Carg05132-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05132-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear cap-binding protein subunit 2
Location	Cucurbita_argyrosperma_scaffold_010 : 50394 .. 54296 (-)
Sequence length	1640

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGTAAATTGCTTCGTTGTTTATTTAATTTTATAGTCGATTCGTTTTCTGCTCCATTGGGTTTCTGGGGTGTATCAACGACGTCTTTACTAGTTCTATTAGGGCATGTTTGAGAGTTTATATGAATTGGATTAGGGAAAAGTTTTGTTTCGATTGATTTTGTTCGTTGCGAGACTTATGTTGGTACCAACTGTTGCCCTTTTAGTTTGGGGGACGGTGGAGTTGGCTGCAGGTGTTTCAAATTGGCTTTTACGTTTACTCCCCTGGTCCTTTATAAACCCCCAATCAAAAAAATGGATAAATGGTTTTGTTCTTGATATTCGTTCTATAGCTTCTGATGGATGTTATGGTTGTGTGGCCATTGTGGCTTAAATATTGAAGAGCATTAAAGGTTTCATTTACTTTGATTGGGAAATCTATTGGAATGAACAATGTTTCGTATATGTAATTAGATGATAGATAATGTTTCTATGATTCTATATGTGACAATCTTCGTGCTTCCAACTTTATCATCTGTAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTCCATAGCTCTTCCTAACTAGTAGAATATCTTGATGTACTTTTTATCAATAGTCTGCCATTGTTGATAGGCCTCCCATTGATACCGCTTGATATGCCTTCCCACGATTTCACCACCCTTCTTAGTGCAAACCATTTTGAATATTTGAAGGTGGTTGGGTGGAAATTGAATGATCAATATTAGATCCATTTCATTCCAAAATTTTAAAGGAATGGGTGCATTTTAAACTTGAGACTGTTAGCTCATTTCATGCCTTTCATACTCATTCCTGCAAGAAATTATATGCATATATCTGCCACTAAGCCTTTCAAATTATGGGAAAATCTCTTAATTGTTGTTTATCTTGTCTTTTCCTTTATTAGATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGTACCATTTATTAATTCAATCTTCGTTTGTTGTCTTCTTTCTTTCTTTCTATATATATATATGACTGCTAATATATTGTTGATTTCTATACCTCCTTTTTTTTTTTTTTTCCCTTTTTTTGCATAATCTAAACACAACTACACAAATCCAGGCTTCATAAAATTAAGTTTATTACATCCTAAGAAGTTCAAACACACGTCATGTCAATTTCTAAAATAGTAGAACTTATTGGGACACATTTTTATAGAGTGTATGTGTATGTATTGGTACTGGTATTGGTGATACTTCATAATAGATAAAACATGTAAATTTACATACACAAAATATACTTCACAAAAAAAAAAAAAAAAAAAACAAAGTCAAGTCAACTAGCAATACAGAATTATTTGGCTGGCTATGGCTTGAGGAAGAAGTTGTGATCCTTATACTTTAGGAATGATCTATGTCTAAGGGTTAGAATATGTTATAGGTCCCTCTTTTGTTTTCCCCACTTTTTAGGTTGGGCTTGTATGGACTAGACTTTAATTTTTTTTTTTTTTCCTTGAGCCATAGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTGTAGGAAAACATCTCCAGAGGGGTCCATAACTGCATTTGTGAGAATGGTCAACTTGCATCACTTATACTAAAATGCGGGGGTGGGCGTTTGAAGTGCTTAGAAGGGGTTTGAAGTGTTAAAAAAATTGTTTTAAGTACTTGAAAAGTCATTCCAAATAGGCCCTTCACCCCCAAAATGAACTTGATTAGTATGTTGAGCTGTGTTACTTTAACGACCTTCACTCTACTGAGTTCCTTGTTGTGGCCTGTCGTTCCTCAAATGGCATGTGATACACACGTTATAAACTTTTGCTGATTTAATATCATAGCTCCATTCATATGTAAAGGCTTTCTAAAAATGCTAACCTTTTGGCTCCTCACGTCCTTTATATTTCTCATCTCCGTTTAGTTTCCTTAATTTATTGAACGTAGAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCGTAAGTTGCTATGAGGAATTCTATGCATAAACATTATTGATTTGATAGGCCTTTATCTTCATGTTTTTCTTTTTCCCTGCAGATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGGTATCAAATTTCTAAAGCTGTTTAATCCTATCTTGAATGAGAATTTATTTGCATTGTTTTTTTATATTTGTCCAATTACATTATTGTTGTTTCAAAAACTAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGTAATTTTTAAATAATGCCTTGTCGTAATTCATCTTTGTGTGCTTAAATTTTGACGTAAAAGGCACCAGACGCTACTGCCGTTCTTTCTGCATAACAAATTAATCCATAGCCATACTATGCGATGCTGTTCTGTCACCAGACCATAAAACAATTCTTATCTACACTTCTTTTCTGTGATTTTGGCTGTATAAGTTCCCATGCTTCAGTATTTGATAGTATATGCTGTAACAGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

mRNA sequence

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

Coding sequence (CDS)

ATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAA

Protein sequence

MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVIDYKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQLVDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH

Homology

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BLAST of Carg05132-RA vs. NCBI nr
Match: XP_022947066.1 (nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 nuclear cap-binding protein subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.6 bits (867), Expect = 2.4e-89
Identity = 249/334 (74.55%), Postives = 249/334 (74.55%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251

Query: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 335
           XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH
Sbjct: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 251

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BLAST of Carg05132-RA vs. NCBI nr
Match: XP_022971080.1 (nuclear cap-binding protein subunit 2-like [Cucurbita maxima])

HSP 1 Score: 334.7 bits (857), Expect = 3.5e-88
Identity = 179/264 (67.80%), Postives = 179/264 (67.80%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 181

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGTDSLGSMPPVMSQHGNHGGS
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGS 181

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BLAST of Carg05132-RA vs. NCBI nr
Match: KGN53785.1 (hypothetical protein Csa_4G129020 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 1.4e-84
Identity = 172/264 (65.15%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILFSF        
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILFSFQE------ 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -------------------------------------------GGYGKLVQKELEAQRQL 187

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGT SLGSM PVM Q+G HGGS
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGS 187

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BLAST of Carg05132-RA vs. NCBI nr
Match: XP_021678904.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis] >XP_021678905.1 nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 312.8 bits (800), Expect = 1.4e-81
Identity = 170/265 (64.15%), Postives = 181/265 (68.30%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP KLS YRDRRF GTQ+EFE AL +STTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPFKLSAYRDRRFSGTQEEFERALQTSTTVYIGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGGQV  L Y+      L  L ++F FL   QVRDEYRTDYDP              
Sbjct: 121 RGRSGGQVNLLCYLLVEILPLYVL-LFFFFLPFLQVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQ+ELE QRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQRELE-QRQL 208

Query: 241 VDYGTDSLGSMPPVMSQH-GNHGGS 265
           VDYGT SLGS PPVM+ H G HGGS
Sbjct: 241 VDYGTGSLGSFPPVMTPHYGRHGGS 208

[Close]

BLAST of Carg05132-RA vs. NCBI nr
Match: XP_022943536.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943537.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943538.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 1.4e-81
Identity = 203/334 (60.78%), Postives = 208/334 (62.28%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIR DFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VDYGT SLGS+P V+ Q+G HGGS                             XXXXXXX
Sbjct: 241 VDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRDDDRHAHESSKXXXXXXX 251

Query: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 335
           XXXXXXXXXX     FRESGDSDXXXXXXRKQRH
Sbjct: 301 XXXXXXXXXXQKNPRFRESGDSDXXXXXXRKQRH 251

[Close]

BLAST of Carg05132-RA vs. TAIR10
Match: AT5G44200.1 (CAP-binding protein 20)

HSP 1 Score: 276.9 bits (707), Expect = 1.6e-74
Identity = 151/266 (56.77%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 183

Query: 241 VDYGTDSLGSMP---PVMSQHGNHGG 264
           VDYGT SLG+ P   P    +G  GG
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGG 183

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BLAST of Carg05132-RA vs. TAIR10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-09
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 32  SSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDA 91
           S +T+YV N+ F  T   ++ LFS  G++ ++ +  D++++   G  FVLY SRED   A
Sbjct: 55  SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114

Query: 92  VKFISGTILDDRPIRV 108
            + +   IL+ R + V
Sbjct: 115 ARSMDAKILNGRKLTV 130

[Close]

BLAST of Carg05132-RA vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-08
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 33  STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAV 92
           S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F+ + S +D   A+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 93  KFISGTILDDRPIRVD 109
           K + G I+D R I V+
Sbjct: 66  KSLDGKIVDGRLIFVE 81

[Close]

BLAST of Carg05132-RA vs. TAIR10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 15  RDRRFQGTQDEFEHALLS--------STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 74
           R   +Q   D +E  L +         TTVY+ N+    T E + EL++  GE+K+  + 
Sbjct: 80  RSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIH 139

Query: 75  LDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVD 109
            DKN + P G   V+Y  R D   A++  +  +LD RP++++
Sbjct: 140 YDKNGR-PSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of Carg05132-RA vs. TAIR10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 55.5 bits (132), Expect = 7.5e-08
Identity = 25/76 (32.89%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 33  STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAV 92
           S+T++V  +SF +TEE + + FS+ G++ K+ + +DK    P GF +V + S+E+ E A+
Sbjct: 20  SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query: 93  KFISGTILDDRPIRVD 109
             ++  ++D R + +D
Sbjct: 80  LELNAQLVDGRVVILD 95

[Close]

BLAST of Carg05132-RA vs. Swiss-Prot
Match: sp|Q9XFD1|NCBP2_ARATH (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.9e-73
Identity = 151/266 (56.77%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 183

Query: 241 VDYGTDSLGSMP---PVMSQHGNHGG 264
           VDYGT SLG+ P   P    +G  GG
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGG 183

[Close]

BLAST of Carg05132-RA vs. Swiss-Prot
Match: sp|Q84L14|NCBP2_ORYSJ (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 6.6e-70
Identity = 142/253 (56.13%), Postives = 155/253 (61.26%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS YRDRRF GTQ+E+E AL +S TVYVGNMSFYTTEEQ YELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           +KIIMGLDKNSKTPCGFCF+LYYSRED EDAVK+ISGT+LDDRPIRVDFDWGF++GRQWG
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 170

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGK+VQKELEAQR+L
Sbjct: 181 ------------------------------------------RGGYGKMVQKELEAQREL 170

Query: 241 VDYGTDSLGSMPP 254
           VDYG     + PP
Sbjct: 241 VDYGGAFQPNAPP 170

[Close]

BLAST of Carg05132-RA vs. Swiss-Prot
Match: sp|Q54KR9|NCBP2_DICDI (Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=ncbp2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-44
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           M+ L+  P     Y D++   TQDEF+HA+  S+T+YVG +SFYTTEEQ+YELFS+ GEI
Sbjct: 1   MSELYSTPQPF--YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           K+IIMGLD+N KTPCGFCFV YYS+ED  D +K+I+G+ LD+R IR D+D+GF++GRQ+G
Sbjct: 61  KRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIKYINGSKLDERLIRCDWDYGFKEGRQYG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDP 167
           RG SGG                            QVRDEYRTDYDP
Sbjct: 121 RGLSGG----------------------------QVRDEYRTDYDP 136

[Close]

BLAST of Carg05132-RA vs. Swiss-Prot
Match: sp|B7P877|NCBP2_IXOSC (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-44
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 11  LSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN 70
           LS YRD+ F+G++ E E  L  STT+YVGNMSFYTTEEQ+YELFS+ G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 71  SKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLF 130
            KTPCGFCFV YY+RED E+A+++++GT LDDR IR D+D GF +GRQ+GRG+SGG    
Sbjct: 65  HKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGFVEGRQFGRGKSGG---- 124

Query: 131 LTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                   QVRDEYRTDYD
Sbjct: 125 ------------------------QVRDEYRTDYD 131

[Close]

BLAST of Carg05132-RA vs. Swiss-Prot
Match: sp|Q3ZBJ1|NCBP2_BOVIN (Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.0e-43
Identity = 88/156 (56.41%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L  S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVL 129
             KT CGFCFV YYSR D E+A+++I+GT LDDR IR D+D GF++GRQ+GRGRSGG   
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGG--- 135

Query: 130 FLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                    QVRDEYR DYD
Sbjct: 136 -------------------------QVRDEYRQDYD 143

[Close]

BLAST of Carg05132-RA vs. TrEMBL
Match: tr|A0A0A0KVX7|A0A0A0KVX7_CUCSA (Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 172/264 (65.15%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILFSF        
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILFSFQE------ 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -------------------------------------------GGYGKLVQKELEAQRQL 187

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGT SLGSM PVM Q+G HGGS
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGS 187

[Close]

BLAST of Carg05132-RA vs. TrEMBL
Match: tr|A0A1S3CLT9|A0A1S3CLT9_CUCME (Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80
Identity = 166/263 (63.12%), Postives = 172/263 (65.40%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLSVYRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 180

Query: 241 VDYGTDSLGSMPPVMSQHGNHGG 264
           VDYGT SLGSM PVM+Q+G HGG
Sbjct: 241 VDYGTGSLGSMAPVMTQYGKHGG 180

[Close]

BLAST of Carg05132-RA vs. TrEMBL
Match: tr|A0A2H5QLH2|A0A2H5QLH2_CITUN (Nuclear cap-binding protein subunit 2 OS=Citrus unshiu OX=55188 GN=CUMW_241310 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 163/264 (61.74%), Postives = 173/264 (65.53%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKD  KLS YRDRRF GTQ+EFE ALL+STTVYVGNMSFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF L+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDIL           
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDIL----------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                              +L  L  +GGYGKLVQ+ELEAQRQL
Sbjct: 181 -----------------------------------LLTLLNFIGGYGKLVQRELEAQRQL 190

Query: 241 VDYGTDSLGSMPPVMS-QHGNHGG 264
           VDYGT SL S  PVM  ++G HGG
Sbjct: 241 VDYGTGSLNSFQPVMQPRYGRHGG 190

[Close]

BLAST of Carg05132-RA vs. TrEMBL
Match: tr|A0A2P5FJ61|A0A2P5FJ61_9ROSA (Nuclear cap-binding protein subunit 2 OS=Trema orientalis OX=63057 GN=TorRG33x02_064120 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 162/265 (61.13%), Postives = 175/265 (66.04%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLS YRDRRF G+Q++FE AL SS TVYVGNMSFYTTEEQ+YELF+RAGEI
Sbjct: 1   MASLFKDPSKLSAYRDRRFPGSQEDFEQALQSSNTVYVGNMSFYTTEEQIYELFTRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFV+YYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVIYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDIL +         
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILLN--------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                            +Y+       GGYGKLVQ+ELEAQRQL
Sbjct: 181 ---------------------------------LYIRK-----GGYGKLVQRELEAQRQL 190

Query: 241 VDYGTDSLGSMPPVMSQH-GNHGGS 265
           VDYG  SLGS PPVM  H G HGGS
Sbjct: 241 VDYGAGSLGSFPPVMPPHYGRHGGS 190

[Close]

BLAST of Carg05132-RA vs. TrEMBL
Match: tr|B9RVU5|B9RVU5_RICCO (Nuclear cap-binding protein subunit 2 OS=Ricinus communis OX=3988 GN=RCOM_1172990 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 163/266 (61.28%), Postives = 174/266 (65.41%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MA LFKDP+KLS YRDR+F G Q+EFEHALL+STTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MALLFKDPAKLSAYRDRKFPGNQEEFEHALLTSTTVYIGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILF          
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILF---------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                     LGGYGKLVQ+ELE QRQL
Sbjct: 181 ------------------------------------------LGGYGKLVQRELE-QRQL 185

Query: 241 VDYGTDSLGSMPPVM--SQHGNHGGS 265
           VDYG  SLGS PPVM   Q+G HGGS
Sbjct: 241 VDYGAGSLGSFPPVMPPPQYGRHGGS 185

The following BLAST results are available for this feature:

BLAST of Carg05132-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947066.1	2.4e-89	74.55	nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 ...	[more]
XP_022971080.1	3.5e-88	67.80	nuclear cap-binding protein subunit 2-like [Cucurbita maxima]	[more]
KGN53785.1	1.4e-84	65.15	hypothetical protein Csa_4G129020 [Cucumis sativus]	[more]
XP_021678904.1	1.4e-81	64.15	nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis] >XP_0...	[more]
XP_022943536.1	1.4e-81	60.78	nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of Carg05132-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44200.1	1.6e-74	56.77	CAP-binding protein 20	[more]
AT3G10400.1	8.9e-09	34.21	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G46020.1	2.0e-08	35.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	2.6e-08	30.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	7.5e-08	32.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg05132-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XFD1\|NCBP2_ARATH	2.9e-73	56.77	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
sp\|Q84L14\|NCBP2_ORYSJ	6.6e-70	56.13	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q54KR9\|NCBP2_DICDI	1.3e-44	53.61	Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=nc...	[more]
sp\|B7P877\|NCBP2_IXOSC	4.8e-44	56.13	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3...	[more]
sp\|Q3ZBJ1\|NCBP2_BOVIN	9.0e-43	56.41	Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1	[more]

BLAST of Carg05132-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVX7\|A0A0A0KVX7_CUCSA	9.2e-85	65.15	Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020...	[more]
tr\|A0A1S3CLT9\|A0A1S3CLT9_CUCME	2.3e-80	63.12	Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE...	[more]
tr\|A0A2H5QLH2\|A0A2H5QLH2_CITUN	5.8e-79	61.74	Nuclear cap-binding protein subunit 2 OS=Citrus unshiu OX=55188 GN=CUMW_241310 P...	[more]
tr\|A0A2P5FJ61\|A0A2P5FJ61_9ROSA	1.7e-78	61.13	Nuclear cap-binding protein subunit 2 OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]
tr\|B9RVU5\|B9RVU5_RICCO	2.9e-78	61.28	Nuclear cap-binding protein subunit 2 OS=Ricinus communis OX=3988 GN=RCOM_117299...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0045292	mRNA cis splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005846	nuclear cap binding complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0000339	RNA cap binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034148	NCBP2_RRM
IPR027157	NCBP2
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000339	RNA cap binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05132	Carg05132	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05132-RA.three_prime_UTR.1	Carg05132-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05132-RA.CDS.8	Carg05132-RA.CDS.8	CDS
Carg05132-RA.CDS.7	Carg05132-RA.CDS.7	CDS
Carg05132-RA.CDS.6	Carg05132-RA.CDS.6	CDS
Carg05132-RA.CDS.5	Carg05132-RA.CDS.5	CDS
Carg05132-RA.CDS.4	Carg05132-RA.CDS.4	CDS
Carg05132-RA.CDS.3	Carg05132-RA.CDS.3	CDS
Carg05132-RA.CDS.2	Carg05132-RA.CDS.2	CDS
Carg05132-RA.CDS.1	Carg05132-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05132-RA.five_prime_UTR.1	Carg05132-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05132-RA.exon.8	Carg05132-RA.exon.8	exon
Carg05132-RA.exon.7	Carg05132-RA.exon.7	exon
Carg05132-RA.exon.6	Carg05132-RA.exon.6	exon
Carg05132-RA.exon.5	Carg05132-RA.exon.5	exon
Carg05132-RA.exon.4	Carg05132-RA.exon.4	exon
Carg05132-RA.exon.3	Carg05132-RA.exon.3	exon
Carg05132-RA.exon.2	Carg05132-RA.exon.2	exon
Carg05132-RA.exon.1	Carg05132-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05132-RA	Carg05132-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 7.3E-22 score: 88.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 7.2E-13 score: 48.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 15.579
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 6..120 e-value: 5.4E-26 score: 93.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..334
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 1..128
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..113 e-value: 4.45073E-49 score: 160.019
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 29..127