Carg05088-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTATATATATTCATAATTGAAGAATTGTTGTAATGACGACCCCACCCTTCTCTCTCACTCTTCGCCAATAATTGAAATCCACCATTCTTCTTCTTCTTCCTCTGCTCTCACTTTCAATCTCCATTGTTAATCTACTGCAGCTTTCTCCGAATTTTTCCACTACGCGTCTTAGATTTTTCCTTTTCCTGCATCGCCATGCTCTTCCTCTTGTTCTTTTTCCTCTACTTCACCCCTTCAATGGCGGCGGAGCCTCGTGTGGTCATCACCTCTGATTCGAAGTCCATTTACGATGTTCTTTCAGCTCATGGCCTCCCCAAGGGTCTACTTCCCAAAGGTATTAGGGATTACGAATTCCATGAGGAGAGTGGGCGGTTCGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAGCTGCATTACGAGACCAATGTTACGGGCACTTTGAGTTATGGTCAGATCGGTGCCTTGTCGGGGATTTCGGCTCAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGCATTCGCGTCGACATTCCGAGCTCTGGTGTTATTTATTTTGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTTCGGCTTCCAAGGTCTTGATCTACTTCTTCATTTTCTCCTTTCTCTCTTTCATTACTGTATCATATATTGTATGGTTGTTTGGTTTCAATTCGATTCAATTTATTAGAGCTTTGGAATTTGATTCATATGCAGAATCAACACAGGAAAATTGGGAACCGATTTGTTGAGTCAGGTTCAGTGAAAGTGGCTTGAAATTGCCATTGAAACAAAAGGAAAAAAAGGCTCAAAGGAGGGAGGAATCCTGCTATTCATTGTATATGTCATCAAAGCATATATATTATGGTTCTTTACACATATCATTCAGAGCAGAGTCAGAGTCTGAGAATTTCTGGTTTGTGTGAGGAATTGGAAAGGAAGGAAGAAGGGGAAGAAGAAGCACATTTGGTTCGTAGAAATTTTTGTTTGGGGGGAGATTGCAGCAAGGTAGGTGGAGTTCAGGTGAAAAATTTACACATTTCTATTCAATAATCTTCAGAAATTTTGGTGTATTGTTGTGAATATTATCATTATCTTTATCATTATTGTTATTATTACAGTGGCTGTAATGATTTTGTTTCTTTTTTTTGTCTGGAATGCAAATTCTCTGCAATAAACATGTCAAGAATAGAGTGTTTTCTTGGTTTTATACCGATTTCTTGTTTGCCAATGAGTTCTATAATCGCATATCAGTGTTGCAATGGGAATTGTCATTCTTGTCAGCATTAGTAAAACATTTTCTATGATAGATGTCTGAAACTTGATATAAGCAGTAGTTTTTGTGCTCATTTTCTAGCTTTTACTTCCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCATGCAAAGTGATACTCAATGGCTTGCTTGACTATGAAAATGGGTAACAAAGTGATATACTCAATCGCTTGTTTGACTATGAAAATGGGTAACTTAGTGATACTCTGATGGCTTGCTTGGCTATGAAAATGGTATTTTACCGTAGTGTTTGAATGCTGTTGAGCCTTTTTCTTTGGTGATAGACCTACCCTGATAGAGGACTAGATCAATTAGAGCGGTTGTAATAGCCTAAATCCACTTTCAGTAGATACTATCATATTTGGAGTTTCCCTCTCGGACTTTCTTTCAAGATTTTTAAAACGTGTCTAGGGAGAGATTTCCACAATCTTATGAAAAATGCTTCATTTCCCTTTTCAACTGACGTGGGATCTCACAATCCTCCCACTTCAGGGTTCGGTGTCTTCACTGGCCCTCGTTCCCCTCTAAACCACATGTTT GTATATATATTCATAATTGAAGAATTGTTGTAATGACGACCCCACCCTTCTCTCTCACTCTTCGCCAATAATTGAAATCCACCATTCTTCTTCTTCTTCCTCTGCTCTCACTTTCAATCTCCATTGTTAATCTACTGCAGCTTTCTCCGAATTTTTCCACTACGCGTCTTAGATTTTTCCTTTTCCTGCATCGCCATGCTCTTCCTCTTGTTCTTTTTCCTCTACTTCACCCCTTCAATGGCGGCGGAGCCTCGTGTGGTCATCACCTCTGATTCGAAGTCCATTTACGATGTTCTTTCAGCTCATGGCCTCCCCAAGGGTCTACTTCCCAAAGGTATTAGGGATTACGAATTCCATGAGGAGAGTGGGCGGTTCGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAGCTGCATTACGAGACCAATGTTACGGGCACTTTGAGTTATGGTCAGATCGGTGCCTTGTCGGGGATTTCGGCTCAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGCATTCGCGTCGACATTCCGAGCTCTGGTGTTATTTATTTTGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTTCGGCTTCCAAGAATCAACACAGGAAAATTGGGAACCGATTTGTTGAGTCAGGTTCAGTGAAAGTGGCTTGAAATTGCCATTGAAACAAAAGGAAAAAAAGGCTCAAAGGAGGGAGGAATCCTGCTATTCATTGTATATGTCATCAAAGCATATATATTATGGTTCTTTACACATATCATTCAGAGCAGAGTCAGAGTCTGAGAATTTCTGGTTTGTGTGAGGAATTGGAAAGGAAGGAAGAAGGGGAAGAAGAAGCACATTTGGTTCGTAGAAATTTTTGTTTGGGGGGAGATTGCAGCAAGGTAGGTGGAGTTCAGGTGAAAAATTTACACATTTCTATTCAATAATCTTCAGAAATTTTGGTGTATTGTTGTGAATATTATCATTATCTTTATCATTATTGTTATTATTACAGTGGCTGTAATGATTTTGTTTCTTTTTTTTGTCTGGAATGCAAATTCTCTGCAATAAACATGTCAAGAATAGAGTGTTTTCTTGGTTTTATACCGATTTCTTGTTTGCCAATGAGTTCTATAATCGCATATCAGTGTTGCAATGGGAATTGTCATTCTTGTCAGCATTAGTAAAACATTTTCTATGATAGATGTCTGAAACTTGATATAAGCAGTAGTTTTTGTGCTCATTTTCTAGCTTTTACTTCCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCATGCAAAGTGATACTCAATGGCTTGCTTGACTATGAAAATGGGTAACAAAGTGATATACTCAATCGCTTGTTTGACTATGAAAATGGGTAACTTAGTGATACTCTGATGGCTTGCTTGGCTATGAAAATGGTATTTTACCGTAGTGTTTGAATGCTGTTGAGCCTTTTTCTTTGGTGATAGACCTACCCTGATAGAGGACTAGATCAATTAGAGCGGTTGTAATAGCCTAAATCCACTTTCAGTAGATACTATCATATTTGGAGTTTCCCTCTCGGACTTTCTTTCAAGATTTTTAAAACGTGTCTAGGGAGAGATTTCCACAATCTTATGAAAAATGCTTCATTTCCCTTTTCAACTGACGTGGGATCTCACAATCCTCCCACTTCAGGGTTCGGTGTCTTCACTGGCCCTCGTTCCCCTCTAAACCACATGTTT ATGCTCTTCCTCTTGTTCTTTTTCCTCTACTTCACCCCTTCAATGGCGGCGGAGCCTCGTGTGGTCATCACCTCTGATTCGAAGTCCATTTACGATGTTCTTTCAGCTCATGGCCTCCCCAAGGGTCTACTTCCCAAAGGTATTAGGGATTACGAATTCCATGAGGAGAGTGGGCGGTTCGTGGTGTTCTTGGATCGGGAGTGTAATGCGATGTTCGAGAATCAGCTGCATTACGAGACCAATGTTACGGGCACTTTGAGTTATGGTCAGATCGGTGCCTTGTCGGGGATTTCGGCTCAGGATCTCTTCTTGTGGTTTCCTGTTAAGGGCATTCGCGTCGACATTCCGAGCTCTGGTGTTATTTATTTTGACGTTGGTGTTGTTTTCAAGCAATTCTCTCAGTCCCTCTTCGAAACCCCTCCCGAATGCGTTTCGGCTTCCAAGAATCAACACAGGAAAATTGGGAACCGATTTGTTGAGTCAGGTTCAGTGAAAGTGGCTTGA MLFLLFFFLYFTPSMAAEPRVVITSDSKSIYDVLSAHGLPKGLLPKGIRDYEFHEESGRFVVFLDRECNAMFENQLHYETNVTGTLSYGQIGALSGISAQDLFLWFPVKGIRVDIPSSGVIYFDVGVVFKQFSQSLFETPPECVSASKNQHRKIGNRFVESGSVKVA
BLAST of Carg05088-RA vs. NCBI nr
Match: XP_022959707.1 (uncharacterized protein At5g01610-like [Cucurbita moschata]) HSP 1 Score: 338.2 bits (866), Expect = 1.6e-89 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
BLAST of Carg05088-RA vs. NCBI nr
Match: XP_023004236.1 (uncharacterized protein At5g01610-like [Cucurbita maxima]) HSP 1 Score: 334.0 bits (855), Expect = 3.0e-88 Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = 0
BLAST of Carg05088-RA vs. NCBI nr
Match: XP_023550146.1 (uncharacterized protein At5g01610-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 333.6 bits (854), Expect = 3.9e-88 Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0
BLAST of Carg05088-RA vs. NCBI nr
Match: XP_022991665.1 (uncharacterized protein At5g01610-like [Cucurbita maxima]) HSP 1 Score: 273.9 bits (699), Expect = 3.7e-70 Identity = 135/167 (80.84%), Postives = 148/167 (88.62%), Query Frame = 0
BLAST of Carg05088-RA vs. NCBI nr
Match: XP_022954139.1 (uncharacterized protein At5g01610-like [Cucurbita moschata]) HSP 1 Score: 270.8 bits (691), Expect = 3.1e-69 Identity = 133/166 (80.12%), Postives = 147/166 (88.55%), Query Frame = 0
BLAST of Carg05088-RA vs. TAIR10
Match: AT3G07470.1 (Protein of unknown function, DUF538) HSP 1 Score: 171.8 bits (434), Expect = 3.6e-43 Identity = 74/120 (61.67%), Postives = 100/120 (83.33%), Query Frame = 0
BLAST of Carg05088-RA vs. TAIR10
Match: AT3G07460.2 (Protein of unknown function, DUF538) HSP 1 Score: 155.6 bits (392), Expect = 2.7e-38 Identity = 69/123 (56.10%), Postives = 98/123 (79.67%), Query Frame = 0
BLAST of Carg05088-RA vs. TAIR10
Match: AT5G16380.1 (Protein of unknown function, DUF538) HSP 1 Score: 136.0 bits (341), Expect = 2.2e-32 Identity = 70/150 (46.67%), Postives = 99/150 (66.00%), Query Frame = 0
BLAST of Carg05088-RA vs. TAIR10
Match: AT5G54530.1 (Protein of unknown function, DUF538) HSP 1 Score: 124.8 bits (312), Expect = 5.0e-29 Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 0
BLAST of Carg05088-RA vs. TAIR10
Match: AT1G61667.1 (Protein of unknown function, DUF538) HSP 1 Score: 118.6 bits (296), Expect = 3.6e-27 Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = 0
BLAST of Carg05088-RA vs. TrEMBL
Match: tr|A0A1S3BGD3|A0A1S3BGD3_CUCME (uncharacterized protein At5g01610-like OS=Cucumis melo OX=3656 GN=LOC103489718 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 3.4e-64 Identity = 127/158 (80.38%), Postives = 139/158 (87.97%), Query Frame = 0
BLAST of Carg05088-RA vs. TrEMBL
Match: tr|A0A0A0K6Z0|A0A0A0K6Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372350 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 3.8e-63 Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 0
BLAST of Carg05088-RA vs. TrEMBL
Match: tr|A0A2P6PTU1|A0A2P6PTU1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0282751 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48 Identity = 95/137 (69.34%), Postives = 115/137 (83.94%), Query Frame = 0
BLAST of Carg05088-RA vs. TrEMBL
Match: tr|A0A2P5DPB3|A0A2P5DPB3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_044700 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 7.7e-48 Identity = 91/118 (77.12%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of Carg05088-RA vs. TrEMBL
Match: tr|A0A2P5CY89|A0A2P5CY89_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_269540 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 5.0e-47 Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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