Carg05580-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTGATGAGAGAGGCATTAATGAACCTACAACTGATGATAACATTCAGATGACATCATGTAAGTCTATATATACTTGTAAAATCCATAAGCTTGTAGCTAGATACTCATCTGTTCCTTTTTGGAGGAATTTCTACCAGTGGAATCTGTCGGGCTTTCTATGTTTGAATTTGGTATCTTTGTTTTAAAGCTCCTTGTGGAAAAATATTACCAATCTCAAGTTGAAATACCACGGAAGGATCTCCAACCACAGTAAATAAGAACTTCGTTTCCATCTGTTCTGTTCTTATAGGTCTGAATGCTCTATTGCTTTGCTTTTATTGATTATATGGTTCCATTCTCCAGTTTTATGAAATTCTACATTCTTTCATCAGCTCGTCTTTTTCTCTTTCATTTTTTAACTTCAAATAATTAATTAGTTGTTTCCCGTTCAACCCATTCATGTGATCTGTTCACAATGACTGCATTTTTTACAATTATATTTCTTCAGTTTTGATATGTCTTGCTTGACATAAATCTTATAATATAAGAAACTTGACTTGTAGAGATTAGAATTTTGTTACCAATTTTACATTAACTAGATTTAAGGATAGGTCTGCGTTGAAATCCCAGCGTTGAGGACCCAACAATTGAAATTTAAGTCAAAAGAACAGTGGCTTTGGTTCCAAAATTCAATCTTCCAGATGCATTCAAATAAATCTGGTTTAATTTGGAGTGGTAAATTTCTATATTGCTGAATTATAGGAAGCAGAAGGAAGAAAAAAATGATCATACGTGCGGGAACTATGATTTCTTTGAGTTTGTTGTTGTACATGTGAGTGTTTAGAAGTGGTAGAAAGGTTGTAAATGGAGGTTTAAAGGTGTGGACATAACTTTTAAGTACCCTCTTTTTTTCTATATATTTCACATTCTATTGGTATGTTTTTGTGCTGCAGCAATAACAAGTCAAGAACTCACCAATGTTGGGAAGAAGACAATGGATGATACTGATCCGGCAATTGAAAGCTCTAAAATGGTGACCAGTTTTTTAAAATGCACATGCCCTTTCATTTTGTTTGTCTTTGTATTTTGTTCTTTTTATAACTATTTTTCCTAATGTGAAGTTTGATGTTTAGGTAGTCGAACAAACAGTTGAAGTGGGAAGGCAATCTTCTTCTACATGGGATGGCCAAGTAAGTATATAAACTGACCATTTGAAATCATCCATTTCTTAGAAAAAGAAGTATACCTTTGGTTTAGCCCTATTAACTAGAAGCCTTTTAGTGTGTCTATGATGGTTATTGTTCTCGCCATGCAAGTTATCAAGTTTTAGTATTGTAAAATCATCAAGTTTTAGTATTGTAAAATCATCAAGTTTTAGAATTGTAAAATCAAACGTTCATTGAGAAAAAAAAAAGTGGATGGATGTGGAGCTGCATGGGAAACGTGAGATGCTGTATTTTGGTTAACGAAAACTTTGAGGTAGGATCTTAGTGTTGATAGGCTTTAAATAAGGTGATCTCCCATCTCCTTTTCTCTTCCTTCTAGTTGTAGATATTCTTAGTAGAATTGTCTTTAGGGTGGGATAGGGGCTTATGGAAGCTTTTAGGATGGGAAGGGATAGAGTCCATTTGTGACCTCTCTAGTTTGTTAACGACACTGTTCTTTGCTTTTGTCAAGAAGAGTCTTTTCTTAATGTTAACAGCCTTTGTTCTTCTTTGAGTCTAATCCTGGTCTTAAGATTAGTCGAGAAAAGAGCTCAGTTATTGATATTAATTGTGATTCATCTAAGGCTTCCAGATGGACCATGTTGGTTGGTTGTAATGTAGGGATGGCCTAA ATGTTTGATGAGAGAGGCATTAATGAACCTACAACTGATGATAACATTCAGATGACATCATCAATAACAAGTCAAGAACTCACCAATGTTGGGAAGAAGACAATGGATGATACTGATCCGGCAATTGAAAGCTCTAAAATGGTAGTCGAACAAACAGTTGAAGTGGGAAGGCAATCTTCTTCTACATGGGATGGCCAACCTTTGTTCTTCTTTGAGTCTAATCCTGGTCTTAAGATTAGTCGAGAAAAGAGCTCAGTTATTGATATTAATTGTGATTCATCTAAGGCTTCCAGATGGACCATGTTGGTTGGTTGTAATGTAGGGATGGCCTAA ATGTTTGATGAGAGAGGCATTAATGAACCTACAACTGATGATAACATTCAGATGACATCATCAATAACAAGTCAAGAACTCACCAATGTTGGGAAGAAGACAATGGATGATACTGATCCGGCAATTGAAAGCTCTAAAATGGTAGTCGAACAAACAGTTGAAGTGGGAAGGCAATCTTCTTCTACATGGGATGGCCAACCTTTGTTCTTCTTTGAGTCTAATCCTGGTCTTAAGATTAGTCGAGAAAAGAGCTCAGTTATTGATATTAATTGTGATTCATCTAAGGCTTCCAGATGGACCATGTTGGTTGGTTGTAATGTAGGGATGGCCTAA MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWTMLVGCNVGMA
BLAST of Carg05580-RA vs. NCBI nr
Match: XP_022959325.1 (uncharacterized protein LOC111460335 isoform X1 [Cucurbita moschata] >XP_022959326.1 uncharacterized protein LOC111460335 isoform X1 [Cucurbita moschata]) HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
BLAST of Carg05580-RA vs. NCBI nr
Match: XP_022959328.1 (uncharacterized protein LOC111460335 isoform X3 [Cucurbita moschata]) HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
BLAST of Carg05580-RA vs. NCBI nr
Match: XP_022959327.1 (uncharacterized protein LOC111460335 isoform X2 [Cucurbita moschata]) HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
BLAST of Carg05580-RA vs. NCBI nr
Match: XP_023006500.1 (uncharacterized protein LOC111499213 isoform X3 [Cucurbita maxima]) HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27 Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0
BLAST of Carg05580-RA vs. NCBI nr
Match: XP_023006497.1 (uncharacterized protein LOC111499213 isoform X1 [Cucurbita maxima] >XP_023006498.1 uncharacterized protein LOC111499213 isoform X1 [Cucurbita maxima]) HSP 1 Score: 129.8 bits (325), Expect = 5.7e-27 Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0
BLAST of Carg05580-RA vs. TAIR10
Match: AT3G17440.1 (novel plant snare 13) HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg05580-RA vs. TAIR10
Match: AT1G48240.1 (novel plant snare 12) HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11 Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg05580-RA vs. TAIR10
Match: AT2G35190.1 (novel plant snare 11) HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06 Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 0
BLAST of Carg05580-RA vs. Swiss-Prot
Match: sp|Q9LRP1|NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=NPSN13 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.3e-10 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 0
BLAST of Carg05580-RA vs. Swiss-Prot
Match: sp|Q9LNH6|NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=NPSN12 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.3e-10 Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of Carg05580-RA vs. Swiss-Prot
Match: sp|Q944A9|NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 4.2e-05 Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 0
BLAST of Carg05580-RA vs. TrEMBL
Match: tr|A0A1S3C8R6|A0A1S3C8R6_CUCME (uncharacterized protein LOC103497748 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497748 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20 Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 0
BLAST of Carg05580-RA vs. TrEMBL
Match: tr|A0A1S3C712|A0A1S3C712_CUCME (uncharacterized protein LOC103497748 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497748 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 9.9e-20 Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of Carg05580-RA vs. TrEMBL
Match: tr|A0A0A0KCW9|A0A0A0KCW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G001720 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 6.4e-19 Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Carg05580-RA vs. TrEMBL
Match: tr|A0A1S3C8S1|A0A1S3C8S1_CUCME (novel plant SNARE 13 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497752 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12 Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 0
BLAST of Carg05580-RA vs. TrEMBL
Match: tr|A0A1S3C842|A0A1S3C842_CUCME (novel plant SNARE 13 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497752 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12 Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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