Carg05114-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTGAATTCTCCAAGTTTTAACGTAAAATCCGATTTCCTTTTCCAAAACGAAGAACAATTTCTTGAATTCCACAAGCGAGAGCGTCCGCAATCCCTAATTTTGTAACTTCAAGAACAGTTGAACATGATTTGTTGCTCTTACTTCACAACCAGTTCTCGCCGTCTAAAACTCATTTCGACGGCCTCACAGTTCGTCGGCAAGATTCTACGCCGTCGCATCCCTTGATCGTTTCAATCAGTGAAGGGGAAGAGATTTCAGTCATACTCTCAAGTTTCTGTTCATTTCATCTTCGATTTGGATGCAAAGCGCTCTGGACGGATTCGGGATTTCGATTCAGTGAGTTCTCATAATCTGTTTCTAGGTTTCCGTTTCGTCTTTTCTTTGTTTTGATTTACATTCTCTGGTTCTTCGCTGCTTGTTCTGAATATTTTGTTGTTCTTTGTTCCAAGTTCATGCCCTAAATTTGCTGCTAATGAATTTTCCCTGGAAGATTCTTGAGCTTGTGCTACATTTTCATTCTTTTCCATAGTTGATTGATAGTTTTACTGCTATTTGGTTAGAAACTGGGCTGCCACTTTCTATGTTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATGTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAGTTTTATGTTGAATATGCGACACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGAAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACGATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATCGTTTCAAGAATTGTGAAGGATCACAATCATCCCTTAGTTGTTTGTTCTAATGGTTTCAGCTGCTCGGTGAGTTATTCTGATTCTAGTTTATTTTGTTTGTCCTTTTTTTATGACTATAACTAGAATGAGGCATGGTAACTATAACCGCTCAAGCCCACCGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTTCGGGTTTCCCTTCACGTATGCTTGGGAGAGGTTTCTACACCCTTGTAAGGAATGCTTTGTTCTCCTCCCCAACCAATGTGGATCCCACAATCCACCCCATTCGGGGCCCAGCATCCTTGCTGGCACATTGCTCGGTGTCTGGCTATGATACCATTTGTAACAGCCCAAGCCCACCGTTAGCGATATTGTCATCTCCAATCATTGTATAGTTAGGTAATTCGGGTTCCTAAAGGATTTTGGCTCTAAGTTGTAGGATGAGTTTTCTCCGCCATTCAACTATGCTTCGTAGTTGAAAAGAGTCTATGCTGACTTAGATGCTGTGATACCATGATACCATGCATTAAGTTCCAGGGCCCAGTATCCTTGCTAGTACATTGCCCGGTGTCTGACTATGATACCATTTGTAACAGTCCAAGCCCACCGTTAGCGATATTGTCCTCTCCAATCATTGTATAGTTAGGAAATCCGGGTTCCTATTAAAAGGATTTTGGCTCTAAGTTGTAGGATGAGTTTTCTTTGCCGTTCAACTATGCTTCGTGTTGAAAAAGGGTTTATATTGACTTAGATGCTGTGATACCATGCATTAAGTTCCTTTATTTCTTTGTTTGAATCTATATAAAACTTCTCTTGGTTCTGAAAAACTGTGTAACTTTTGCCTAAATCAATGAAAAATGTATGATTTCTTGGAAAGCATTTAGGAGAAACCTCTCTATTTAATGGAAGAGAATGGAGAGGAGTGATAGACTGCCTTATTAAGGTGTACATAGGGAGATGGTTAGGGTCAGTCGAGTAAAGTCGTTAGCAGGTTGGACCCTATGATAGTAACTGAACTTGGCATGGAACGCTGGTAGTGGCTAGAGCTATTTAGTGTAGGGTGTTACGCTGGTAGTGGCTGATAACATTGAACACGGTAGAAGGTGGAGCAAATAGTGTAGGGTGTTACATAGTTAATGGATTAACACTTGTTTTCTATTTGCATTTGAGAAAATTTGGTATTGATTTTCATTGAAGCCAGTCCAAATGGATAGTTGCATTGCGTGGAGAGATAGTGGTGAAAGGAGAGAATTTGAAAGTTGTGATGCCTTGAGTGGAGATATTTTTGTAACAGCCCAAACCCGCTGCTAGGAGATATTGTTCTCTTTAGACTTTCCCTTTTGAACTTAGTAGAGAGAGCTTTTCACACCCTTATAAGAAATGCTTCATTTCCCTCTCCAATCGATGTGGGATCTCACAATTCACCTCTCTCGGAGGCCCAGTGTCCTCGTTGGCACCAAGCTCACCGCTAACAAATATTGTCTGCTTTGGCCTGTTATGTATCGCCCTCAGCCTCACGGTTTTAAAATGCATCTACTAAAGAGAGGTTTCCACACTCTTATAAGAAATGCTTCGTTCTCCTCTCCAACCCACATGAGATCTCACACATTTGGAGGCTTGAGTGTCCTAAGTGTGTATTGGCTATTGATCTTTGGGGTGCGTCAAAGTTGATTGGACGTAGCTAATTAAATTTGGGTAGGAGATTGGAGGATCTAAGTCTACTCTAATCTCAGGTATCACTCAAGAACGGTACAAAATATAGCTGAAGCTTATGATATTGGGAACTAAATCCCGTCATGGACTTTCAGATAGAAAAATGTAACCTAGATATTATTAGATTAGATTAGATTTGTTCTCTGTTCCATTTGAGGCTCACTGTCTGTATTCTGTAACATGTAGCCAATTGAATACATTGTTCGAGGATTATTGAGGGTGACTCCCACATTAGTTAATTTAGTAGAAGATCATAGGTTTATAAGTAAGGAATACATTTCCGTTGGTACGAGGCCTTTTGGGGAAGCCCAAACCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCGTTGTGGAGAGTCGTGATTCCTAACATATATTTCCTTTACTTTTTAAACTTTGATGTTCTGGGTTTATTCAAATCTACGACGTATAAAGTGAATCGACATTGATACTTGTAGGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACAGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGGTATGCAAAAACATTATCCATTTCGACAATAGTAAATAAAACTTGAATATGCACAGAGTTGAAAATTTGAGTCTCAATGATGTTCTTGATTTAGTAATGTATAGCAGCCATTGATGCATTGATCTGAAGATGAGAGTATTGAAAGC TTTGAATTCTCCAAGTTTTAACGTAAAATCCGATTTCCTTTTCCAAAACGAAGAACAATTTCTTGAATTCCACAAGCGAGAGCGTCCGCAATCCCTAATTTTGTAACTTCAAGAACAGTTGAACATGATTTGTTGCTCTTACTTCACAACCAGTTCTCGCCGTCTAAAACTCATTTCGACGGCCTCACAGTTCGTCGGCAAGATTCTACGCCGTCGCATCCCTTGATCGTTTCAATCAGTGAAGGGGAAGAGATTTCAGTCATACTCTCAAGTTTCTGTTCATTTCATCTTCGATTTGGATGCAAAGCGCTCTGGACGGATTCGGGATTTCGATTCAAAACTGGGCTGCCACTTTCTATGTTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATGTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAGTTTTATGTTGAATATGCGACACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGAAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACGATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATCGTTTCAAGAATTGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACAGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGGTATGCAAAAACATTATCCATTTCGACAATAGTAAATAAAACTTGAATATGCACAGAGTTGAAAATTTGAGTCTCAATGATGTTCTTGATTTAGTAATGTATAGCAGCCATTGATGCATTGATCTGAAGATGAGAGTATTGAAAGC ATGCAAAGCGCTCTGGACGGATTCGGGATTTCGATTCAAAACTGGGCTGCCACTTTCTATGTTGGTTATGTTAATGAATGTGTTGCAGTGAATTTAGACGACGAAACAGGGCGAGCACACGACTCTATTGAGATTAACGGAGATGCAGCTGAAGGAAATTTGATGTTGGAGCCATATGTTGGTATGGAGTTTGATTCTGAAGATGCTGCAAGAAAGTTTTATGTTGAATATGCGACACAGATGGGGTTTGTCGTGCGAATTATGCAGCGACGTTGTTCGGAAATTGATGGAAGAACGTTAGCCCGGAGGCTTGGATGTAATAAACAAGGTTTCTCTCCGAATCGAAGAGGGATTTATGGATCAGATAAGAAACCACGGCCTAGTTCACGAGAGGGCTGCAAGGCAACGATTTTGGTGAAAATGGAGAAGTCTGGAAAATGGATCGTTTCAAGAATTGGTGATAAAGATAAGAAGATCGAGGAACTTAAAATGGAGTTGGAGCATCAAGAGCAACAATGCGTAGCATACCGGGAAAAGCTTTTCGATTTCATCTCAACGGTGGAGGAACAAACAGAAGAATTGTCTTCAAAAATACAAATGATCATCGGCAATGTAAGGCAAGTTGAATCTGGTATGCAAAAACATTATCCATTTCGACAATAG MQSALDGFGISIQNWAATFYVGYVNECVAVNLDDETGRAHDSIEINGDAAEGNLMLEPYVGMEFDSEDAARKFYVEYATQMGFVVRIMQRRCSEIDGRTLARRLGCNKQGFSPNRRGIYGSDKKPRPSSREGCKATILVKMEKSGKWIVSRIGDKDKKIEELKMELEHQEQQCVAYREKLFDFISTVEEQTEELSSKIQMIIGNVRQVESGMQKHYPFRQ
BLAST of Carg05114-RA vs. NCBI nr
Match: XP_022960344.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita moschata]) HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96 Identity = 187/209 (89.47%), Postives = 189/209 (90.43%), Query Frame = 0
BLAST of Carg05114-RA vs. NCBI nr
Match: XP_023004747.1 (uncharacterized protein LOC111497957 isoform X1 [Cucurbita maxima]) HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95 Identity = 185/209 (88.52%), Postives = 188/209 (89.95%), Query Frame = 0
BLAST of Carg05114-RA vs. NCBI nr
Match: XP_023514649.1 (protein FAR1-RELATED SEQUENCE 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 358.2 bits (918), Expect = 2.0e-95 Identity = 184/209 (88.04%), Postives = 189/209 (90.43%), Query Frame = 0
BLAST of Carg05114-RA vs. NCBI nr
Match: XP_023004748.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93 Identity = 182/206 (88.35%), Postives = 185/206 (89.81%), Query Frame = 0
BLAST of Carg05114-RA vs. NCBI nr
Match: XP_022143586.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Momordica charantia]) HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82 Identity = 163/209 (77.99%), Postives = 176/209 (84.21%), Query Frame = 0
BLAST of Carg05114-RA vs. TAIR10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 168.7 bits (426), Expect = 4.0e-42 Identity = 94/182 (51.65%), Postives = 122/182 (67.03%), Query Frame = 0
BLAST of Carg05114-RA vs. TAIR10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 151.0 bits (380), Expect = 8.7e-37 Identity = 74/173 (42.77%), Postives = 117/173 (67.63%), Query Frame = 0
BLAST of Carg05114-RA vs. TAIR10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 124.4 bits (311), Expect = 8.7e-29 Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 0
BLAST of Carg05114-RA vs. TAIR10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 108.2 bits (269), Expect = 6.4e-24 Identity = 71/205 (34.63%), Postives = 106/205 (51.71%), Query Frame = 0
BLAST of Carg05114-RA vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5) HSP 1 Score: 87.8 bits (216), Expect = 9.0e-18 Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 0
HSP 2 Score: 37.0 bits (84), Expect = 1.8e-02 Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of Carg05114-RA vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16 Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 0
BLAST of Carg05114-RA vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.7e-13 Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 0
BLAST of Carg05114-RA vs. Swiss-Prot
Match: sp|Q9M8J3|FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.6e-11 Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg05114-RA vs. Swiss-Prot
Match: sp|Q9SWG3|FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 0
BLAST of Carg05114-RA vs. Swiss-Prot
Match: sp|Q3EBQ3|FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.8e-07 Identity = 31/104 (29.81%), Postives = 57/104 (54.81%), Query Frame = 0
BLAST of Carg05114-RA vs. TrEMBL
Match: tr|A0A0A0K5G0|A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375750 PE=3 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 6.3e-82 Identity = 162/209 (77.51%), Postives = 175/209 (83.73%), Query Frame = 0
BLAST of Carg05114-RA vs. TrEMBL
Match: tr|A0A1S3BS39|A0A1S3BS39_CUCME (protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103492594 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 5.3e-81 Identity = 159/209 (76.08%), Postives = 175/209 (83.73%), Query Frame = 0
BLAST of Carg05114-RA vs. TrEMBL
Match: tr|A0A2N9HYE4|A0A2N9HYE4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45274 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 3.7e-66 Identity = 135/206 (65.53%), Postives = 159/206 (77.18%), Query Frame = 0
BLAST of Carg05114-RA vs. TrEMBL
Match: tr|A0A061DUS5|A0A061DUS5_THECC (Far-red impaired responsive family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_002653 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.0e-64 Identity = 137/203 (67.49%), Postives = 154/203 (75.86%), Query Frame = 0
BLAST of Carg05114-RA vs. TrEMBL
Match: tr|A0A061DMU8|A0A061DMU8_THECC (Far-red impaired responsive family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_002653 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 2.6e-64 Identity = 139/218 (63.76%), Postives = 162/218 (74.31%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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