Carg05129 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05129
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_010 : 39498 .. 40089 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCGTAGCCTATACTTAGCAGCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTTGGCTAAATGGGCTGTTTTTTTGAAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA

mRNA sequence

ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA

Coding sequence (CDS)

ATGTCGTTTAGAAGGAAAAACAATAAACAAGAAGCTGCACAACACACCAATTCCGACAGGCAACACAACCAAAAGCTCCCTTGTTTCATCGGACGGAGTCGGATAGAAACACTTCACAACATTCTCGTCAAACAGAGCAACAGCGACAAACACCAACAGAGAACAAAAGGCATGAAAAAAATCAATAAACCCCTCCTCCTTGGGCAGTGTGGTGGAGGCATCAATGACCCACAAGCCCTGAAACGTGGCCACCCCATATCGGACTTTGCCGCGTTCGTCCCGGAAACTGTCGGTGAAGAGGAGGAAAAAACAGGACAGGGCGCAGAGGAGGAGGAGGGCGAGGGTGGAGGCTTGGCTGACGGTGGTGTGGCAGTTACCTTGGTGCGTGAAAATGGGGGACAGGATTTGGAAGCCGAGGACGGTGCCGGTGGGGAGGAGGTCTTTCTAATGGCTTTTTGGGTCGGCGTTTTTGTTGGCTTTCCGGCGTTCTGTAACAGTGGCTGCTGGGATCCTCGGAGCAGCGCCTCGGCGGCCAGTGCTTGCTGA

Protein sequence

MSFRRKNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKINKPLLLGQCGGGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAEEEEGEGGGLADGGVAVTLVRENGGQDLEAEDGAGGEEVFLMAFWVGVFVGFPAFCNSGCWDPRSSASAASAC

Homology

[Close]

BLAST of Carg05129 vs. NCBI nr
Match: PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientalis])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKIN--K 65
           + NK++AA     DR  ++KL C +GR R E L +IL+++ +  +++QR + + +I+  K
Sbjct: 6   ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65

Query: 66  PLLLGQCG-------GGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXX 125
           P+L G  G         ++DPQA +RG PI+D AA VP  VGE EE+ G GA        
Sbjct: 66  PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADGGVAVTLVRENGGQDLEAEDGAGGEEV 148
           G A GG A+ LV E+ GQ+LE+EDG GGEEV
Sbjct: 126 GPAHGGAALALVSESRGQNLESEDGTGGEEV 156

[Close]

BLAST of Carg05129 vs. NCBI nr
Match: PON44448.1 (hypothetical protein PanWU01x14_266830 [Parasponia andersonii])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKIN--K 65
           + NK++AA     DR  ++KL   +G  R E L +IL+++ +  +++QR + + +I+  K
Sbjct: 6   ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65

Query: 66  PLLLGQCG-------GGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXX 125
           P+L G  G         ++DPQA +RG PI+D A  VP  VGE EE+ G GA        
Sbjct: 66  PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADGGVAVTLVRENGGQDLEAEDGAGGEEV 148
           G A GG A+ LV E+ GQ+LE+E+G GGEEV
Sbjct: 126 GPAHGGAALALVSESRGQNLESENGTGGEEV 156

[Close]

BLAST of Carg05129 vs. NCBI nr
Match: PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientalis])

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKINK-- 65
           KN+KQ     TN +RQ  + L   I R  I+  H+IL+KQSN  KH+   + M +I+K  
Sbjct: 34  KNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHEIDKLH 93

Query: 66  ----PLLLGQCGGGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXXGLA 125
                LL  + GG ++ PQ   RG  I+  +  VP+T+ E E+K G+ A          A
Sbjct: 94  TILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKARGHEPA 153

Query: 126 DGGVAVTLVRENGGQDLEAED 141
           D  VA+ LV ENG Q LE+ED
Sbjct: 154 D-RVALALVAENGSQKLESED 173

[Close]

BLAST of Carg05129 vs. NCBI nr
Match: KGN49259.1 (hypothetical protein Csa_6G518140 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MSFRRKNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKK 60
          M+  RK+NKQ   +H N +RQ  Q L   I   R++T+H+IL+KQSNS ++Q R + M++
Sbjct: 1  MASGRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQE 60

Query: 61 INKPLLL------GQCGGGINDPQALKRGHPISD 89
          INKP  +       +  G ++DPQA + G  I +
Sbjct: 61 INKPQPITSRDGRRKFHGAVDDPQASESGESIGN 94

[Close]

BLAST of Carg05129 vs. TrEMBL
Match: tr|A0A2P5FJ60|A0A2P5FJ60_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_064250 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKIN--K 65
           + NK++AA     DR  ++KL C +GR R E L +IL+++ +  +++QR + + +I+  K
Sbjct: 6   ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65

Query: 66  PLLLGQCG-------GGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXX 125
           P+L G  G         ++DPQA +RG PI+D AA VP  VGE EE+ G GA        
Sbjct: 66  PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADGGVAVTLVRENGGQDLEAEDGAGGEEV 148
           G A GG A+ LV E+ GQ+LE+EDG GGEEV
Sbjct: 126 GPAHGGAALALVSESRGQNLESEDGTGGEEV 156

[Close]

BLAST of Carg05129 vs. TrEMBL
Match: tr|A0A2P5B6P1|A0A2P5B6P1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKIN--K 65
           + NK++AA     DR  ++KL   +G  R E L +IL+++ +  +++QR + + +I+  K
Sbjct: 6   ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65

Query: 66  PLLLGQCG-------GGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXX 125
           P+L G  G         ++DPQA +RG PI+D A  VP  VGE EE+ G GA        
Sbjct: 66  PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADGGVAVTLVRENGGQDLEAEDGAGGEEV 148
           G A GG A+ LV E+ GQ+LE+E+G GGEEV
Sbjct: 126 GPAHGGAALALVSESRGQNLESENGTGGEEV 156

[Close]

BLAST of Carg05129 vs. TrEMBL
Match: tr|A0A2P5CHX1|A0A2P5CHX1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284420 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14
Identity = 55/141 (39.01%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 6   KNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKKINK-- 65
           KN+KQ     TN +RQ  + L   I R  I+  H+IL+KQSN  KH+   + M +I+K  
Sbjct: 34  KNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHEIDKLH 93

Query: 66  ----PLLLGQCGGGINDPQALKRGHPISDFAAFVPETVGEEEEKTGQGAXXXXXXXXGLA 125
                LL  + GG ++ PQ   RG  I+  +  VP+T+ E E+K G+ A          A
Sbjct: 94  TILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKARGHEPA 153

Query: 126 DGGVAVTLVRENGGQDLEAED 141
           D  VA+ LV ENG Q LE+ED
Sbjct: 154 D-RVALALVAENGSQKLESED 173

[Close]

BLAST of Carg05129 vs. TrEMBL
Match: tr|A0A0A0KK92|A0A0A0KK92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MSFRRKNNKQEAAQHTNSDRQHNQKLPCFIGRSRIETLHNILVKQSNSDKHQQRTKGMKK 60
          M+  RK+NKQ   +H N +RQ  Q L   I   R++T+H+IL+KQSNS ++Q R + M++
Sbjct: 1  MASGRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQE 60

Query: 61 INKPLLL------GQCGGGINDPQALKRGHPISD 89
          INKP  +       +  G ++DPQA + G  I +
Sbjct: 61 INKPQPITSRDGRRKFHGAVDDPQASESGESIGN 94

The following BLAST results are available for this feature:

BLAST of Carg05129 vs. NCBI nr


Match Name	E-value	Identity	Description
PON97835.1	1.2e-21	43.05	hypothetical protein TorRG33x02_064250 [Trema orientalis]	[more]
PON44448.1	2.1e-18	40.40	hypothetical protein PanWU01x14_266830 [Parasponia andersonii]	[more]
PON60637.1	7.0e-14	39.01	hypothetical protein TorRG33x02_284420 [Trema orientalis]	[more]
KGN49259.1	2.8e-07	39.36	hypothetical protein Csa_6G518140 [Cucumis sativus]	[more]

BLAST of Carg05129 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05129 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05129 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5FJ60\|A0A2P5FJ60_9ROSA	7.8e-22	43.05	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_064250 PE=4 S...	[more]
tr\|A0A2P5B6P1\|A0A2P5B6P1_PARAD	1.4e-18	40.40	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE...	[more]
tr\|A0A2P5CHX1\|A0A2P5CHX1_9ROSA	4.6e-14	39.01	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_284420 PE=4 S...	[more]
tr\|A0A0A0KK92\|A0A0A0KK92_CUCSA	1.9e-07	39.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05129-RA	Carg05129-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05129	ClCG01G023280	Watermelon (Charleston Gray)	carwcgB0779
Carg05129	CmaCh20G005740	Cucurbita maxima (Rimu)	carcmaB1123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05129	Wax gourd	carwgoB0942
Carg05129	Wax gourd	carwgoB0946
Carg05129	Silver-seed gourd	carcarB363
Carg05129	Cucumber (Gy14) v2	carcgybB0794
Carg05129	Cucumber (Gy14) v1	carcgyB0917
Carg05129	Cucurbita maxima (Rimu)	carcmaB1124
Carg05129	Cucurbita moschata (Rifu)	carcmoB1092
Carg05129	Cucurbita moschata (Rifu)	carcmoB1094
Carg05129	Cucurbita pepo (Zucchini)	carcpeB1133
Carg05129	Cucurbita pepo (Zucchini)	carcpeB1139
Carg05129	Wild cucumber (PI 183967)	carcpiB0840
Carg05129	Cucumber (Chinese Long) v2	carcuB0820
Carg05129	Cucumber (Chinese Long) v3	carcucB0844
Carg05129	Bottle gourd (USVL1VR-Ls)	carlsiB739
Carg05129	Melon (DHL92) v3.5.1	carmeB0799
Carg05129	Melon (DHL92) v3.6.1	carmedB0811
Carg05129	Watermelon (97103) v1	carwmB0811
Carg05129	Watermelon (97103) v2	carwmbB0845