Carg04227-RA (mRNA) Silver-seed gourd

Overview
NameCarg04227-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpseudo histidine-containing phosphotransfer protein 6
LocationCucurbita_argyrosperma_scaffold_044 : 950913 .. 952340 (+)
Sequence length150
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAGTAAATTTCATAAACTCTCTCTCTTTTATTTTTCACTTTTTCATTTGGTGCCTTTACAATGCGATTGTTCTTCAATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCAATAAGGGTTCAAGGGTTTTGCTTCAATTACTCAAAAAAATGAAATTCATTTTTTTGTGTAATAATGATTTTTCTAACAAGGGTTTAATGTGTTTCTTCAAATTTTAGAACCATATTAAATGTTTTGCTTGAATCACGCTTGAAATGGGGAGAAAATGATGTTGGAATTGTTAGATTCTGTCCACTTTTAGGTAAGCTCTTATGACTTTGCTTTTAGTCTCTTCAAAAGACCTCATAGCAATAAAGACAGTATTAGTTGATTATAAACTCATGATCATTCAACACGAATGAATTTGAAAATTCTTGCTCGTATTAACTTTTTTCATCACTAAATTCAATTTTTGTAATGCAGGGAGTATTAGACGAACAATTCTTGCAGCTACAACAGCTTCAAGATGAAAGCTCTCCAAATTTCGTATCGGAAGTAGTGAACATTTACTTTCAAGAATCGGAGCGGCTGTTGAAAAACCTAAGAGCGTTGTTGTAAGTCTTTGTTTTGTAGTTCTCATGCACAGACACACAAAGAATAAGAATAAGGAAAGGTTGTTGATGGGGGTTAGGGTTTTTGTTTGGATTGGACAGAATTGAGAGAGAGCTGACTGATTACAAGAAGATGGGAAACCATTTGAATCAGCTGATGGGGAGCAGCTCAAGCATTGGAGCTAACAGAGTCAGAAATGTTTGCATTGCATTTCGAGCCAATTCTGAACAAAGCAACCGTGCTGGGTAATTATTTAATCAAAACCCCCCCATTTTTATCCTTTTTATCTTCTTATTTATCATCACTCAAAAAAAACACATAATCTGGGTTACCCTTTTTGAGATTTTCAAAGTGGAATACATCTTCATTGTTACGAGGCCTTTTGGAGAAACGTACTCATGTTCAAAATGGACAATTGGCAGGTGTTTGAGAGCATTGGAAGTACTTGAACACGAGTATTGTTATTTAAAGAGCAAACTTCACGAGCTGTTTCAGGTGAGTTGAAGATAGGGAAAGACGAAAGTTGTTGTATAAAAATTGTTACACAAAAAAGGCAGCTTTTTTTTTATTTAGCTTTTGCAATTTGCATGTGATGCAGATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

mRNA sequence

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Coding sequence (CDS)

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Protein sequence

AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN
Homology
[Close]
BLAST of Carg04227-RA vs. NCBI nr
Match: XP_008454224.1 (PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227-RA vs. NCBI nr
Match: KJB35121.1 (hypothetical protein B456_006G101300 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 56 AKTGLPLWMLGLDADRLRADLNRLLAFLFHQ 86

[Close]
BLAST of Carg04227-RA vs. NCBI nr
Match: PQQ15743.1 (histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1   AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
           AKTGLP+WMLG   DRLRADMNRLLA+LFHQ
Sbjct: 73  AKTGLPVWMLGLGVDRLRADMNRLLAMLFHQ 103

[Close]
BLAST of Carg04227-RA vs. NCBI nr
Match: PQQ18532.1 (histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG   DRLRADMNRLLA+LFHQ
Sbjct: 66 AKTGLPVWMLGLGVDRLRADMNRLLAMLFHQ 96

[Close]
BLAST of Carg04227-RA vs. NCBI nr
Match: XP_014500874.2 (histidine-containing phosphotransfer protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-05
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLGF AD L ADMNRLLA LFHQ
Sbjct: 59 AKTGLPLWMLGFGADLLWADMNRLLAFLFHQ 89

[Close]
BLAST of Carg04227-RA vs. TrEMBL
Match: tr|A0A1S3BY84|A0A1S3BY84_CUCME (pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN=LOC103494696 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227-RA vs. TrEMBL
Match: tr|A0A0D2S035|A0A0D2S035_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G101300 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 56 AKTGLPLWMLGLDADRLRADLNRLLAFLFHQ 86

[Close]
BLAST of Carg04227-RA vs. TrEMBL
Match: tr|A0A2P5SCN4|A0A2P5SCN4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06168 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGSGADRLRADVNRLLAFLFHQ 50

[Close]
BLAST of Carg04227-RA vs. TrEMBL
Match: tr|A0A1U8ITT0|A0A1U8ITT0_GOSHI (pseudo histidine-containing phosphotransfer protein 6-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107900369 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGPGADRLRADVNRLLAFLFHQ 50

[Close]
BLAST of Carg04227-RA vs. TrEMBL
Match: tr|A0A1U8ITU2|A0A1U8ITU2_GOSHI (pseudo histidine-containing phosphotransfer protein 6-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107900369 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGPGADRLRADVNRLLAFLFHQ 50

The following BLAST results are available for this feature:
BLAST of Carg04227-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454224.16.5e-0790.32PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo][more]
KJB35121.13.2e-0687.10hypothetical protein B456_006G101300 [Gossypium raimondii][more]
PQQ15743.15.5e-0683.87histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora][more]
PQQ18532.15.5e-0683.87histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora][more]
XP_014500874.21.6e-0587.10histidine-containing phosphotransfer protein 1 [Vigna radiata var. radiata][more]
BLAST of Carg04227-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg04227-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg04227-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BY84|A0A1S3BY84_CUCME4.3e-0790.32pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0D2S035|A0A0D2S035_GOSRA2.1e-0687.10Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G101300 PE=4 ... [more]
tr|A0A2P5SCN4|A0A2P5SCN4_GOSBA1.1e-0583.87Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06168 PE=4 SV... [more]
tr|A0A1U8ITT0|A0A1U8ITT0_GOSHI1.8e-0583.87pseudo histidine-containing phosphotransfer protein 6-like isoform X1 OS=Gossypi... [more]
tr|A0A1U8ITU2|A0A1U8ITU2_GOSHI1.8e-0583.87pseudo histidine-containing phosphotransfer protein 6-like isoform X2 OS=Gossypi... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg04227Carg04227gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04227-RA.exon.1Carg04227-RA.exon.1exon
Carg04227-RA.exon.2Carg04227-RA.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04227-RA.CDS.1Carg04227-RA.CDS.1CDS
Carg04227-RA.CDS.2Carg04227-RA.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg04227-RACarg04227-RA-proteinpolypeptide