Carg04274 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04274
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ethylene-responsive transcription factor TINY
Location	Cucurbita_argyrosperma_scaffold_044 : 1145025 .. 1145324 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

mRNA sequence

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

Coding sequence (CDS)

ATGCCCACAGATATTCAGGCTGCGGCAGCCAAGGCAGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAATCATGAAGAAGGGTCGGATGAGTTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCTTTGCAGGGTTTTCCGATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA

Protein sequence

MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE

Homology

[Close]

BLAST of Carg04274 vs. NCBI nr
Match: XP_022949201.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MPTDIQAAAAKAAAMVDFDST+PTTSSSN EEGSDELGEIVELPNIEEEISAES NKFEL
Sbjct: 97  MPTDIQAAAAKAAAMVDFDSTVPTTSSSNDEEGSDELGEIVELPNIEEEISAESLNKFEL 156

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           VDSVDWWGNPPYT AETDFFAGFSDQ TIPVIFDGGDWE
Sbjct: 157 VDSVDWWGNPPYTAAETDFFAGFSDQCTIPVIFDGGDWE 195

[Close]

BLAST of Carg04274 vs. NCBI nr
Match: XP_022997866.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 4.2e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQAAAAKAAAMVDFDSTMPTTSSSN EEGSDELGEIVELPNIEEEISAESWNKFEL
Sbjct: 97  MPRDIQAAAAKAAAMVDFDSTMPTTSSSNDEEGSDELGEIVELPNIEEEISAESWNKFEL 156

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           VDSVDWWGNPPYTVAETDF  GFS QSTIPVIFDGGDWE
Sbjct: 157 VDSVDWWGNPPYTVAETDFVGGFSYQSTIPVIFDGGDWE 195

[Close]

BLAST of Carg04274 vs. NCBI nr
Match: XP_008447541.1 (PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDELGEIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274 vs. NCBI nr
Match: XP_011651488.1 (PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 77/99 (77.78%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDEL EIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274 vs. NCBI nr
Match: XP_023528290.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTT-SSSNHEEGSDELGEIVELPNIEEEISAESWNKFE 60
           MP DIQAAAAKAAAMVDFD+T   + SSSN+E GSDELGEIVELPNIEE+I AESW++FE
Sbjct: 100 MPRDIQAAAAKAAAMVDFDTTRTASFSSSNYEGGSDELGEIVELPNIEEDIRAESWSEFE 159

Query: 61  LVDSVDWWGNPPYTVAETDFFAGFSDQS-TIPVIFDGGDWE 100
            +DSVDWWGNPP+  AE DF   F+DQS T    F+GGDWE
Sbjct: 160 FIDSVDWWGNPPFVAAEMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Carg04274 vs. TrEMBL
Match: tr|A0A1S3BHN5|A0A1S3BHN5_CUCME (ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC103489964 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-34
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
           MP DIQ AAAKAAAMVDFDS   T S SN EEGSDELGEIVELPNIEE+I AESWN+FE 
Sbjct: 105 MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELGEIVELPNIEEDIRAESWNEFEF 164

Query: 61  VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVIFDGGDWE 100
           +DSVDWWGNPP+T AE DF A FSDQST PV FD GDWE
Sbjct: 165 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Carg04274 vs. TrEMBL
Match: tr|A0A0A0LAT8|A0A0A0LAT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MPTDIQAAAAKAAAMVDFDSTMPTTSSSNHEEGSDELGEIVELPNIEEEISAESWNKFEL 60
          MP DIQ AAAKAAAMVDFDS   T S SN EEGSDEL EIVELPNIEE+I AESWN+FE 
Sbjct: 1  MPRDIQEAAAKAAAMVDFDS--ETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEF 60

Query: 61 VDSVDWWGNPPYTVAETDFFAGFSDQSTIPVI 93
          +DSVDWWGNPP+T AE DF A FSDQST P I
Sbjct: 61 IDSVDWWGNPPFTAAEMDFCAVFSDQSTAPEI 90

[Close]

BLAST of Carg04274 vs. TrEMBL
Match: tr|A0A0D2QNZ7|A0A0D2QNZ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G063500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP DIQ AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 123 MPRDIQVAAAKAASMVNF-NTLPSSSSSLCEPNASEQADELSEIVELPNIECSFQSLFDS 182

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 183 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 226

[Close]

BLAST of Carg04274 vs. TrEMBL
Match: tr|A0A2P5SSN9|A0A2P5SSN9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00891 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP D+Q AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 87  MPRDVQVAAAKAASMVNF-NTLPSSSSSLSEPNASEQADELSEIVELPNIECSFQSLFDS 146

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 147 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 190

[Close]

BLAST of Carg04274 vs. TrEMBL
Match: tr|A0A1U8NTC9|A0A1U8NTC9_GOSHI (dehydration-responsive element-binding protein 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107950922 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MPTDIQAAAAKAAAMVDFDSTMPTTSSS----NHEEGSDELGEIVELPNIEEEISA--ES 60
           MP DIQ AAAKAA+MV+F +T+P++SSS    N  E +DEL EIVELPNIE    +  +S
Sbjct: 123 MPRDIQVAAAKAASMVNF-NTLPSSSSSLCEPNALEQADELSEIVELPNIECSFQSLFDS 182

Query: 61  WNKFELVDSVDWWGNPPYTVAETDFFAGFSDQ-----STIPVIFDGGDWE 100
             +F  VDSVD W  PP      DF+ GFSDQ     + IP  F+   WE
Sbjct: 183 QGEFVPVDSVDGWVYPP-----QDFYGGFSDQIWSCENLIPANFEPSVWE 226

The following BLAST results are available for this feature:

BLAST of Carg04274 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949201.1	4.2e-45	94.95	ethylene-responsive transcription factor TINY-like [Cucurbita moschata]	[more]
XP_022997866.1	4.2e-45	94.95	ethylene-responsive transcription factor TINY-like [Cucurbita maxima]	[more]
XP_008447541.1	3.3e-34	78.79	PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo]	[more]
XP_011651488.1	1.6e-33	77.78	PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus]	[more]
XP_023528290.1	2.9e-30	71.29	ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04274 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04274 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04274 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHN5\|A0A1S3BHN5_CUCME	2.2e-34	78.79	ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LAT8\|A0A0A0LAT8_CUCSA	2.8e-29	77.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455130 PE=4 SV=1	[more]
tr\|A0A0D2QNZ7\|A0A0D2QNZ7_GOSRA	6.9e-12	50.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G063500 PE=4 ...	[more]
tr\|A0A2P5SSN9\|A0A2P5SSN9_GOSBA	9.0e-12	49.09	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00891 PE=4 SV...	[more]
tr\|A0A1U8NTC9\|A0A1U8NTC9_GOSHI	1.5e-11	50.00	dehydration-responsive element-binding protein 3-like OS=Gossypium hirsutum OX=3...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04274-RA	Carg04274-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04274	Csa3G455130	Cucumber (Chinese Long) v2	carcuB0224
Carg04274	CmaCh01G000990	Cucurbita maxima (Rimu)	carcmaB0278
Carg04274	CmoCh01G001020	Cucurbita moschata (Rifu)	carcmoB0285
Carg04274	Cp4.1LG02g14570	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04274	Cla97C07G140090	Watermelon (97103) v2	carwmbB0205
Carg04274	Bhi01G002620	Wax gourd	carwgoB0249

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04274	Carg06467	Silver-seed gourd	carcarB139

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04274	Silver-seed gourd	carcarB042
Carg04274	Silver-seed gourd	carcarB233
Carg04274	Silver-seed gourd	carcarB234
Carg04274	Silver-seed gourd	carcarB238
Carg04274	Silver-seed gourd	carcarB240
Carg04274	Cucumber (Gy14) v2	carcgybB0212
Carg04274	Cucumber (Gy14) v2	carcgybB0219
Carg04274	Cucumber (Gy14) v1	carcgyB0239
Carg04274	Cucumber (Gy14) v1	carcgyB0248
Carg04274	Cucurbita maxima (Rimu)	carcmaB0270
Carg04274	Cucurbita maxima (Rimu)	carcmaB0276
Carg04274	Cucurbita maxima (Rimu)	carcmaB0277
Carg04274	Cucurbita maxima (Rimu)	carcmaB0282
Carg04274	Cucurbita maxima (Rimu)	carcmaB0283
Carg04274	Cucurbita moschata (Rifu)	carcmoB0277
Carg04274	Cucurbita moschata (Rifu)	carcmoB0279
Carg04274	Cucurbita moschata (Rifu)	carcmoB0283
Carg04274	Cucurbita moschata (Rifu)	carcmoB0284
Carg04274	Cucurbita moschata (Rifu)	carcmoB0289
Carg04274	Cucurbita pepo (Zucchini)	carcpeB0280
Carg04274	Cucurbita pepo (Zucchini)	carcpeB0283
Carg04274	Cucurbita pepo (Zucchini)	carcpeB0284
Carg04274	Cucurbita pepo (Zucchini)	carcpeB0287
Carg04274	Cucurbita pepo (Zucchini)	carcpeB0290
Carg04274	Wild cucumber (PI 183967)	carcpiB0237
Carg04274	Wild cucumber (PI 183967)	carcpiB0224
Carg04274	Wild cucumber (PI 183967)	carcpiB0231
Carg04274	Cucumber (Chinese Long) v2	carcuB0217
Carg04274	Cucumber (Chinese Long) v3	carcucB0223
Carg04274	Cucumber (Chinese Long) v3	carcucB0227
Carg04274	Cucumber (Chinese Long) v3	carcucB0234
Carg04274	Bottle gourd (USVL1VR-Ls)	carlsiB175
Carg04274	Bottle gourd (USVL1VR-Ls)	carlsiB177
Carg04274	Bottle gourd (USVL1VR-Ls)	carlsiB182
Carg04274	Melon (DHL92) v3.5.1	carmeB0202
Carg04274	Melon (DHL92) v3.5.1	carmeB0204
Carg04274	Melon (DHL92) v3.5.1	carmeB0209
Carg04274	Melon (DHL92) v3.6.1	carmedB0207
Carg04274	Melon (DHL92) v3.6.1	carmedB0209
Carg04274	Melon (DHL92) v3.6.1	carmedB0214
Carg04274	Watermelon (Charleston Gray)	carwcgB0189
Carg04274	Watermelon (Charleston Gray)	carwcgB0192
Carg04274	Watermelon (Charleston Gray)	carwcgB0199
Carg04274	Watermelon (97103) v1	carwmB0192
Carg04274	Watermelon (97103) v1	carwmB0195
Carg04274	Watermelon (97103) v2	carwmbB0201
Carg04274	Watermelon (97103) v2	carwmbB0203
Carg04274	Watermelon (97103) v2	carwmbB0208
Carg04274	Wax gourd	carwgoB0255