Carg04300-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04300-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dof zinc finger protein like
Location	Cucurbita_argyrosperma_scaffold_044 : 1276200 .. 1276838 (-)
Sequence length	639

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGACCCATCAACTTTTCCGATGATTAAACCCCAATTTCCCGAACAAGAGCAGCTTAAATGCCCTCGATGTGATTCTACAAACACCAAATTTTGCTATTACAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGAATTGCCGTCGGTACTGGACCAAAGGCGGCGCTCTGCGGAATATCCCTGTCGGCGGAGGAAGCCGGAAAAACGCCAAGCGACCGGCGGTGTCGGCCACCGTCAAGCGTCCGCCGTCCTCCTCATCTTCGTCTTCTTCGGGATCGATGCTGAACCCGATTACGGGTCCGGATCATAACCCCATCCGTGGCTATGGCGGCGGGTTGGAAATTCCGGGGAGCTTCAGCTCGCTGCTGGCGTCAAATGGGCAATATGGGAATCTCCTGGAGAGTATGGATCCGAATCAACCGGAGATGAAAATGATGGAATTGGGAGGATTTTCGGAGAATTTGAATTCTGGGTCTGGCCGGAAATCTGCAGCGGAGGAACAGAGCGGCTGCGTGCCGGAGAATTATTTGGGTGTGTTGCAGAACGGCGATTCCAGTTGTTGGACCGGCGGTGGCAGCAATGGATGGCCTGATCTTGCCATTTTCACACCAGGTTCAAGTTACCAGTAA

mRNA sequence

ATGCAAGACCCATCAACTTTTCCGATGATTAAACCCCAATTTCCCGAACAAGAGCAGCTTAAATGCCCTCGATGTGATTCTACAAACACCAAATTTTGCTATTACAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGAATTGCCGTCGGTACTGGACCAAAGGCGGCGCTCTGCGGAATATCCCTGTCGGCGGAGGAAGCCGGAAAAACGCCAAGCGACCGGCGGTGTCGGCCACCGTCAAGCGTCCGCCGTCCTCCTCATCTTCGTCTTCTTCGGGATCGATGCTGAACCCGATTACGGGTCCGGATCATAACCCCATCCGTGGCTATGGCGGCGGGTTGGAAATTCCGGGGAGCTTCAGCTCGCTGCTGGCGTCAAATGGGCAATATGGGAATCTCCTGGAGAGTATGGATCCGAATCAACCGGAGATGAAAATGATGGAATTGGGAGGATTTTCGGAGAATTTGAATTCTGGGTCTGGCCGGAAATCTGCAGCGGAGGAACAGAGCGGCTGCGTGCCGGAGAATTATTTGGGTGTGTTGCAGAACGGCGATTCCAGTTGTTGGACCGGCGGTGGCAGCAATGGATGGCCTGATCTTGCCATTTTCACACCAGGTTCAAGTTACCAGTAA

Coding sequence (CDS)

ATGCAAGACCCATCAACTTTTCCGATGATTAAACCCCAATTTCCCGAACAAGAGCAGCTTAAATGCCCTCGATGTGATTCTACAAACACCAAATTTTGCTATTACAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGAATTGCCGTCGGTACTGGACCAAAGGCGGCGCTCTGCGGAATATCCCTGTCGGCGGAGGAAGCCGGAAAAACGCCAAGCGACCGGCGGTGTCGGCCACCGTCAAGCGTCCGCCGTCCTCCTCATCTTCGTCTTCTTCGGGATCGATGCTGAACCCGATTACGGGTCCGGATCATAACCCCATCCGTGGCTATGGCGGCGGGTTGGAAATTCCGGGGAGCTTCAGCTCGCTGCTGGCGTCAAATGGGCAATATGGGAATCTCCTGGAGAGTATGGATCCGAATCAACCGGAGATGAAAATGATGGAATTGGGAGGATTTTCGGAGAATTTGAATTCTGGGTCTGGCCGGAAATCTGCAGCGGAGGAACAGAGCGGCTGCGTGCCGGAGAATTATTTGGGTGTGTTGCAGAACGGCGATTCCAGTTGTTGGACCGGCGGTGGCAGCAATGGATGGCCTGATCTTGCCATTTTCACACCAGGTTCAAGTTACCAGTAA

Protein sequence

MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRPAVSATVKRPPSSSSSSSSGSMLNPITGPDHNPIRGYGGGLEIPGSFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYLGVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ

Homology

[Close]

BLAST of Carg04300-RA vs. NCBI nr
Match: XP_022948818.1 (dof zinc finger protein DOF1.7-like [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTFPMIKPQ+PEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFPMIKPQYPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG
Sbjct: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL
Sbjct: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 212

[Close]

BLAST of Carg04300-RA vs. NCBI nr
Match: XP_023523362.1 (dof zinc finger protein DOF1.7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.4 bits (1038), Expect = 2.3e-109
Identity = 210/212 (99.06%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPI GPDHNPIRGYGGGLEIPG
Sbjct: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPIAGPDHNPIRGYGGGLEIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFS NLNSGSGRKSAAEEQSGCVPENYL
Sbjct: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSGNLNSGSGRKSAAEEQSGCVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 212

[Close]

BLAST of Carg04300-RA vs. NCBI nr
Match: XP_022997902.1 (dof zinc finger protein DOF1.7-like [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 5.7e-100
Identity = 196/212 (92.45%), Postives = 197/212 (92.92%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGG            XXXXXXXXXXXXXXXXXM NPITGPDHNPIRGYGGGLEIPG
Sbjct: 61  RNIPVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRNPITGPDHNPIRGYGGGLEIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQYGNLLE MDPNQPEMKMMELGGFSENL SGSGRKSAAEEQSGCVPENYL
Sbjct: 121 SFSSLLASNGQYGNLLEGMDPNQPEMKMMELGGFSENLISGSGRKSAAEEQSGCVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           G+LQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GMLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 212

[Close]

BLAST of Carg04300-RA vs. NCBI nr
Match: KGN59833.1 (hypothetical protein Csa_3G849890 [Cucumis sativus])

HSP 1 Score: 337.8 bits (865), Expect = 2.7e-89
Identity = 166/212 (78.30%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTF  IKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGGG+RKN+KR   +                   N IT PDHNPIRGYGGGL+IPG
Sbjct: 61  RNIPVGGGTRKNSKRAVAATVKRPPSSTSSTHP-----NTITVPDHNPIRGYGGGLDIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQ+GNLLE +DPNQ E+KM+ELG F     SGSGRKSAAEEQS  VPENYL
Sbjct: 121 SFSSLLASNGQFGNLLEGVDPNQSEVKMVELGEF-----SGSGRKSAAEEQSAGVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDS+CW GGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSNCWNGGGSNGWPDLAIFTPGSSYQ 202

[Close]

BLAST of Carg04300-RA vs. NCBI nr
Match: XP_008447593.1 (PREDICTED: dof zinc finger protein DOF1.7-like [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 171/212 (80.66%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTF  IKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGG            XXXXXXXXXXX        NPI  PDHNPIRGYGGGL+IPG
Sbjct: 61  RNIPVGGXXXXXXXXXXXXXXXXXXXXXXXTHP-----NPIAVPDHNPIRGYGGGLDIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQ+GNLLE +DPNQ E+KM+ELG F     SGSGRKSAAEEQS  VPENYL
Sbjct: 121 SFSSLLASNGQFGNLLEGVDPNQSEVKMVELGEF-----SGSGRKSAAEEQSATVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDS+CW+GGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSNCWSGGGSNGWPDLAIFTPGSSYQ 202

[Close]

BLAST of Carg04300-RA vs. TAIR10
Match: AT1G51700.1 (DOF zinc finger protein 1)

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-34
Identity = 77/135 (57.04%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 11  KPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSR 70
           +P+ PEQEQLKCPRCDS NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG+R
Sbjct: 24  QPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTR 83

Query: 71  KNAKRPAVS------XXXXXXXXXXXXXXXXXMLNPITGPDHNPIR---GYGGGLEIPGS 130
           K+ KR   S                           ++G + NP R   G   G     S
Sbjct: 84  KSNKRSGSSPSSNLKNQTVAEKPDHHGSGSEEKEERVSGQEMNPTRMLYGLPVGDPNGAS 143

Query: 131 FSSLLASNGQYGNLL 137
           FSSLLASN Q G L+
Sbjct: 144 FSSLLASNMQMGGLV 158

[Close]

BLAST of Carg04300-RA vs. TAIR10
Match: AT3G21270.1 (DOF zinc finger protein 2)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 97/158 (61.39%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 1   MQDPSTF---------PMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCR 60
           MQDP+ +              QF EQEQLKCPRCDS NTKFCYYNNYNLSQPRHFCK+CR
Sbjct: 1   MQDPAAYXXXXXXXXXXXXXXQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTKGGALRNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITG-------P 120
           RYWTKGGALRN+PVGGGSRKNA +    XXXXXXXXXXXXXXXXX              P
Sbjct: 61  RYWTKGGALRNVPVGGGSRKNATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSQKP 120

Query: 121 DHNPIRGYGG---------GLEIPGSFSSLLASNGQYG 134
           D +P R   G         G+EI GSFSSLLA+N Q G
Sbjct: 121 DLDPTRMLYGFPIGDQDVKGMEIGGSFSSLLANNMQLG 158

[Close]

BLAST of Carg04300-RA vs. TAIR10
Match: AT3G50410.1 (OBF binding protein 1)

HSP 1 Score: 117.9 bits (294), Expect = 7.8e-27
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 12 PQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRK 71
          P   +QEQL CPRCDS+NTKFCYYNNYN SQPRHFCK CRRYWT GG LR++PVGGG+RK
Sbjct: 22 PISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRK 81

Query: 72 NAKR 76
          +AKR
Sbjct: 82 SAKR 85

[Close]

BLAST of Carg04300-RA vs. TAIR10
Match: AT5G66940.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-26
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 16 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKR 75
          +QEQL CPRC+STNTKFCYYNNYN SQPRHFCK+CRRYWT GG LR+IPVGG SRK++KR
Sbjct: 28 QQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKR 87

[Close]

BLAST of Carg04300-RA vs. TAIR10
Match: AT5G60850.1 (OBF binding protein 4)

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-26
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 18  EQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKR 76
           + LKCPRC+S NTKFCYYNNYNLSQPRHFCKNCRRYWTKGG LRN+PVGGG RK AKR
Sbjct: 49  QSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRK-AKR 105

[Close]

BLAST of Carg04300-RA vs. Swiss-Prot
Match: sp|O82155|DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.1e-33
Identity = 77/135 (57.04%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 11  KPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSR 70
           +P+ PEQEQLKCPRCDS NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG+R
Sbjct: 24  QPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTR 83

Query: 71  KNAKRPAVS------XXXXXXXXXXXXXXXXXMLNPITGPDHNPIR---GYGGGLEIPGS 130
           K+ KR   S                           ++G + NP R   G   G     S
Sbjct: 84  KSNKRSGSSPSSNLKNQTVAEKPDHHGSGSEEKEERVSGQEMNPTRMLYGLPVGDPNGAS 143

Query: 131 FSSLLASNGQYGNLL 137
           FSSLLASN Q G L+
Sbjct: 144 FSSLLASNMQMGGLV 158

[Close]

BLAST of Carg04300-RA vs. Swiss-Prot
Match: sp|Q94AR6|DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 3.5e-32
Identity = 97/158 (61.39%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 1   MQDPSTF---------PMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCR 60
           MQDP+ +              QF EQEQLKCPRCDS NTKFCYYNNYNLSQPRHFCK+CR
Sbjct: 1   MQDPAAYXXXXXXXXXXXXXXQFAEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCR 60

Query: 61  RYWTKGGALRNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITG-------P 120
           RYWTKGGALRN+PVGGGSRKNA +    XXXXXXXXXXXXXXXXX              P
Sbjct: 61  RYWTKGGALRNVPVGGGSRKNATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSQKP 120

Query: 121 DHNPIRGYGG---------GLEIPGSFSSLLASNGQYG 134
           D +P R   G         G+EI GSFSSLLA+N Q G
Sbjct: 121 DLDPTRMLYGFPIGDQDVKGMEIGGSFSSLLANNMQLG 158

[Close]

BLAST of Carg04300-RA vs. Swiss-Prot
Match: sp|Q39088|DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 12 PQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRK 71
          P   +QEQL CPRCDS+NTKFCYYNNYN SQPRHFCK CRRYWT GG LR++PVGGG+RK
Sbjct: 22 PISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRK 81

Query: 72 NAKR 76
          +AKR
Sbjct: 82 SAKR 85

[Close]

BLAST of Carg04300-RA vs. Swiss-Prot
Match: sp|Q6Z345|DOF4_ORYSJ (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-25
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 15 PEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRK 72
          P  E +KCPRC+STNTKFCYYNNYNLSQPRHFCK+CRRYWTKGG LRN+PVGGG RK
Sbjct: 40 PSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRK 96

[Close]

BLAST of Carg04300-RA vs. Swiss-Prot
Match: sp|Q9FGD6|DOF58_ARATH (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-25
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 16 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKR 75
          +QEQL CPRC+STNTKFCYYNNYN SQPRHFCK+CRRYWT GG LR+IPVGG SRK++KR
Sbjct: 28 QQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKR 87

[Close]

BLAST of Carg04300-RA vs. TrEMBL
Match: tr|A0A0A0LDG2|A0A0A0LDG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849890 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.8e-89
Identity = 166/212 (78.30%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTF  IKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGGG+RKN+KR   +                   N IT PDHNPIRGYGGGL+IPG
Sbjct: 61  RNIPVGGGTRKNSKRAVAATVKRPPSSTSSTHP-----NTITVPDHNPIRGYGGGLDIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQ+GNLLE +DPNQ E+KM+ELG F     SGSGRKSAAEEQS  VPENYL
Sbjct: 121 SFSSLLASNGQFGNLLEGVDPNQSEVKMVELGEF-----SGSGRKSAAEEQSAGVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDS+CW GGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSNCWNGGGSNGWPDLAIFTPGSSYQ 202

[Close]

BLAST of Carg04300-RA vs. TrEMBL
Match: tr|A0A1S3BHT0|A0A1S3BHT0_CUCME (dof zinc finger protein DOF1.7-like OS=Cucumis melo OX=3656 GN=LOC103490008 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 7.6e-85
Identity = 171/212 (80.66%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTF  IKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGGLEIPG 120
           RNIPVGG            XXXXXXXXXXX        NPI  PDHNPIRGYGGGL+IPG
Sbjct: 61  RNIPVGGXXXXXXXXXXXXXXXXXXXXXXXTHP-----NPIAVPDHNPIRGYGGGLDIPG 120

Query: 121 SFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCVPENYL 180
           SFSSLLASNGQ+GNLLE +DPNQ E+KM+ELG F     SGSGRKSAAEEQS  VPENYL
Sbjct: 121 SFSSLLASNGQFGNLLEGVDPNQSEVKMVELGEF-----SGSGRKSAAEEQSATVPENYL 180

Query: 181 GVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           GVLQNGDS+CW+GGGSNGWPDLAIFTPGSSYQ
Sbjct: 181 GVLQNGDSNCWSGGGSNGWPDLAIFTPGSSYQ 202

[Close]

BLAST of Carg04300-RA vs. TrEMBL
Match: tr|A0A2N9HU28|A0A2N9HU28_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43095 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 6.9e-62
Identity = 153/231 (66.23%), Postives = 171/231 (74.03%), Query Frame = 0


Query: 1   MQDP-STFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGA 60
           MQDP +TF  +KP FPEQEQLKCPRC+S NTKFCYYNNYNLSQPRHFCKNCRRYWTKGGA
Sbjct: 1   MQDPAATFHPVKPHFPEQEQLKCPRCESANTKFCYYNNYNLSQPRHFCKNCRRYWTKGGA 60

Query: 61  LRNIPVGGGSRKNA---KRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGG- 120
           LRNIPVGGGSRKN          XXXXXXXXXXXXXXXXX  NP  G +H+P R YG G 
Sbjct: 61  LRNIPVGGGSRKNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXNP--GQEHDPARIYGVGA 120

Query: 121 --------LEIPGSFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNS------G 180
                   L+I GSFSSLL SNGQ+G+LLE ++PN  ++KM ++G F+ENLNS      G
Sbjct: 121 PVDQDHRMLDITGSFSSLLTSNGQFGSLLEGLNPNGSDVKMSQMGDFAENLNSGRVLDTG 180

Query: 181 SGRKSAAEEQSGCVPENYLGVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
           SGR    E QS    E+YLG LQNGDSS W   G+NGWPDLAI+TPGSS Q
Sbjct: 181 SGRNPGMEVQSNSNSESYLG-LQNGDSSYW--AGANGWPDLAIYTPGSSLQ 226

[Close]

BLAST of Carg04300-RA vs. TrEMBL
Match: tr|A0A1U8ALW5|A0A1U8ALW5_NELNU (dof zinc finger protein DOF3.1-like OS=Nelumbo nucifera OX=4432 GN=LOC104604417 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.4e-61
Identity = 131/217 (60.37%), Postives = 150/217 (69.12%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDPSTF  +KP FPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPSTFQPVKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKR-----PAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGGG 120
           RNIPVGGGSRKN KR         XXXX                P+T  DH+        
Sbjct: 61  RNIPVGGGSRKNTKRXXXXXXXXXXXXXQNAAVPKPEPTGTFSPPVTTIDHDRRM----- 120

Query: 121 LEIPGSFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSGCV 180
           L+I GSFSSLLASNGQ GNLL+ ++P+    + ++ G F+EN NS S   S  E Q    
Sbjct: 121 LDISGSFSSLLASNGQMGNLLDGLNPSSSGTRTLQFGEFAENSNSSSIENSTLELQGNNN 180

Query: 181 PENYLGVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
            E++LG+ Q+GDSSCW  G  NGWPDLAI+TPGS++Q
Sbjct: 181 QESFLGI-QDGDSSCW--GSGNGWPDLAIYTPGSTFQ 209

[Close]

BLAST of Carg04300-RA vs. TrEMBL
Match: tr|A0A2I4DRY8|A0A2I4DRY8_9ROSI (dof zinc finger protein DOF3.1-like OS=Juglans regia OX=51240 GN=LOC108982895 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.2e-59
Identity = 142/221 (64.25%), Postives = 166/221 (75.11%), Query Frame = 0


Query: 1   MQDPSTFPMIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60
           MQDP+TF  IKP FPEQE LKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL
Sbjct: 1   MQDPATFQPIKPHFPEQELLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGAL 60

Query: 61  RNIPVGGGSRKNAKRPAVSXXXXXXXXXXXXXXXXXMLNPITGPDHNPIRGYGG------ 120
           RNIPVGGG+RK        XXXXXXXXXXXXXXXXX+ NP  GP+H+P R YG       
Sbjct: 61  RNIPVGGGTRKXXXXXXXXXXXXXXXXXXXXXXXXXVENP--GPEHDPNRLYGSMVDQDR 120

Query: 121 -GLEIPGSFSSLLASNGQYGNLLESMDPNQPEMKMMELGGFSENLNSGSGRKSAAEEQSG 180
             L+I GSF SLLASNGQ+ +LLE ++P++  +KM+++G F+ENLNSG   ++ +    G
Sbjct: 121 RMLDITGSFGSLLASNGQFSSLLEGLNPDESGVKMLQMGEFAENLNSGHVLETGSVRNLG 180

Query: 181 C-------VPENYLGVLQNGDSSCWTGGGSNGWPDLAIFTP 208
                     E+YLG LQ+GDSSCWT G  NGWPDL+I+TP
Sbjct: 181 MDVQISDNNSESYLG-LQSGDSSCWTDG--NGWPDLSIYTP 216

The following BLAST results are available for this feature:

BLAST of Carg04300-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948818.1	2.1e-110	99.53	dof zinc finger protein DOF1.7-like [Cucurbita moschata]	[more]
XP_023523362.1	2.3e-109	99.06	dof zinc finger protein DOF1.7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997902.1	5.7e-100	92.45	dof zinc finger protein DOF1.7-like [Cucurbita maxima]	[more]
KGN59833.1	2.7e-89	78.30	hypothetical protein Csa_3G849890 [Cucumis sativus]	[more]
XP_008447593.1	1.2e-84	80.66	PREDICTED: dof zinc finger protein DOF1.7-like [Cucumis melo]	[more]

BLAST of Carg04300-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51700.1	2.3e-34	57.04	DOF zinc finger protein 1	[more]
AT3G21270.1	1.9e-33	61.39	DOF zinc finger protein 2	[more]
AT3G50410.1	7.8e-27	78.13	OBF binding protein 1	[more]
AT5G66940.1	2.3e-26	81.67	Dof-type zinc finger DNA-binding family protein	[more]
AT5G60850.1	5.1e-26	86.21	OBF binding protein 4	[more]

BLAST of Carg04300-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82155\|DOF17_ARATH	4.1e-33	57.04	Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV...	[more]
sp\|Q94AR6\|DOF31_ARATH	3.5e-32	61.39	Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV...	[more]
sp\|Q39088\|DOF34_ARATH	1.4e-25	78.13	Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV...	[more]
sp\|Q6Z345\|DOF4_ORYSJ	3.1e-25	84.21	Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 ...	[more]
sp\|Q9FGD6\|DOF58_ARATH	4.1e-25	81.67	Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV...	[more]

BLAST of Carg04300-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDG2\|A0A0A0LDG2_CUCSA	1.8e-89	78.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849890 PE=4 SV=1	[more]
tr\|A0A1S3BHT0\|A0A1S3BHT0_CUCME	7.6e-85	80.66	dof zinc finger protein DOF1.7-like OS=Cucumis melo OX=3656 GN=LOC103490008 PE=4...	[more]
tr\|A0A2N9HU28\|A0A2N9HU28_FAGSY	6.9e-62	66.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43095 PE=4 SV=1	[more]
tr\|A0A1U8ALW5\|A0A1U8ALW5_NELNU	3.4e-61	60.37	dof zinc finger protein DOF3.1-like OS=Nelumbo nucifera OX=4432 GN=LOC104604417 ...	[more]
tr\|A0A2I4DRY8\|A0A2I4DRY8_9ROSI	7.2e-59	64.25	dof zinc finger protein DOF3.1-like OS=Juglans regia OX=51240 GN=LOC108982895 PE...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04300	Carg04300	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04300-RA.CDS.1	Carg04300-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04300-RA.exon.1	Carg04300-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04300-RA	Carg04300-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 18..74 e-value: 1.2E-33 score: 114.9
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 22..58
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 11..75 e-value: 1.0E-29 score: 322.0
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 20..74 score: 29.544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..114
None	No IPR available	PANTHER	PTHR31992:SF23	DOF ZINC FINGER PROTEIN DOF3.1	coord: 1..209
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 1..209