Carg05132 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05132
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear cap-binding protein subunit 2
Location	Cucurbita_argyrosperma_scaffold_010 : 50394 .. 54296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGTAAATTGCTTCGTTGTTTATTTAATTTTATAGTCGATTCGTTTTCTGCTCCATTGGGTTTCTGGGGTGTATCAACGACGTCTTTACTAGTTCTATTAGGGCATGTTTGAGAGTTTATATGAATTGGATTAGGGAAAAGTTTTGTTTCGATTGATTTTGTTCGTTGCGAGACTTATGTTGGTACCAACTGTTGCCCTTTTAGTTTGGGGGACGGTGGAGTTGGCTGCAGGTGTTTCAAATTGGCTTTTACGTTTACTCCCCTGGTCCTTTATAAACCCCCAATCAAAAAAATGGATAAATGGTTTTGTTCTTGATATTCGTTCTATAGCTTCTGATGGATGTTATGGTTGTGTGGCCATTGTGGCTTAAATATTGAAGAGCATTAAAGGTTTCATTTACTTTGATTGGGAAATCTATTGGAATGAACAATGTTTCGTATATGTAATTAGATGATAGATAATGTTTCTATGATTCTATATGTGACAATCTTCGTGCTTCCAACTTTATCATCTGTAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTCCATAGCTCTTCCTAACTAGTAGAATATCTTGATGTACTTTTTATCAATAGTCTGCCATTGTTGATAGGCCTCCCATTGATACCGCTTGATATGCCTTCCCACGATTTCACCACCCTTCTTAGTGCAAACCATTTTGAATATTTGAAGGTGGTTGGGTGGAAATTGAATGATCAATATTAGATCCATTTCATTCCAAAATTTTAAAGGAATGGGTGCATTTTAAACTTGAGACTGTTAGCTCATTTCATGCCTTTCATACTCATTCCTGCAAGAAATTATATGCATATATCTGCCACTAAGCCTTTCAAATTATGGGAAAATCTCTTAATTGTTGTTTATCTTGTCTTTTCCTTTATTAGATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGTACCATTTATTAATTCAATCTTCGTTTGTTGTCTTCTTTCTTTCTTTCTATATATATATATGACTGCTAATATATTGTTGATTTCTATACCTCCTTTTTTTTTTTTTTTCCCTTTTTTTGCATAATCTAAACACAACTACACAAATCCAGGCTTCATAAAATTAAGTTTATTACATCCTAAGAAGTTCAAACACACGTCATGTCAATTTCTAAAATAGTAGAACTTATTGGGACACATTTTTATAGAGTGTATGTGTATGTATTGGTACTGGTATTGGTGATACTTCATAATAGATAAAACATGTAAATTTACATACACAAAATATACTTCACAAAAAAAAAAAAAAAAAAAACAAAGTCAAGTCAACTAGCAATACAGAATTATTTGGCTGGCTATGGCTTGAGGAAGAAGTTGTGATCCTTATACTTTAGGAATGATCTATGTCTAAGGGTTAGAATATGTTATAGGTCCCTCTTTTGTTTTCCCCACTTTTTAGGTTGGGCTTGTATGGACTAGACTTTAATTTTTTTTTTTTTTCCTTGAGCCATAGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTGTAGGAAAACATCTCCAGAGGGGTCCATAACTGCATTTGTGAGAATGGTCAACTTGCATCACTTATACTAAAATGCGGGGGTGGGCGTTTGAAGTGCTTAGAAGGGGTTTGAAGTGTTAAAAAAATTGTTTTAAGTACTTGAAAAGTCATTCCAAATAGGCCCTTCACCCCCAAAATGAACTTGATTAGTATGTTGAGCTGTGTTACTTTAACGACCTTCACTCTACTGAGTTCCTTGTTGTGGCCTGTCGTTCCTCAAATGGCATGTGATACACACGTTATAAACTTTTGCTGATTTAATATCATAGCTCCATTCATATGTAAAGGCTTTCTAAAAATGCTAACCTTTTGGCTCCTCACGTCCTTTATATTTCTCATCTCCGTTTAGTTTCCTTAATTTATTGAACGTAGAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCGTAAGTTGCTATGAGGAATTCTATGCATAAACATTATTGATTTGATAGGCCTTTATCTTCATGTTTTTCTTTTTCCCTGCAGATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGGTATCAAATTTCTAAAGCTGTTTAATCCTATCTTGAATGAGAATTTATTTGCATTGTTTTTTTATATTTGTCCAATTACATTATTGTTGTTTCAAAAACTAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGTAATTTTTAAATAATGCCTTGTCGTAATTCATCTTTGTGTGCTTAAATTTTGACGTAAAAGGCACCAGACGCTACTGCCGTTCTTTCTGCATAACAAATTAATCCATAGCCATACTATGCGATGCTGTTCTGTCACCAGACCATAAAACAATTCTTATCTACACTTCTTTTCTGTGATTTTGGCTGTATAAGTTCCCATGCTTCAGTATTTGATAGTATATGCTGTAACAGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

mRNA sequence

TATTATTGCATTACGCAGCGCTAGGGAAGAAGCGCGCGAGCAGCATTGGGCGACTGAGCGCACCCAACGAGTTCAGCTCTTAGGCAAAATCCAATCCGAAATTCACCTGCTACTTCGATTTGAAGCGCCTCTAATCTCTGTGCCTCTACCTCCTCCTTTTTCCCTTCCGTTTCTCGATCTTCGTGATTAAATTATTGCCTAATTTCTGAAATATAATGCTATAGTTACTTCGGCTGAAGTGGGGTTTCGAGTTGTAGCGCAGATTTTGTTATTCTAGGGTTCATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAACCAGAGTGTCGTCGTCATATTATCATGTGAGGAACCTTAAATTGGCATTGCTTAGTTCAGCACAAATGATAAGGGACGACAAAACTAGCGAGTTATCTTTTTTTCATGTCACGAGGTACTTTTTCTTAGTTTAATGAAGGAATGGCTTTAATTGGTGTCATTGTCTGTGCTGTTTATTTATAAGAATCAAGTAGGCATGTTGTCGAACTATGTTCTAAAAGATAAATTATACAACTCTGAACAGAAAGTACTATCAGCTAGTGTGTTTTTGTGCATTGAATTGAATTTGAATGTAGTTGAGAGGGAAAACTACCATTCATTTTAGTATCAAAACTACAATTTGTTTTTGTTTG

Coding sequence (CDS)

ATGGCTTCACTGTTCAAGGACCCATCAAAGCTCTCTGTTTATCGGGATAGAAGATTTCAGGGAACACAAGATGAATTTGAACATGCACTGCTGTCTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACGACTGAAGAACAAGTTTATGAGCTCTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACTGAGGATGCTGTTAAATTTATTAGTGGAACAATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGACAATGGGGCCGTGGTCGAAGTGGTGGGCAGGTACTGTTTCTGACCTATGTTACTTTCACGACTCGGAGTTTACCATCACTTCCTGTTTATTTTCTTTTTCTTTTTTGTACACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTCTTTTAATACTGTTACTCACGTTATAGATTATAAACCCTTGAGTCTGATGCTCTGTTGCATTTTTTTGGAATTAGACATGTTTTTTGGCATGTTGGACATGTGTCTGGATGAATCTGTGTCCAGCGAAGTGTACATGCTTCCTACATTACAACTACTAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGATTCACTAGGCTCTATGCCGCCAGTCATGTCTCAGCATGGAAACCATGGTGGAAGCCACGGACATGGGTATCGTCATGGTAGAGATTACCACCACCGTAAGCGCCACCGGGATGATGATCGCCATGCCCATGAAAGCTCTAAGAGAACTTCAGATTTTGAGTCTAGAAGAAACTCCAATCATGAATCCAGACCGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGATCGAAAGCAGCGACACTAA

Protein sequence

MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVIDYKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQLVDYGTDSLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFESRRNSNHESRPEKNPRFRESGDSDEEDDDDRKQRH

Homology

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BLAST of Carg05132 vs. NCBI nr
Match: XP_022947066.1 (nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 nuclear cap-binding protein subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.6 bits (867), Expect = 2.4e-89
Identity = 249/334 (74.55%), Postives = 249/334 (74.55%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251

Query: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 335
           XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH
Sbjct: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 251

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BLAST of Carg05132 vs. NCBI nr
Match: XP_022971080.1 (nuclear cap-binding protein subunit 2-like [Cucurbita maxima])

HSP 1 Score: 334.7 bits (857), Expect = 3.5e-88
Identity = 179/264 (67.80%), Postives = 179/264 (67.80%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 181

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGTDSLGSMPPVMSQHGNHGGS
Sbjct: 241 VDYGTDSLGSMPPVMSQHGNHGGS 181

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BLAST of Carg05132 vs. NCBI nr
Match: KGN53785.1 (hypothetical protein Csa_4G129020 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 1.4e-84
Identity = 172/264 (65.15%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILFSF        
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILFSFQE------ 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -------------------------------------------GGYGKLVQKELEAQRQL 187

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGT SLGSM PVM Q+G HGGS
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGS 187

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BLAST of Carg05132 vs. NCBI nr
Match: XP_021678904.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis] >XP_021678905.1 nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 312.8 bits (800), Expect = 1.4e-81
Identity = 170/265 (64.15%), Postives = 181/265 (68.30%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP KLS YRDRRF GTQ+EFE AL +STTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPFKLSAYRDRRFSGTQEEFERALQTSTTVYIGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGGQV  L Y+      L  L ++F FL   QVRDEYRTDYDP              
Sbjct: 121 RGRSGGQVNLLCYLLVEILPLYVL-LFFFFLPFLQVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQ+ELE QRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQRELE-QRQL 208

Query: 241 VDYGTDSLGSMPPVMSQH-GNHGGS 265
           VDYGT SLGS PPVM+ H G HGGS
Sbjct: 241 VDYGTGSLGSFPPVMTPHYGRHGGS 208

[Close]

BLAST of Carg05132 vs. NCBI nr
Match: XP_022943536.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943537.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943538.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 312.8 bits (800), Expect = 1.4e-81
Identity = 203/334 (60.78%), Postives = 208/334 (62.28%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIR DFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 240

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           VDYGT SLGS+P V+ Q+G HGGS                             XXXXXXX
Sbjct: 241 VDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRDDDRHAHESSKXXXXXXX 251

Query: 301 XXXXXXXXXXXXXXXFRESGDSDXXXXXXRKQRH 335
           XXXXXXXXXX     FRESGDSDXXXXXXRKQRH
Sbjct: 301 XXXXXXXXXXQKNPRFRESGDSDXXXXXXRKQRH 251

[Close]

BLAST of Carg05132 vs. TAIR10
Match: AT5G44200.1 (CAP-binding protein 20)

HSP 1 Score: 276.9 bits (707), Expect = 1.6e-74
Identity = 151/266 (56.77%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 183

Query: 241 VDYGTDSLGSMP---PVMSQHGNHGG 264
           VDYGT SLG+ P   P    +G  GG
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGG 183

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BLAST of Carg05132 vs. TAIR10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-09
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 32  SSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDA 91
           S +T+YV N+ F  T   ++ LFS  G++ ++ +  D++++   G  FVLY SRED   A
Sbjct: 55  SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114

Query: 92  VKFISGTILDDRPIRV 108
            + +   IL+ R + V
Sbjct: 115 ARSMDAKILNGRKLTV 130

[Close]

BLAST of Carg05132 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-08
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 33  STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAV 92
           S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F+ + S +D   A+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 93  KFISGTILDDRPIRVD 109
           K + G I+D R I V+
Sbjct: 66  KSLDGKIVDGRLIFVE 81

[Close]

BLAST of Carg05132 vs. TAIR10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 15  RDRRFQGTQDEFEHALLS--------STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 74
           R   +Q   D +E  L +         TTVY+ N+    T E + EL++  GE+K+  + 
Sbjct: 80  RSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIH 139

Query: 75  LDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVD 109
            DKN + P G   V+Y  R D   A++  +  +LD RP++++
Sbjct: 140 YDKNGR-PSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of Carg05132 vs. TAIR10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 55.5 bits (132), Expect = 7.5e-08
Identity = 25/76 (32.89%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 33  STTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAV 92
           S+T++V  +SF +TEE + + FS+ G++ K+ + +DK    P GF +V + S+E+ E A+
Sbjct: 20  SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query: 93  KFISGTILDDRPIRVD 109
             ++  ++D R + +D
Sbjct: 80  LELNAQLVDGRVVILD 95

[Close]

BLAST of Carg05132 vs. Swiss-Prot
Match: sp|Q9XFD1|NCBP2_ARATH (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.9e-73
Identity = 151/266 (56.77%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL +STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDP-------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -----------------------------------------ARGGYGKLVQKELEAQRQL 183

Query: 241 VDYGTDSLGSMP---PVMSQHGNHGG 264
           VDYGT SLG+ P   P    +G  GG
Sbjct: 241 VDYGTGSLGAYPQAAPTNYGNGRRGG 183

[Close]

BLAST of Carg05132 vs. Swiss-Prot
Match: sp|Q84L14|NCBP2_ORYSJ (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 6.6e-70
Identity = 142/253 (56.13%), Postives = 155/253 (61.26%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS YRDRRF GTQ+E+E AL +S TVYVGNMSFYTTEEQ YELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           +KIIMGLDKNSKTPCGFCF+LYYSRED EDAVK+ISGT+LDDRPIRVDFDWGF++GRQWG
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 170

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGK+VQKELEAQR+L
Sbjct: 181 ------------------------------------------RGGYGKMVQKELEAQREL 170

Query: 241 VDYGTDSLGSMPP 254
           VDYG     + PP
Sbjct: 241 VDYGGAFQPNAPP 170

[Close]

BLAST of Carg05132 vs. Swiss-Prot
Match: sp|Q54KR9|NCBP2_DICDI (Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=ncbp2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-44
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           M+ L+  P     Y D++   TQDEF+HA+  S+T+YVG +SFYTTEEQ+YELFS+ GEI
Sbjct: 1   MSELYSTPQPF--YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           K+IIMGLD+N KTPCGFCFV YYS+ED  D +K+I+G+ LD+R IR D+D+GF++GRQ+G
Sbjct: 61  KRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIKYINGSKLDERLIRCDWDYGFKEGRQYG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDP 167
           RG SGG                            QVRDEYRTDYDP
Sbjct: 121 RGLSGG----------------------------QVRDEYRTDYDP 136

[Close]

BLAST of Carg05132 vs. Swiss-Prot
Match: sp|B7P877|NCBP2_IXOSC (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.8e-44
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 11  LSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN 70
           LS YRD+ F+G++ E E  L  STT+YVGNMSFYTTEEQ+YELFS+ G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 71  SKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLF 130
            KTPCGFCFV YY+RED E+A+++++GT LDDR IR D+D GF +GRQ+GRG+SGG    
Sbjct: 65  HKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGFVEGRQFGRGKSGG---- 124

Query: 131 LTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                   QVRDEYRTDYD
Sbjct: 125 ------------------------QVRDEYRTDYD 131

[Close]

BLAST of Carg05132 vs. Swiss-Prot
Match: sp|Q3ZBJ1|NCBP2_BOVIN (Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.0e-43
Identity = 88/156 (56.41%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L  S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVL 129
             KT CGFCFV YYSR D E+A+++I+GT LDDR IR D+D GF++GRQ+GRGRSGG   
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGG--- 135

Query: 130 FLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYD 166
                                    QVRDEYR DYD
Sbjct: 136 -------------------------QVRDEYRQDYD 143

[Close]

BLAST of Carg05132 vs. TrEMBL
Match: tr|A0A0A0KVX7|A0A0A0KVX7_CUCSA (Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 172/264 (65.15%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILFSF        
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILFSFQE------ 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 -------------------------------------------GGYGKLVQKELEAQRQL 187

Query: 241 VDYGTDSLGSMPPVMSQHGNHGGS 265
           VDYGT SLGSM PVM Q+G HGGS
Sbjct: 241 VDYGTGSLGSMAPVMPQYGKHGGS 187

[Close]

BLAST of Carg05132 vs. TrEMBL
Match: tr|A0A1S3CLT9|A0A1S3CLT9_CUCME (Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.3e-80
Identity = 166/263 (63.12%), Postives = 172/263 (65.40%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLSVYRDRRF G+QDEFE AL +STTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDP              
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPG------------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                      GGYGKLVQKELEAQRQL
Sbjct: 181 ------------------------------------------RGGYGKLVQKELEAQRQL 180

Query: 241 VDYGTDSLGSMPPVMSQHGNHGG 264
           VDYGT SLGSM PVM+Q+G HGG
Sbjct: 241 VDYGTGSLGSMAPVMTQYGKHGG 180

[Close]

BLAST of Carg05132 vs. TrEMBL
Match: tr|A0A2H5QLH2|A0A2H5QLH2_CITUN (Nuclear cap-binding protein subunit 2 OS=Citrus unshiu OX=55188 GN=CUMW_241310 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 163/264 (61.74%), Postives = 173/264 (65.53%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKD  KLS YRDRRF GTQ+EFE ALL+STTVYVGNMSFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF L+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDIL           
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDIL----------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                              +L  L  +GGYGKLVQ+ELEAQRQL
Sbjct: 181 -----------------------------------LLTLLNFIGGYGKLVQRELEAQRQL 190

Query: 241 VDYGTDSLGSMPPVMS-QHGNHGG 264
           VDYGT SL S  PVM  ++G HGG
Sbjct: 241 VDYGTGSLNSFQPVMQPRYGRHGG 190

[Close]

BLAST of Carg05132 vs. TrEMBL
Match: tr|A0A2P5FJ61|A0A2P5FJ61_9ROSA (Nuclear cap-binding protein subunit 2 OS=Trema orientalis OX=63057 GN=TorRG33x02_064120 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 162/265 (61.13%), Postives = 175/265 (66.04%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLS YRDRRF G+Q++FE AL SS TVYVGNMSFYTTEEQ+YELF+RAGEI
Sbjct: 1   MASLFKDPSKLSAYRDRRFPGSQEDFEQALQSSNTVYVGNMSFYTTEEQIYELFTRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFV+YYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVIYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDIL +         
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILLN--------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                            +Y+       GGYGKLVQ+ELEAQRQL
Sbjct: 181 ---------------------------------LYIRK-----GGYGKLVQRELEAQRQL 190

Query: 241 VDYGTDSLGSMPPVMSQH-GNHGGS 265
           VDYG  SLGS PPVM  H G HGGS
Sbjct: 241 VDYGAGSLGSFPPVMPPHYGRHGGS 190

[Close]

BLAST of Carg05132 vs. TrEMBL
Match: tr|B9RVU5|B9RVU5_RICCO (Nuclear cap-binding protein subunit 2 OS=Ricinus communis OX=3988 GN=RCOM_1172990 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.9e-78
Identity = 163/266 (61.28%), Postives = 174/266 (65.41%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MA LFKDP+KLS YRDR+F G Q+EFEHALL+STTVY+GNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MALLFKDPAKLSAYRDRKFPGNQEEFEHALLTSTTVYIGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVK+ISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVID 180
           RGRSGG                            QVRDEYRTDYDPDILF          
Sbjct: 121 RGRSGG----------------------------QVRDEYRTDYDPDILF---------- 180

Query: 181 YKPLSLMLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQL 240
                                                     LGGYGKLVQ+ELE QRQL
Sbjct: 181 ------------------------------------------LGGYGKLVQRELE-QRQL 185

Query: 241 VDYGTDSLGSMPPVM--SQHGNHGGS 265
           VDYG  SLGS PPVM   Q+G HGGS
Sbjct: 241 VDYGAGSLGSFPPVMPPPQYGRHGGS 185

The following BLAST results are available for this feature:

BLAST of Carg05132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947066.1	2.4e-89	74.55	nuclear cap-binding protein subunit 2-like [Cucurbita moschata] >XP_023534312.1 ...	[more]
XP_022971080.1	3.5e-88	67.80	nuclear cap-binding protein subunit 2-like [Cucurbita maxima]	[more]
KGN53785.1	1.4e-84	65.15	hypothetical protein Csa_4G129020 [Cucumis sativus]	[more]
XP_021678904.1	1.4e-81	64.15	nuclear cap-binding protein subunit 2-like isoform X1 [Hevea brasiliensis] >XP_0...	[more]
XP_022943536.1	1.4e-81	60.78	nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of Carg05132 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44200.1	1.6e-74	56.77	CAP-binding protein 20	[more]
AT3G10400.1	8.9e-09	34.21	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G46020.1	2.0e-08	35.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	2.6e-08	30.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	7.5e-08	32.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg05132 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XFD1\|NCBP2_ARATH	2.9e-73	56.77	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
sp\|Q84L14\|NCBP2_ORYSJ	6.6e-70	56.13	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q54KR9\|NCBP2_DICDI	1.3e-44	53.61	Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum OX=44689 GN=nc...	[more]
sp\|B7P877\|NCBP2_IXOSC	4.8e-44	56.13	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3...	[more]
sp\|Q3ZBJ1\|NCBP2_BOVIN	9.0e-43	56.41	Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1	[more]

BLAST of Carg05132 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVX7\|A0A0A0KVX7_CUCSA	9.2e-85	65.15	Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020...	[more]
tr\|A0A1S3CLT9\|A0A1S3CLT9_CUCME	2.3e-80	63.12	Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE...	[more]
tr\|A0A2H5QLH2\|A0A2H5QLH2_CITUN	5.8e-79	61.74	Nuclear cap-binding protein subunit 2 OS=Citrus unshiu OX=55188 GN=CUMW_241310 P...	[more]
tr\|A0A2P5FJ61\|A0A2P5FJ61_9ROSA	1.7e-78	61.13	Nuclear cap-binding protein subunit 2 OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]
tr\|B9RVU5\|B9RVU5_RICCO	2.9e-78	61.28	Nuclear cap-binding protein subunit 2 OS=Ricinus communis OX=3988 GN=RCOM_117299...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045292	mRNA cis splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005846	nuclear cap binding complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0000339	RNA cap binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034148	NCBP2_RRM
IPR027157	NCBP2
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0000339	RNA cap binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05132-RA	Carg05132-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 7.3E-22 score: 88.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 7.2E-13 score: 48.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 15.579
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 6..120 e-value: 5.4E-26 score: 93.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..334
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 1..128
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..113 e-value: 4.45073E-49 score: 160.019
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 29..127

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05132	CmaCh02G002040	Cucurbita maxima (Rimu)	carcmaB1124
Carg05132	CmaCh20G005690	Cucurbita maxima (Rimu)	carcmaB1123
Carg05132	CmoCh20G006600	Cucurbita moschata (Rifu)	carcmoB1092
Carg05132	CmoCh02G002080	Cucurbita moschata (Rifu)	carcmoB1094
Carg05132	Lsi10G000730	Bottle gourd (USVL1VR-Ls)	carlsiB739
Carg05132	Cp4.1LG16g04050	Cucurbita pepo (Zucchini)	carcpeB1133
Carg05132	Cp4.1LG05g14070	Cucurbita pepo (Zucchini)	carcpeB1139
Carg05132	Bhi10G001053	Wax gourd	carwgoB0942

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05132	Carg16083	Silver-seed gourd	carcarB372

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05132	Cucumber (Gy14) v2	carcgybB0794
Carg05132	Cucumber (Gy14) v1	carcgyB0917
Carg05132	Wild cucumber (PI 183967)	carcpiB0840
Carg05132	Cucumber (Chinese Long) v2	carcuB0820
Carg05132	Cucumber (Chinese Long) v3	carcucB0844
Carg05132	Melon (DHL92) v3.5.1	carmeB0799
Carg05132	Melon (DHL92) v3.6.1	carmedB0811
Carg05132	Watermelon (Charleston Gray)	carwcgB0779
Carg05132	Watermelon (97103) v1	carwmB0811
Carg05132	Watermelon (97103) v2	carwmbB0845