Carg04227 (gene) Silver-seed gourd

Overview
NameCarg04227
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpseudo histidine-containing phosphotransfer protein 6
LocationCucurbita_argyrosperma_scaffold_044 : 950913 .. 952340 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAGTAAATTTCATAAACTCTCTCTCTTTTATTTTTCACTTTTTCATTTGGTGCCTTTACAATGCGATTGTTCTTCAATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCCATAAGGATTCAAGGGTTTTGCTTCAATTGCGATTGTTCTTCAATAAGGGTTCAAGGGTTTTGCTTCAATTACTCAAAAAAATGAAATTCATTTTTTTGTGTAATAATGATTTTTCTAACAAGGGTTTAATGTGTTTCTTCAAATTTTAGAACCATATTAAATGTTTTGCTTGAATCACGCTTGAAATGGGGAGAAAATGATGTTGGAATTGTTAGATTCTGTCCACTTTTAGGTAAGCTCTTATGACTTTGCTTTTAGTCTCTTCAAAAGACCTCATAGCAATAAAGACAGTATTAGTTGATTATAAACTCATGATCATTCAACACGAATGAATTTGAAAATTCTTGCTCGTATTAACTTTTTTCATCACTAAATTCAATTTTTGTAATGCAGGGAGTATTAGACGAACAATTCTTGCAGCTACAACAGCTTCAAGATGAAAGCTCTCCAAATTTCGTATCGGAAGTAGTGAACATTTACTTTCAAGAATCGGAGCGGCTGTTGAAAAACCTAAGAGCGTTGTTGTAAGTCTTTGTTTTGTAGTTCTCATGCACAGACACACAAAGAATAAGAATAAGGAAAGGTTGTTGATGGGGGTTAGGGTTTTTGTTTGGATTGGACAGAATTGAGAGAGAGCTGACTGATTACAAGAAGATGGGAAACCATTTGAATCAGCTGATGGGGAGCAGCTCAAGCATTGGAGCTAACAGAGTCAGAAATGTTTGCATTGCATTTCGAGCCAATTCTGAACAAAGCAACCGTGCTGGGTAATTATTTAATCAAAACCCCCCCATTTTTATCCTTTTTATCTTCTTATTTATCATCACTCAAAAAAAACACATAATCTGGGTTACCCTTTTTGAGATTTTCAAAGTGGAATACATCTTCATTGTTACGAGGCCTTTTGGAGAAACGTACTCATGTTCAAAATGGACAATTGGCAGGTGTTTGAGAGCATTGGAAGTACTTGAACACGAGTATTGTTATTTAAAGAGCAAACTTCACGAGCTGTTTCAGGTGAGTTGAAGATAGGGAAAGACGAAAGTTGTTGTATAAAAATTGTTACACAAAAAAGGCAGCTTTTTTTTTATTTAGCTTTTGCAATTTGCATGTGATGCAGATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

mRNA sequence

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Coding sequence (CDS)

GCCAAAACGGGTCTGCCTCTGTGGATGCTTGGCTTCAGCGCCGACAGGTTGCGAGCCGACATGAACCGCTTACTCGCCCTACTCTTCCACCAAATAGAGCAGCAAAGAGCGTTGGGCGCAGGAGTTAGGTACCCAATGCAACAGAATTGA

Protein sequence

AKTGLPLWMLGFSADRLRADMNRLLALLFHQIEQQRALGAGVRYPMQQN
Homology
[Close]
BLAST of Carg04227 vs. NCBI nr
Match: XP_008454224.1 (PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: KJB35121.1 (hypothetical protein B456_006G101300 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 56 AKTGLPLWMLGLDADRLRADLNRLLAFLFHQ 86

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: PQQ15743.1 (histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1   AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
           AKTGLP+WMLG   DRLRADMNRLLA+LFHQ
Sbjct: 73  AKTGLPVWMLGLGVDRLRADMNRLLAMLFHQ 103

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: PQQ18532.1 (histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG   DRLRADMNRLLA+LFHQ
Sbjct: 66 AKTGLPVWMLGLGVDRLRADMNRLLAMLFHQ 96

[Close]
BLAST of Carg04227 vs. NCBI nr
Match: XP_014500874.2 (histidine-containing phosphotransfer protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-05
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLGF AD L ADMNRLLA LFHQ
Sbjct: 59 AKTGLPLWMLGFGADLLWADMNRLLAFLFHQ 89

[Close]
BLAST of Carg04227 vs. TrEMBL
Match: tr|A0A1S3BY84|A0A1S3BY84_CUCME (pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN=LOC103494696 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTG+P+WMLGF ADRLRADMNRLLALLFHQ
Sbjct: 22 AKTGVPVWMLGFRADRLRADMNRLLALLFHQ 52

[Close]
BLAST of Carg04227 vs. TrEMBL
Match: tr|A0A0D2S035|A0A0D2S035_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G101300 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLPLWMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 56 AKTGLPLWMLGLDADRLRADLNRLLAFLFHQ 86

[Close]
BLAST of Carg04227 vs. TrEMBL
Match: tr|A0A2P5SCN4|A0A2P5SCN4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06168 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGSGADRLRADVNRLLAFLFHQ 50

[Close]
BLAST of Carg04227 vs. TrEMBL
Match: tr|A0A1U8ITT0|A0A1U8ITT0_GOSHI (pseudo histidine-containing phosphotransfer protein 6-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107900369 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGPGADRLRADVNRLLAFLFHQ 50

[Close]
BLAST of Carg04227 vs. TrEMBL
Match: tr|A0A1U8ITU2|A0A1U8ITU2_GOSHI (pseudo histidine-containing phosphotransfer protein 6-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107900369 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  AKTGLPLWMLGFSADRLRADMNRLLALLFHQ 32
          AKTGLP+WMLG  ADRLRAD+NRLLA LFHQ
Sbjct: 20 AKTGLPVWMLGPGADRLRADVNRLLAFLFHQ 50

The following BLAST results are available for this feature:
BLAST of Carg04227 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454224.16.5e-0790.32PREDICTED: pseudo histidine-containing phosphotransfer protein 6 [Cucumis melo][more]
KJB35121.13.2e-0687.10hypothetical protein B456_006G101300 [Gossypium raimondii][more]
PQQ15743.15.5e-0683.87histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora][more]
PQQ18532.15.5e-0683.87histidine-containing phosphotransfer protein 6 [Prunus yedoensis var. nudiflora][more]
XP_014500874.21.6e-0587.10histidine-containing phosphotransfer protein 1 [Vigna radiata var. radiata][more]
BLAST of Carg04227 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg04227 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg04227 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BY84|A0A1S3BY84_CUCME4.3e-0790.32pseudo histidine-containing phosphotransfer protein 6 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0D2S035|A0A0D2S035_GOSRA2.1e-0687.10Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G101300 PE=4 ... [more]
tr|A0A2P5SCN4|A0A2P5SCN4_GOSBA1.1e-0583.87Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06168 PE=4 SV... [more]
tr|A0A1U8ITT0|A0A1U8ITT0_GOSHI1.8e-0583.87pseudo histidine-containing phosphotransfer protein 6-like isoform X1 OS=Gossypi... [more]
tr|A0A1U8ITU2|A0A1U8ITU2_GOSHI1.8e-0583.87pseudo histidine-containing phosphotransfer protein 6-like isoform X2 OS=Gossypi... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04227-RACarg04227-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04227Cla97C07G139390Watermelon (97103) v2carwmbB0205
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg04227Silver-seed gourdcarcarB139
Carg04227Silver-seed gourdcarcarB239
Carg04227Silver-seed gourdcarcarB240
Carg04227Cucumber (Gy14) v2carcgybB0215
Carg04227Cucumber (Gy14) v2carcgybB0218
Carg04227Cucumber (Gy14) v1carcgyB0235
Carg04227Cucumber (Gy14) v1carcgyB0238
Carg04227Cucurbita maxima (Rimu)carcmaB0273
Carg04227Cucurbita maxima (Rimu)carcmaB0276
Carg04227Cucurbita maxima (Rimu)carcmaB0277
Carg04227Cucurbita maxima (Rimu)carcmaB0278
Carg04227Cucurbita maxima (Rimu)carcmaB0284
Carg04227Cucurbita moschata (Rifu)carcmoB0280
Carg04227Cucurbita moschata (Rifu)carcmoB0283
Carg04227Cucurbita moschata (Rifu)carcmoB0284
Carg04227Cucurbita moschata (Rifu)carcmoB0285
Carg04227Cucurbita pepo (Zucchini)carcpeB0280
Carg04227Cucurbita pepo (Zucchini)carcpeB0283
Carg04227Cucurbita pepo (Zucchini)carcpeB0285
Carg04227Cucurbita pepo (Zucchini)carcpeB0287
Carg04227Cucurbita pepo (Zucchini)carcpeB0291
Carg04227Cucurbita pepo (Zucchini)carcpeB0292
Carg04227Wild cucumber (PI 183967)carcpiB0233
Carg04227Wild cucumber (PI 183967)carcpiB0236
Carg04227Cucumber (Chinese Long) v2carcuB0226
Carg04227Cucumber (Chinese Long) v2carcuB0229
Carg04227Cucumber (Chinese Long) v3carcucB0230
Carg04227Cucumber (Chinese Long) v3carcucB0233
Carg04227Bottle gourd (USVL1VR-Ls)carlsiB176
Carg04227Bottle gourd (USVL1VR-Ls)carlsiB179
Carg04227Bottle gourd (USVL1VR-Ls)carlsiB181
Carg04227Bottle gourd (USVL1VR-Ls)carlsiB182
Carg04227Melon (DHL92) v3.5.1carmeB0210
Carg04227Melon (DHL92) v3.6.1carmedB0203
Carg04227Melon (DHL92) v3.6.1carmedB0215
Carg04227Watermelon (Charleston Gray)carwcgB0197
Carg04227Watermelon (Charleston Gray)carwcgB0198
Carg04227Watermelon (Charleston Gray)carwcgB0199
Carg04227Watermelon (Charleston Gray)carwcgB0201
Carg04227Watermelon (97103) v1carwmB0189
Carg04227Watermelon (97103) v1carwmB0192
Carg04227Watermelon (97103) v1carwmB0193
Carg04227Watermelon (97103) v2carwmbB0207
Carg04227Watermelon (97103) v2carwmbB0204
Carg04227Watermelon (97103) v2carwmbB0209
Carg04227Wax gourdcarwgoB0246
Carg04227Wax gourdcarwgoB0250
Carg04227Wax gourdcarwgoB0253