Carg05129-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCGTAGCCTATACTTAGCAGCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTTGGCTAAATGGGCTGTTTTTTTGAAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA MSFRRKNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKINKPLLLGQCGGGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAEEEEGEGGGLADGGVAVTLVRENGGQDLEAEDGAGGEEVFLMAFWVGVFVGFPAFCNSGCWDPRSSASAASAC
BLAST of Carg05129-RA vs. NCBI nr
Match: PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientalis]) HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21 Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 0
BLAST of Carg05129-RA vs. NCBI nr
Match: PON44448.1 (hypothetical protein PanWU01x14_266830 [Parasponia andersonii]) HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18 Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 0
BLAST of Carg05129-RA vs. NCBI nr
Match: PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientalis]) HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 0
BLAST of Carg05129-RA vs. NCBI nr
Match: KGN49259.1 (hypothetical protein Csa_6G518140 [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07 Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 0
BLAST of Carg05129-RA vs. TrEMBL
Match: tr|A0A2P5FJ60|A0A2P5FJ60_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_064250 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22 Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 0
BLAST of Carg05129-RA vs. TrEMBL
Match: tr|A0A2P5B6P1|A0A2P5B6P1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18 Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 0
BLAST of Carg05129-RA vs. TrEMBL
Match: tr|A0A2P5CHX1|A0A2P5CHX1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284420 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14 Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 0
BLAST of Carg05129-RA vs. TrEMBL
Match: tr|A0A0A0KK92|A0A0A0KK92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07 Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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