Carg05427-RA (mRNA) Silver-seed gourd

Overview
NameCarg05427-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChloride channel protein
LocationCucurbita_argyrosperma_scaffold_046 : 327771 .. 329076 (-)
Sequence length820
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCAGGTAAATGTATACTCGATCTGAGTCCCGAGACTATAATGGACGGGTTATCCTCACTTTTCCATCGAGTTCTGACTCGTTCTTTTGGAATTTCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATTTGCTTGATTACTTTGTTTGGTTTTATGTTATTCATCATTTTTTAGGGAATCGTCGTTTCCGTAATCGTCATATCTTGCATTGTCGTAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGTAGAATACTCACCTTACCACGTTTAATATTTCAAAAACACGTCTCGACATTAATAAGATACAAACACCTCGATGCAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGGTCTCTGACTCTCTATGATGCTTTACTTATCTCATAAAACGATGCATCTATTCGGGCTTCCGAGATTGTAATGCAATGCTAATGCTTCCGTTTAGATTGATTCTTACGATTTTAGTCACTTTAGACGCTGTCGAAACAAGTTCATCATCTAATGTGCCGAAACTGTATAATCTCTTCAAACTCAACTTATTAATCTTGTATATCGTTACGATGGCATGGCAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGATGAACATCATGCAGCAGCTGCCAAGATTAATATGGTCAGATTACTACTAGTTTATGATGCTTTTCTTCATATTCCCATTAGGAAATATATTCTTTATTGTTTGCTGGCTGGGATTCCAATCCCAAACCAGGTAGATATCTAAAGAACAGAGCAGAACAGAGCATTGTATTATATCATAGATTGTAATGATAAGAGTTGGCTTAGTTTATTTTGTTTATGAAAGCTTCAAACTTACGAAAACGTATGTATAGACGACGTAAAAAGAGACCTCGATGACGAACTATCACTACAAAATGGCTGAAATTTGTTGTACAAAAAAGACTGCAACTTATTGAAAGGGAAGGGCTTGGCTTGTGCCCGTTTAAGCGAACGCTAGAACGGACAAGGCCGAAAGCAATAGCCAAAAGCC

mRNA sequence

ATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGATGAACATCATGCAGCAGCTGCCAAGATTAATATGGTCAGATTACTACTAGTTTATGATGCTTTTCTTCATATTCCCATTAGGAAATATATTCTTTATTGTTTGCTGGCTGGGATTCCAATCCCAAACCAGGTAGATATCTAAAGAACAGAGCAGAACAGAGCATTGTATTATATCATAGATTGTAATGATAAGAGTTGGCTTAGTTTATTTTGTTTATGAAAGCTTCAAACTTACGAAAACGTATGTATAGACGACGTAAAAAGAGACCTCGATGACGAACTATCACTACAAAATGGCTGAAATTTGTTGTACAAAAAAGACTGCAACTTATTGAAAGGGAAGGGCTTGGCTTGTGCCCGTTTAAGCGAACGCTAGAACGGACAAGGCCGAAAGCAATAGCCAAAAGCC

Coding sequence (CDS)

ATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGA

Protein sequence

MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVESPLLNGLLVNNTDG
Homology
[Close]
BLAST of Carg05427-RA vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 662 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 721

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 722 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 781

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 782 VESPLLNGLLVNNTDG 797

[Close]
BLAST of Carg05427-RA vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 790 VESPLLNGLLVNNTDG 805

[Close]
BLAST of Carg05427-RA vs. NCBI nr
Match: XP_023006123.1 (chloride channel protein CLC-d isoform X2 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 662 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 721

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 722 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 781

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 782 VESPLLNGLLVNNTDG 797

[Close]
BLAST of Carg05427-RA vs. NCBI nr
Match: XP_023006122.1 (chloride channel protein CLC-d isoform X1 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 790 VESPLLNGLLVNNTDG 805

[Close]
BLAST of Carg05427-RA vs. NCBI nr
Match: XP_023548208.1 (chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-67
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDR IHT NGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRSIHTTNGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNN DG
Sbjct: 790 VESPLLNGLLVNNADG 805

[Close]
BLAST of Carg05427-RA vs. TAIR10
Match: AT5G26240.1 (chloride channel D)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-43
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+FSEF KP SSKG+ I+DI+L+S+DLEMYIDL PFLNPSPY+VPEDMSLTKVYNLFRQ
Sbjct: 667 RHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQ 726

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMEL-QSTSVRARRRDRRIHTANGDVE 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++ +S A+EL QSTSVR R  +        D  
Sbjct: 727 LGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGRYSET---ATRMDAA 786

Query: 124 SPLLNGLL 131
            PLL+ LL
Sbjct: 787 RPLLDDLL 791

[Close]
BLAST of Carg05427-RA vs. TAIR10
Match: AT5G33280.1 (Voltage-gated chloride channel family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           EF K  S +   I+D+ LS E+L MY+DL PF N SPY V E MSL K   LFR++G+RH
Sbjct: 656 EFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRH 715

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             V+P+ +N   VVG++TR D + E
Sbjct: 716 LLVIPKTSNRPPVVGILTRHDFMPE 740

[Close]
BLAST of Carg05427-RA vs. TAIR10
Match: AT5G49890.1 (chloride channel C)

HSP 1 Score: 84.0 bits (206), Expect = 8.0e-17
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           +F K    KG+ I+D++LS E++EMY+DL P  N SPY V E +SL K   LFRQLGLRH
Sbjct: 682 DFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRH 741

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             VVP+      +VG++TR D + E
Sbjct: 742 LCVVPKTPGRPPIVGILTRHDFMPE 766

[Close]
BLAST of Carg05427-RA vs. TAIR10
Match: AT3G27170.1 (chloride channel B)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 20  SIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPR----- 79
           + DD+ ++S ++EMY+DL P  N +PY V E+MS+ K   LFRQ+GLRH  +VP+     
Sbjct: 687 NFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASG 746

Query: 80  PANVVGLITRKDL 88
              VVG++TR+DL
Sbjct: 747 MCPVVGILTRQDL 759

[Close]
BLAST of Carg05427-RA vs. TAIR10
Match: AT5G40890.1 (chloride channel A)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 20  SIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPR----- 79
           + DD+ ++S ++++Y+DL P  N +PY V + MS+ K   LFR +GLRH  VVP+     
Sbjct: 682 NFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASG 741

Query: 80  PANVVGLITRKDL 88
            + V+G++TR+DL
Sbjct: 742 MSPVIGILTRQDL 754

[Close]
BLAST of Carg05427-RA vs. Swiss-Prot
Match: sp|P92943|CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0 

Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+FSEF KP SSKG+ I+DI+L+S+DLEMYIDL PFLNPSPY+VPEDMSLTKVYNLFRQ
Sbjct: 667 RHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQ 726

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMEL-QSTSVRARRRDRRIHTANGDVE 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++ +S A+EL QSTSVR R  +        D  
Sbjct: 727 LGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGRYSET---ATRMDAA 786

Query: 124 SPLLNGLL 131
            PLL+ LL
Sbjct: 787 RPLLDDLL 791

[Close]
BLAST of Carg05427-RA vs. Swiss-Prot
Match: sp|P60300|CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=CLC-G PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-16
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           EF K  S +   I+D+ LS E+L MY+DL PF N SPY V E MSL K   LFR++G+RH
Sbjct: 656 EFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRH 715

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             V+P+ +N   VVG++TR D + E
Sbjct: 716 LLVIPKTSNRPPVVGILTRHDFMPE 740

[Close]
BLAST of Carg05427-RA vs. Swiss-Prot
Match: sp|Q96282|CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0 

Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           +F K    KG+ I+D++LS E++EMY+DL P  N SPY V E +SL K   LFRQLGLRH
Sbjct: 682 DFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRH 741

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             VVP+      +VG++TR D + E
Sbjct: 742 LCVVPKTPGRPPIVGILTRHDFMPE 766

[Close]
BLAST of Carg05427-RA vs. Swiss-Prot
Match: sp|P51798|CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens OX=9606 GN=CLCN7 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 21  IDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVG 80
           I  I++S ++ E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH  VV     VVG
Sbjct: 721 IQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNRNQVVG 780

Query: 81  LITRKDL 88
           L+TRKDL
Sbjct: 781 LVTRKDL 787

[Close]
BLAST of Carg05427-RA vs. Swiss-Prot
Match: sp|O70496|CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus OX=10090 GN=Clcn7 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 21  IDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVG 80
           I  I++S ++ E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH  VV     VVG
Sbjct: 719 IQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVG 778

Query: 81  LITRKDL 88
           L+TRKDL
Sbjct: 779 LVTRKDL 785

[Close]
BLAST of Carg05427-RA vs. TrEMBL
Match: tr|A0A1S3BMB3|A0A1S3BMB3_CUCME (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.1e-63
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 3   TRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFR 62
           +RHN +EFVKPASSKGISIDDINLSSEDLEMYIDLLP+LNPSPYIVPEDMSLTKVYNLFR
Sbjct: 664 SRHNLNEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFR 723

Query: 63  QLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVE 122
           QLGLRH FVVPRP+NVVGLITRKDLLIEDSEDSDAMELQSTSVRARR DRR+HT NGDVE
Sbjct: 724 QLGLRHLFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVE 783

Query: 123 SPLLNGLLVNNTDG 137
           SPLLNGLLV+NTDG
Sbjct: 784 SPLLNGLLVSNTDG 797

[Close]
BLAST of Carg05427-RA vs. TrEMBL
Match: tr|W9S6F4|W9S6F4_9ROSA (Chloride channel protein CLC-d OS=Morus notabilis OX=981085 GN=L484_012356 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+ +EFVKPASSKG+SIDDI+LSS+DLEMYIDL PFLNP+PYIVPEDMSLTKVYNLFRQ
Sbjct: 655 RHSLNEFVKPASSKGMSIDDIHLSSDDLEMYIDLAPFLNPNPYIVPEDMSLTKVYNLFRQ 714

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVES 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++EDS  +ELQSTSVRAR+RD+R+  +N + E 
Sbjct: 715 LGLRHIFVVPRPSRVLGLITRKDLLIEENEDSGNLELQSTSVRARQRDKRLVASNEEAER 774

Query: 124 PLLNGLLVNNTDG 137
           PLLNGLLV  T G
Sbjct: 775 PLLNGLLVQQTSG 787

[Close]
BLAST of Carg05427-RA vs. TrEMBL
Match: tr|A0A2I4G9B8|A0A2I4G9B8_9ROSI (Chloride channel protein OS=Juglans regia OX=51240 GN=LOC109005860 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.6e-51
Identity = 107/130 (82.31%), Postives = 116/130 (89.23%), Query Frame = 0 

Query: 2   PTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLF 61
           P RH  SEFVKPASSKGISI+DI+LSS+DLEMYIDL PFLNPSPYIVPEDMSLTKVYNLF
Sbjct: 664 PIRHTPSEFVKPASSKGISIEDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLF 723

Query: 62  RQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDV 121
           RQLGLRH FVVPRP+ V+GLITRKDLLIEDSE+SD +ELQSTSVR+R RDR +   NGD 
Sbjct: 724 RQLGLRHIFVVPRPSRVIGLITRKDLLIEDSEESDTVELQSTSVRSRHRDRSM-LRNGDA 783

Query: 122 ESPLLNGLLV 132
           ESPLLN LLV
Sbjct: 784 ESPLLNVLLV 792

[Close]
BLAST of Carg05427-RA vs. TrEMBL
Match: tr|A0A2P4LW82|A0A2P4LW82_QUESU (Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = 0 

Query: 2    PTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLF 61
            P RH  SEFVKP SSKG+++DDI+LS +DLEMYIDL PFLNPSPYIVPEDMSLTKVYNLF
Sbjct: 1262 PIRHTPSEFVKPVSSKGLTLDDIHLSPDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLF 1321

Query: 62   RQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDV 121
            RQLGLRH FVVPRP+ V+GLITR+DLLIED+E+S  +ELQSTSVRAR  DRR+   NGD 
Sbjct: 1322 RQLGLRHIFVVPRPSRVIGLITRRDLLIEDNEESATVELQSTSVRARHHDRRVSMGNGDA 1381

Query: 122  ESPLLNGLLV 132
            E PLLNGLLV
Sbjct: 1382 ERPLLNGLLV 1391

[Close]
BLAST of Carg05427-RA vs. TrEMBL
Match: tr|B9RTZ4|B9RTZ4_RICCO (Chloride channel protein OS=Ricinus communis OX=3988 GN=RCOM_0914010 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 102/130 (78.46%), Postives = 113/130 (86.92%), Query Frame = 0 

Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RHNFSEFVKP SSKGI I+DI+LSS+DLEMYIDL PFLNPSPY+VPEDMSLTKVYN+FRQ
Sbjct: 661 RHNFSEFVKPVSSKGICIEDIHLSSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNIFRQ 720

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVES 123
           LGLRH FVVPR + V+GLITRKDLLIED EDS  MELQSTSVR   +D+R+ T N DVE 
Sbjct: 721 LGLRHIFVVPRASRVIGLITRKDLLIEDHEDSANMELQSTSVRTHHQDKRMFTRNTDVER 780

Query: 124 PLLNGLLVNN 134
           PLLNGLLV +
Sbjct: 781 PLLNGLLVQD 790

The following BLAST results are available for this feature:
BLAST of Carg05427-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959118.12.6e-69100.00chloride channel protein CLC-d isoform X2 [Cucurbita moschata][more]
XP_022959117.12.6e-69100.00chloride channel protein CLC-d isoform X1 [Cucurbita moschata][more]
XP_023006123.12.6e-69100.00chloride channel protein CLC-d isoform X2 [Cucurbita maxima][more]
XP_023006122.12.6e-69100.00chloride channel protein CLC-d isoform X1 [Cucurbita maxima][more]
XP_023548208.11.4e-6797.79chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg05427-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26240.11.3e-4369.53chloride channel D[more]
AT5G33280.11.6e-1749.41Voltage-gated chloride channel family protein[more]
AT5G49890.18.0e-1749.41chloride channel C[more]
AT3G27170.13.2e-1346.58chloride channel B[more]
AT5G40890.11.0e-1141.10chloride channel A[more]
BLAST of Carg05427-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P92943|CLCD_ARATH2.4e-4269.53Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
sp|P60300|CLCG_ARATH2.9e-1649.41Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q96282|CLCC_ARATH1.4e-1549.41Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
sp|P51798|CLCN7_HUMAN5.2e-1353.73H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens OX=9606 GN=CLCN7 PE=1 SV=2[more]
sp|O70496|CLCN7_MOUSE5.2e-1353.73H(+)/Cl(-) exchange transporter 7 OS=Mus musculus OX=10090 GN=Clcn7 PE=1 SV=1[more]
BLAST of Carg05427-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMB3|A0A1S3BMB3_CUCME3.1e-6392.54Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1[more]
tr|W9S6F4|W9S6F4_9ROSA2.7e-5177.44Chloride channel protein CLC-d OS=Morus notabilis OX=981085 GN=L484_012356 PE=3 ... [more]
tr|A0A2I4G9B8|A0A2I4G9B8_9ROSI4.6e-5182.31Chloride channel protein OS=Juglans regia OX=51240 GN=LOC109005860 PE=3 SV=1[more]
tr|A0A2P4LW82|A0A2P4LW82_QUESU1.3e-5077.69Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=... [more]
tr|B9RTZ4|B9RTZ4_RICCO3.9e-5078.46Chloride channel protein OS=Ricinus communis OX=3988 GN=RCOM_0914010 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05427Carg05427gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05427-RACarg05427-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05427-RA.three_prime_UTR.1Carg05427-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05427-RA.CDS.5Carg05427-RA.CDS.5CDS
Carg05427-RA.CDS.4Carg05427-RA.CDS.4CDS
Carg05427-RA.CDS.3Carg05427-RA.CDS.3CDS
Carg05427-RA.CDS.2Carg05427-RA.CDS.2CDS
Carg05427-RA.CDS.1Carg05427-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05427-RA.exon.5Carg05427-RA.exon.5exon
Carg05427-RA.exon.4Carg05427-RA.exon.4exon
Carg05427-RA.exon.3Carg05427-RA.exon.3exon
Carg05427-RA.exon.2Carg05427-RA.exon.2exon
Carg05427-RA.exon.1Carg05427-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainSMARTSM00116cbs_1coord: 44..92
e-value: 5.2E-4
score: 29.3
IPR000644CBS domainPFAMPF00571CBScoord: 41..89
e-value: 5.8E-7
score: 29.8
IPR000644CBS domainPROSITEPS51371CBScoord: 41..97
score: 11.175
NoneNo IPR availableGENE3DG3DSA:3.10.580.10coord: 3..90
e-value: 2.2E-10
score: 42.8
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNELcoord: 4..104
NoneNo IPR availablePANTHERPTHR11689:SF92H + /CL - EXCHANGE TRANSPORTER 7coord: 4..104
NoneNo IPR availableCDDcd04591CBS_pair_EriC_assoc_euk_baccoord: 35..88
e-value: 8.6199E-20
score: 78.4481
NoneNo IPR availableSUPERFAMILYSSF54631CBS-domain paircoord: 20..88