Carg04274-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04274-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ethylene-responsive transcription factor TINY
Location	Cucurbita_argyrosperma_scaffold_044 : 1145025 .. 1145324 (-)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

mRNA sequence

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

Coding sequence (CDS)

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

Protein sequence

MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE

Homology

[Close]

BLAST of Carg04274-RA vs. NCBI nr
Match: XP_022949201.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MPTDIQAAAAKAAAMVDFDST+PTTSSSN EEGSDELGEIVELPNIEEEISAES NKFEL
Sbjct: 97  MPTDIQAAAAKAAAMVDFDSTVPTTSSSNDEEGSDELGEIVELPNIEEEISAESLNKFEL 156

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           VDSVDWWGNPPYT AETDFFAGFSDQ TIPVIFDGGDWE
Sbjct: 157 VDSVDWWGNPPYTAAETDFFAGFSDQCTIPVIFDGGDWE 195

[Close]

BLAST of Carg04274-RA vs. NCBI nr
Match: XP_022997866.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQAAAAKAAAMVDFDSTMPTTSSSN EEGSDELGEIVELPNIEEEISAESWNKFEL
Sbjct: 97  MPRDIQAAAAKAAAMVDFDSTMPTTSSSNDEEGSDELGEIVELPNIEEEISAESWNKFEL 156

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           VDSVDWWGNPPYTVAETDF  GFS QSTIPVIFDGGDWE
Sbjct: 157 VDSVDWWGNPPYTVAETDFVGGFSYQSTIPVIFDGGDWE 195

[Close]

BLAST of Carg04274-RA vs. NCBI nr
Match: XP_008447541.1 (PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDELGEIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274-RA vs. NCBI nr
Match: XP_011651488.1 (PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 77/99 (77.78%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDEL EIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274-RA vs. NCBI nr
Match: XP_023528290.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTT-SSSNHEEGSDELGEIVELPNIEEEISAESWNKFE 60
           MP DIQAAAAKAAAMVDFD+T   + SSSN+E GSDELGEIVELPNIEE+I AESW++FE
Sbjct: 100 MPRDIQAAAAKAAAMVDFDTTRTASFSSSNYEGGSDELGEIVELPNIEEDIRAESWSEFE 159

Query: 61  LVDSVDWWGNPPYTVAETDFFAGFSDQS-TIPVIFDGGDWE 100
            +DSVDWWGNPP+  AE DF   F+DQS T    F+GGDWE
Sbjct: 160 FIDSVDWWGNPPFVAAEMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Carg04274-RA vs. TrEMBL
Match: tr|A0A1S3BHN5|A0A1S3BHN5_CUCME (ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC103489964 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDELGEIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274-RA vs. TrEMBL
Match: tr|A0A0A0LAT8|A0A0A0LAT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
          MP DIQ AAAKAAAMVDFDS   T S SN EEGSDEL EIVELPNIEE+I AESWN+FE 
Sbjct: 1  MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEF 60

Query: 61 VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVI 93
          +DSVDWWGNPP+T AE DF A FSDQST P I
Sbjct: 61 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPEI 90

[Close]

BLAST of Carg04274-RA vs. TrEMBL
Match: tr|A0A0D2QNZ7|A0A0D2QNZ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G063500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP DIQ AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 123 MPRDIQVAAAKAASMVNF-NTLPSSSSSLCEPNASEQADELSEIVELPNIECSFQSLFDS 182

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 183 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 226

[Close]

BLAST of Carg04274-RA vs. TrEMBL
Match: tr|A0A2P5SSN9|A0A2P5SSN9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00891 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP D+Q AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 87  MPRDVQVAAAKAASMVNF-NTLPSSSSSLSEPNASEQADELSEIVELPNIECSFQSLFDS 146

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 147 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 190

[Close]

BLAST of Carg04274-RA vs. TrEMBL
Match: tr|A0A1U8NTC9|A0A1U8NTC9_GOSHI (dehydration-responsive element-binding protein 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107950922 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP DIQ AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 123 MPRDIQVAAAKAASMVNF-NTLPSSSSSLCEPNALEQADELSEIVELPNIECSFQSLFDS 182

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 183 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 226

The following BLAST results are available for this feature:

BLAST of Carg04274-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949201.1	4.2e-45	94.95	ethylene-responsive transcription factor TINY-like [Cucurbita moschata]	[more]
XP_022997866.1	4.2e-45	94.95	ethylene-responsive transcription factor TINY-like [Cucurbita maxima]	[more]
XP_008447541.1	3.3e-34	78.79	PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo]	[more]
XP_011651488.1	1.6e-33	77.78	PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus]	[more]
XP_023528290.1	2.9e-30	71.29	ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04274-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04274-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04274-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHN5\|A0A1S3BHN5_CUCME	2.2e-34	78.79	ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LAT8\|A0A0A0LAT8_CUCSA	2.8e-29	77.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1	[more]
tr\|A0A0D2QNZ7\|A0A0D2QNZ7_GOSRA	6.9e-12	50.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G063500 PE=4 ...	[more]
tr\|A0A2P5SSN9\|A0A2P5SSN9_GOSBA	9.0e-12	49.09	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00891 PE=4 SV...	[more]
tr\|A0A1U8NTC9\|A0A1U8NTC9_GOSHI	1.5e-11	50.00	dehydration-responsive element-binding protein 3-like OS=Gossypium hirsutum OX=3...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04274	Carg04274	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04274-RA.CDS.1	Carg04274-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04274-RA.exon.1	Carg04274-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04274-RA	Carg04274-RA-protein	polypeptide