Carg05427 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05427
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chloride channel protein
Location	Cucurbita_argyrosperma_scaffold_046 : 327771 .. 329076 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCAGGTAAATGTATACTCGATCTGAGTCCCGAGACTATAATGGACGGGTTATCCTCACTTTTCCATCGAGTTCTGACTCGTTCTTTTGGAATTTCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATTTGCTTGATTACTTTGTTTGGTTTTATGTTATTCATCATTTTTTAGGGAATCGTCGTTTCCGTAATCGTCATATCTTGCATTGTCGTAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGTAGAATACTCACCTTACCACGTTTAATATTTCAAAAACACGTCTCGACATTAATAAGATACAAACACCTCGATGCAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGGTCTCTGACTCTCTATGATGCTTTACTTATCTCATAAAACGATGCATCTATTCGGGCTTCCGAGATTGTAATGCAATGCTAATGCTTCCGTTTAGATTGATTCTTACGATTTTAGTCACTTTAGACGCTGTCGAAACAAGTTCATCATCTAATGTGCCGAAACTGTATAATCTCTTCAAACTCAACTTATTAATCTTGTATATCGTTACGATGGCATGGCAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGATGAACATCATGCAGCAGCTGCCAAGATTAATATGGTCAGATTACTACTAGTTTATGATGCTTTTCTTCATATTCCCATTAGGAAATATATTCTTTATTGTTTGCTGGCTGGGATTCCAATCCCAAACCAGGTAGATATCTAAAGAACAGAGCAGAACAGAGCATTGTATTATATCATAGATTGTAATGATAAGAGTTGGCTTAGTTTATTTTGTTTATGAAAGCTTCAAACTTACGAAAACGTATGTATAGACGACGTAAAAAGAGACCTCGATGACGAACTATCACTACAAAATGGCTGAAATTTGTTGTACAAAAAAGACTGCAACTTATTGAAAGGGAAGGGCTTGGCTTGTGCCCGTTTAAGCGAACGCTAGAACGGACAAGGCCGAAAGCAATAGCCAAAAGCC

mRNA sequence

ATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGATGAACATCATGCAGCAGCTGCCAAGATTAATATGGTCAGATTACTACTAGTTTATGATGCTTTTCTTCATATTCCCATTAGGAAATATATTCTTTATTGTTTGCTGGCTGGGATTCCAATCCCAAACCAGGTAGATATCTAAAGAACAGAGCAGAACAGAGCATTGTATTATATCATAGATTGTAATGATAAGAGTTGGCTTAGTTTATTTTGTTTATGAAAGCTTCAAACTTACGAAAACGTATGTATAGACGACGTAAAAAGAGACCTCGATGACGAACTATCACTACAAAATGGCTGAAATTTGTTGTACAAAAAAGACTGCAACTTATTGAAAGGGAAGGGCTTGGCTTGTGCCCGTTTAAGCGAACGCTAGAACGGACAAGGCCGAAAGCAATAGCCAAAAGCC

Coding sequence (CDS)

ATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGA

Protein sequence

MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVESPLLNGLLVNNTDG

Homology

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BLAST of Carg05427 vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 662 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 721

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 722 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 781

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 782 VESPLLNGLLVNNTDG 797

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BLAST of Carg05427 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 790 VESPLLNGLLVNNTDG 805

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BLAST of Carg05427 vs. NCBI nr
Match: XP_023006123.1 (chloride channel protein CLC-d isoform X2 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 662 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 721

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 722 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 781

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 782 VESPLLNGLLVNNTDG 797

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BLAST of Carg05427 vs. NCBI nr
Match: XP_023006122.1 (chloride channel protein CLC-d isoform X1 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNNTDG
Sbjct: 790 VESPLLNGLLVNNTDG 805

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BLAST of Carg05427 vs. NCBI nr
Match: XP_023548208.1 (chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.4e-67
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 60
           MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL
Sbjct: 670 MPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNL 729

Query: 61  FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGD 120
           FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDR IHT NGD
Sbjct: 730 FRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRSIHTTNGD 789

Query: 121 VESPLLNGLLVNNTDG 137
           VESPLLNGLLVNN DG
Sbjct: 790 VESPLLNGLLVNNADG 805

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BLAST of Carg05427 vs. TAIR10
Match: AT5G26240.1 (chloride channel D)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-43
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+FSEF KP SSKG+ I+DI+L+S+DLEMYIDL PFLNPSPY+VPEDMSLTKVYNLFRQ
Sbjct: 667 RHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQ 726

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMEL-QSTSVRARRRDRRIHTANGDVE 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++ +S A+EL QSTSVR R  +        D  
Sbjct: 727 LGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGRYSET---ATRMDAA 786

Query: 124 SPLLNGLL 131
            PLL+ LL
Sbjct: 787 RPLLDDLL 791

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BLAST of Carg05427 vs. TAIR10
Match: AT5G33280.1 (Voltage-gated chloride channel family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           EF K  S +   I+D+ LS E+L MY+DL PF N SPY V E MSL K   LFR++G+RH
Sbjct: 656 EFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRH 715

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             V+P+ +N   VVG++TR D + E
Sbjct: 716 LLVIPKTSNRPPVVGILTRHDFMPE 740

[Close]

BLAST of Carg05427 vs. TAIR10
Match: AT5G49890.1 (chloride channel C)

HSP 1 Score: 84.0 bits (206), Expect = 8.0e-17
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           +F K    KG+ I+D++LS E++EMY+DL P  N SPY V E +SL K   LFRQLGLRH
Sbjct: 682 DFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRH 741

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             VVP+      +VG++TR D + E
Sbjct: 742 LCVVPKTPGRPPIVGILTRHDFMPE 766

[Close]

BLAST of Carg05427 vs. TAIR10
Match: AT3G27170.1 (chloride channel B)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 20  SIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPR----- 79
           + DD+ ++S ++EMY+DL P  N +PY V E+MS+ K   LFRQ+GLRH  +VP+     
Sbjct: 687 NFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASG 746

Query: 80  PANVVGLITRKDL 88
              VVG++TR+DL
Sbjct: 747 MCPVVGILTRQDL 759

[Close]

BLAST of Carg05427 vs. TAIR10
Match: AT5G40890.1 (chloride channel A)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 20  SIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPR----- 79
           + DD+ ++S ++++Y+DL P  N +PY V + MS+ K   LFR +GLRH  VVP+     
Sbjct: 682 NFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASG 741

Query: 80  PANVVGLITRKDL 88
            + V+G++TR+DL
Sbjct: 742 MSPVIGILTRQDL 754

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BLAST of Carg05427 vs. Swiss-Prot
Match: sp|P92943|CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+FSEF KP SSKG+ I+DI+L+S+DLEMYIDL PFLNPSPY+VPEDMSLTKVYNLFRQ
Sbjct: 667 RHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQ 726

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMEL-QSTSVRARRRDRRIHTANGDVE 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++ +S A+EL QSTSVR R  +        D  
Sbjct: 727 LGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGRYSET---ATRMDAA 786

Query: 124 SPLLNGLL 131
            PLL+ LL
Sbjct: 787 RPLLDDLL 791

[Close]

BLAST of Carg05427 vs. Swiss-Prot
Match: sp|P60300|CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=CLC-G PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-16
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           EF K  S +   I+D+ LS E+L MY+DL PF N SPY V E MSL K   LFR++G+RH
Sbjct: 656 EFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVETMSLAKALILFREVGIRH 715

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             V+P+ +N   VVG++TR D + E
Sbjct: 716 LLVIPKTSNRPPVVGILTRHDFMPE 740

[Close]

BLAST of Carg05427 vs. Swiss-Prot
Match: sp|Q96282|CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 9   EFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRH 68
           +F K    KG+ I+D++LS E++EMY+DL P  N SPY V E +SL K   LFRQLGLRH
Sbjct: 682 DFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLETLSLAKAAILFRQLGLRH 741

Query: 69  AFVVPRPAN---VVGLITRKDLLIE 91
             VVP+      +VG++TR D + E
Sbjct: 742 LCVVPKTPGRPPIVGILTRHDFMPE 766

[Close]

BLAST of Carg05427 vs. Swiss-Prot
Match: sp|P51798|CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens OX=9606 GN=CLCN7 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 21  IDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVG 80
           I  I++S ++ E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH  VV     VVG
Sbjct: 721 IQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNRNQVVG 780

Query: 81  LITRKDL 88
           L+TRKDL
Sbjct: 781 LVTRKDL 787

[Close]

BLAST of Carg05427 vs. Swiss-Prot
Match: sp|O70496|CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus OX=10090 GN=Clcn7 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 21  IDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVG 80
           I  I++S ++ E  +DL  F+NPSPY VP++ SL +V+ LFR LGLRH  VV     VVG
Sbjct: 719 IQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVG 778

Query: 81  LITRKDL 88
           L+TRKDL
Sbjct: 779 LVTRKDL 785

[Close]

BLAST of Carg05427 vs. TrEMBL
Match: tr|A0A1S3BMB3|A0A1S3BMB3_CUCME (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.1e-63
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 3   TRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFR 62
           +RHN +EFVKPASSKGISIDDINLSSEDLEMYIDLLP+LNPSPYIVPEDMSLTKVYNLFR
Sbjct: 664 SRHNLNEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFR 723

Query: 63  QLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVE 122
           QLGLRH FVVPRP+NVVGLITRKDLLIEDSEDSDAMELQSTSVRARR DRR+HT NGDVE
Sbjct: 724 QLGLRHLFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVE 783

Query: 123 SPLLNGLLVNNTDG 137
           SPLLNGLLV+NTDG
Sbjct: 784 SPLLNGLLVSNTDG 797

[Close]

BLAST of Carg05427 vs. TrEMBL
Match: tr|W9S6F4|W9S6F4_9ROSA (Chloride channel protein CLC-d OS=Morus notabilis OX=981085 GN=L484_012356 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RH+ +EFVKPASSKG+SIDDI+LSS+DLEMYIDL PFLNP+PYIVPEDMSLTKVYNLFRQ
Sbjct: 655 RHSLNEFVKPASSKGMSIDDIHLSSDDLEMYIDLAPFLNPNPYIVPEDMSLTKVYNLFRQ 714

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVES 123
           LGLRH FVVPRP+ V+GLITRKDLLIE++EDS  +ELQSTSVRAR+RD+R+  +N + E 
Sbjct: 715 LGLRHIFVVPRPSRVLGLITRKDLLIEENEDSGNLELQSTSVRARQRDKRLVASNEEAER 774

Query: 124 PLLNGLLVNNTDG 137
           PLLNGLLV  T G
Sbjct: 775 PLLNGLLVQQTSG 787

[Close]

BLAST of Carg05427 vs. TrEMBL
Match: tr|A0A2I4G9B8|A0A2I4G9B8_9ROSI (Chloride channel protein OS=Juglans regia OX=51240 GN=LOC109005860 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.6e-51
Identity = 107/130 (82.31%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 2   PTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLF 61
           P RH  SEFVKPASSKGISI+DI+LSS+DLEMYIDL PFLNPSPYIVPEDMSLTKVYNLF
Sbjct: 664 PIRHTPSEFVKPASSKGISIEDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLF 723

Query: 62  RQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDV 121
           RQLGLRH FVVPRP+ V+GLITRKDLLIEDSE+SD +ELQSTSVR+R RDR +   NGD 
Sbjct: 724 RQLGLRHIFVVPRPSRVIGLITRKDLLIEDSEESDTVELQSTSVRSRHRDRSM-LRNGDA 783

Query: 122 ESPLLNGLLV 132
           ESPLLN LLV
Sbjct: 784 ESPLLNVLLV 792

[Close]

BLAST of Carg05427 vs. TrEMBL
Match: tr|A0A2P4LW82|A0A2P4LW82_QUESU (Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 101/130 (77.69%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 2    PTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLF 61
            P RH  SEFVKP SSKG+++DDI+LS +DLEMYIDL PFLNPSPYIVPEDMSLTKVYNLF
Sbjct: 1262 PIRHTPSEFVKPVSSKGLTLDDIHLSPDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLF 1321

Query: 62   RQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDV 121
            RQLGLRH FVVPRP+ V+GLITR+DLLIED+E+S  +ELQSTSVRAR  DRR+   NGD 
Sbjct: 1322 RQLGLRHIFVVPRPSRVIGLITRRDLLIEDNEESATVELQSTSVRARHHDRRVSMGNGDA 1381

Query: 122  ESPLLNGLLV 132
            E PLLNGLLV
Sbjct: 1382 ERPLLNGLLV 1391

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BLAST of Carg05427 vs. TrEMBL
Match: tr|B9RTZ4|B9RTZ4_RICCO (Chloride channel protein OS=Ricinus communis OX=3988 GN=RCOM_0914010 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 102/130 (78.46%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 4   RHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQ 63
           RHNFSEFVKP SSKGI I+DI+LSS+DLEMYIDL PFLNPSPY+VPEDMSLTKVYN+FRQ
Sbjct: 661 RHNFSEFVKPVSSKGICIEDIHLSSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNIFRQ 720

Query: 64  LGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVES 123
           LGLRH FVVPR + V+GLITRKDLLIED EDS  MELQSTSVR   +D+R+ T N DVE 
Sbjct: 721 LGLRHIFVVPRASRVIGLITRKDLLIEDHEDSANMELQSTSVRTHHQDKRMFTRNTDVER 780

Query: 124 PLLNGLLVNN 134
           PLLNGLLV +
Sbjct: 781 PLLNGLLVQD 790

The following BLAST results are available for this feature:

BLAST of Carg05427 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959118.1	2.6e-69	100.00	chloride channel protein CLC-d isoform X2 [Cucurbita moschata]	[more]
XP_022959117.1	2.6e-69	100.00	chloride channel protein CLC-d isoform X1 [Cucurbita moschata]	[more]
XP_023006123.1	2.6e-69	100.00	chloride channel protein CLC-d isoform X2 [Cucurbita maxima]	[more]
XP_023006122.1	2.6e-69	100.00	chloride channel protein CLC-d isoform X1 [Cucurbita maxima]	[more]
XP_023548208.1	1.4e-67	97.79	chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05427 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26240.1	1.3e-43	69.53	chloride channel D	[more]
AT5G33280.1	1.6e-17	49.41	Voltage-gated chloride channel family protein	[more]
AT5G49890.1	8.0e-17	49.41	chloride channel C	[more]
AT3G27170.1	3.2e-13	46.58	chloride channel B	[more]
AT5G40890.1	1.0e-11	41.10	chloride channel A	[more]

BLAST of Carg05427 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92943\|CLCD_ARATH	2.4e-42	69.53	Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=...	[more]
sp\|P60300\|CLCG_ARATH	2.9e-16	49.41	Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q96282\|CLCC_ARATH	1.4e-15	49.41	Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=...	[more]
sp\|P51798\|CLCN7_HUMAN	5.2e-13	53.73	H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens OX=9606 GN=CLCN7 PE=1 SV=2	[more]
sp\|O70496\|CLCN7_MOUSE	5.2e-13	53.73	H(+)/Cl(-) exchange transporter 7 OS=Mus musculus OX=10090 GN=Clcn7 PE=1 SV=1	[more]

BLAST of Carg05427 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMB3\|A0A1S3BMB3_CUCME	3.1e-63	92.54	Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1	[more]
tr\|W9S6F4\|W9S6F4_9ROSA	2.7e-51	77.44	Chloride channel protein CLC-d OS=Morus notabilis OX=981085 GN=L484_012356 PE=3 ...	[more]
tr\|A0A2I4G9B8\|A0A2I4G9B8_9ROSI	4.6e-51	82.31	Chloride channel protein OS=Juglans regia OX=51240 GN=LOC109005860 PE=3 SV=1	[more]
tr\|A0A2P4LW82\|A0A2P4LW82_QUESU	1.3e-50	77.69	Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=...	[more]
tr\|B9RTZ4\|B9RTZ4_RICCO	3.9e-50	78.46	Chloride channel protein OS=Ricinus communis OX=3988 GN=RCOM_0914010 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000644	CBS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05427-RA	Carg05427-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	SMART	SM00116	cbs_1	coord: 44..92 e-value: 5.2E-4 score: 29.3
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 41..89 e-value: 5.8E-7 score: 29.8
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 41..97 score: 11.175
None	No IPR available	GENE3D	G3DSA:3.10.580.10		coord: 3..90 e-value: 2.2E-10 score: 42.8
None	No IPR available	PANTHER	PTHR11689	CHLORIDE CHANNEL	coord: 4..104
None	No IPR available	PANTHER	PTHR11689:SF92	H + /CL - EXCHANGE TRANSPORTER 7	coord: 4..104
None	No IPR available	CDD	cd04591	CBS_pair_EriC_assoc_euk_bac	coord: 35..88 e-value: 8.6199E-20 score: 78.4481
None	No IPR available	SUPERFAMILY	SSF54631	CBS-domain pair	coord: 20..88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05427	CmoCh08G011280	Cucurbita moschata (Rifu)	carcmoB0104
Carg05427	Cla97C06G115520	Watermelon (97103) v2	carwmbB0070
Carg05427	Bhi12G001537	Wax gourd	carwgoB0082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05427	Cucumber (Chinese Long) v3	carcucB0078
Carg05427	Cucumber (Chinese Long) v3	carcucB0083
Carg05427	Bottle gourd (USVL1VR-Ls)	carlsiB061
Carg05427	Bottle gourd (USVL1VR-Ls)	carlsiB063
Carg05427	Melon (DHL92) v3.5.1	carmeB0073
Carg05427	Melon (DHL92) v3.5.1	carmeB0068
Carg05427	Melon (DHL92) v3.5.1	carmeB0071
Carg05427	Melon (DHL92) v3.6.1	carmedB0069
Carg05427	Melon (DHL92) v3.6.1	carmedB0072
Carg05427	Melon (DHL92) v3.6.1	carmedB0074
Carg05427	Watermelon (Charleston Gray)	carwcgB0069
Carg05427	Watermelon (Charleston Gray)	carwcgB0072
Carg05427	Watermelon (Charleston Gray)	carwcgB0073
Carg05427	Watermelon (97103) v1	carwmB0067
Carg05427	Watermelon (97103) v1	carwmB0070
Carg05427	Watermelon (97103) v1	carwmB0073
Carg05427	Watermelon (97103) v2	carwmbB0072
Carg05427	Silver-seed gourd	carcarB077
Carg05427	Silver-seed gourd	carcarB080
Carg05427	Silver-seed gourd	carcarB083
Carg05427	Cucumber (Gy14) v2	carcgybB0071
Carg05427	Cucumber (Gy14) v2	carcgybB0076
Carg05427	Cucumber (Gy14) v1	carcgyB0075
Carg05427	Cucumber (Gy14) v1	carcgyB0080
Carg05427	Cucumber (Gy14) v1	carcgyB0083
Carg05427	Cucurbita maxima (Rimu)	carcmaB0090
Carg05427	Cucurbita maxima (Rimu)	carcmaB0091
Carg05427	Cucurbita maxima (Rimu)	carcmaB0094
Carg05427	Cucurbita maxima (Rimu)	carcmaB0096
Carg05427	Cucurbita moschata (Rifu)	carcmoB0096
Carg05427	Cucurbita moschata (Rifu)	carcmoB0097
Carg05427	Cucurbita moschata (Rifu)	carcmoB0098
Carg05427	Cucurbita moschata (Rifu)	carcmoB0102
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0104
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0099
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0100
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0105
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0106
Carg05427	Cucurbita pepo (Zucchini)	carcpeB0109
Carg05427	Wild cucumber (PI 183967)	carcpiB0074
Carg05427	Wild cucumber (PI 183967)	carcpiB0079
Carg05427	Wild cucumber (PI 183967)	carcpiB0087
Carg05427	Cucumber (Chinese Long) v2	carcuB0071
Carg05427	Cucumber (Chinese Long) v2	carcuB0075
Carg05427	Cucumber (Chinese Long) v2	carcuB0083