: XP_022146496.1 (auxilin-related protein 2 isoform X4 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAE--EKRTANSYVIAIGSDNRVGKN 61
           MK   +D   +SPSS++SSLCE  G KPDIQI VLAE  E    +SYVI IGSDNR G N
Sbjct: 235 MKVSVDDLEPNSPSSAVSSLCEVSGAKPDIQINVLAEEDEDEVMSSYVIEIGSDNREGTN 294

Query: 62  KAVALDEVIAWQKK 74
           +AVALDEVIAW K+
Sbjct: 295 EAVALDEVIAWAKE 308

[Close]
BLAST of Carg05677 vs. NCBI nr
Match: XP_004134908.1 (PREDICTED: uncharacterized protein LOC101213807 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 235 MKVSMDDLEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 294

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 295 AVALDEVIAWAKE 307

[Close]
BLAST of Carg05677 vs. TrEMBL
Match: tr|A0A1S3AZ45|A0A1S3AZ45_CUCME (uncharacterized protein LOC103484343 OS=Cucumis melo OX=3656 GN=LOC103484343 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 235 MKVSMDDFEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 294

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 295 AVALDEVIAWAKE 307

[Close]
BLAST of Carg05677 vs. TrEMBL
Match: tr|A0A0A0KKR1|A0A0A0KKR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524620 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 2   MKNRGNDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEE-KRTANSYVIAIGSDNRVGKNK 61
           MK   +D   +SPSS+ISSLC+  G  PDIQI VLAEE     +SYVI IGSDNR G N+
Sbjct: 229 MKVSMDDLEPNSPSSAISSLCQGSGANPDIQINVLAEEDDEVMSSYVIEIGSDNREGTNE 288

Query: 62  AVALDEVIAWQKK 74
           AVALDEVIAW K+
Sbjct: 289 AVALDEVIAWAKE 301

[Close]
BLAST of Carg05677 vs. TrEMBL
Match: tr|A0A2K1YH96|A0A2K1YH96_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 245 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 304

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 305 GTGEAVSIDEAIAWAKE 321

[Close]
BLAST of Carg05677 vs. TrEMBL
Match: tr|A0A2K1YH72|A0A2K1YH72_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 225 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 284

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 285 GTGEAVSIDEAIAWAKE 301

[Close]
BLAST of Carg05677 vs. TrEMBL
Match: tr|A0A2K1YH75|A0A2K1YH75_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 7   NDSSFHSPSSSISSLCEEPGNKPDIQIYVLAEEK----------RTANSYVIAIGSDNRV 66
           +D   +SPSS  SSLC EP  K  +Q  V+ EE+             +SYVI I SD+R 
Sbjct: 245 DDLELNSPSSPASSLCHEPEAKAGVQCNVMLEEELEQVEDEDEDEVMSSYVIEINSDHRE 304

Query: 67  GKNKAVALDEVIAWQKK 74
           G  +AV++DE IAW K+
Sbjct: 305 GTGEAVSIDEAIAWAKE 321

The following BLAST results are available for this feature:
BLAST of Carg05677 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022146495.12.1e-1263.51uncharacterized protein LOC111015698 isoform X3 [Momordica charantia][more]
XP_022146494.12.1e-1263.51uncharacterized protein LOC111015698 isoform X2 [Momordica charantia][more]
XP_022146493.12.1e-1263.51uncharacterized protein LOC111015698 isoform X1 [Momordica charantia][more]
XP_022146496.12.1e-1263.51auxilin-related protein 2 isoform X4 [Momordica charantia][more]
XP_004134908.11.0e-1163.01PREDICTED: uncharacterized protein LOC101213807 [Cucumis sativus][more]
BLAST of Carg05677 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg05677 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg05677 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZ45|A0A1S3AZ45_CUCME6.9e-1263.01uncharacterized protein LOC103484343 OS=Cucumis melo OX=3656 GN=LOC103484343 PE=... [more]
tr|A0A0A0KKR1|A0A0A0KKR1_CUCSA6.9e-1263.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524620 PE=4 SV=1[more]
tr|A0A2K1YH96|A0A2K1YH96_POPTR2.2e-0542.86Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=... [more]
tr|A0A2K1YH72|A0A2K1YH72_POPTR2.2e-0542.86Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=... [more]
tr|A0A2K1YH75|A0A2K1YH75_POPTR2.2e-0542.86Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081500v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05677-RACarg05677-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05677CmaCh01G011830Cucurbita maxima (Rimu)carcmaB1410
Carg05677CmoCh11G017010Cucurbita moschata (Rifu)carcmoB1365
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg05677Watermelon (Charleston Gray)carwcgB0995