Carg04206-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04206-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor
Location	Cucurbita_argyrosperma_scaffold_044 : 831681 .. 833454 (+)
Sequence length	642

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCCCTACAGATTGAAATCTCTTGCTAGCGAACTGTGGGAATCCTTCTCTTCCCAATATTTTTCTTTTTGAATTAAGGTTTAAAGAACAGAGGGGTGGGATTTATGTAGGTATGCTAGGATTGGAGTAAAGGGGCAGAAAATCACAACCCTGCAACAGCCAAGACCTTCATTTACTTGCATCTACCGCAGGCACTTGGTTGGAGTGCATAATTTTGTTGATTGCTGTACTTGTTTACAATGTTCTTGCAGGCTTAGAATTTTTCCCCCTTCGAATGTATCCTATTCTCTGATGTCATATTACTCTAGGTTTAACGAGGCAGCACAAATCTTTGAATATATTTTTACTTCAGATCCTAGTGCACAAGTTTCTTTGTATGATTGGGAAACACTGATCTTTCTAATACATCTGAAATTTACACCATACTTATTATTAATATTGTATTCACATTAGTTACCTTTTGTTTATATTTTTCGTTAATTCAATTCTCATTTGGATGTCAAACTGTATAGGTGTACATGGTCAAGTCGGGTTGGATTGAGAAATTTTTTTGGACCCACACAGAAATTTGGATTTGTTAGATTGGTAACTCAACTCAATCCTTTATTTTCTATAGAAAATTTTAAAAAAGTTTTATTTATTCTTAATTCATAATTATTTTATACAATTTTACATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATTAATTAGACCAACCCAAAAAGATATTTTAATATATTTTATAAGATTTTGTTCATCAACCTTAAGTTTTGTCCGATGAACTTGACACCCGAATTGAATATATTCGGGTTTAGAAAAATTAACTCGACCGGTTGGGTTGTGTTGGTTCAGTTGGAATTGTCAAGTTTATTGTACACCCTAACATGAAAAGCAAAAAGAAGAAAAAGACAAAAAAAAAGGTTGGTATAAATTTGGACTATTCCCAGGTCTCTCCCATTTCCATCACACACTCTCTCTCTCTCTCTTACAGTCTTTCTCTCTCTAAAATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTACTGTAACTCTTCTAATATCACTTCTCCTCTACTTTTGTACTATAAATTTTTAACTAATTAATGAACTAAATCGTTACTTTATTATTTTTAAATATCAAAATACGTTTCTTTAATAAATTATGATTTGATTTTTTTTTTTTTTTTTTCTTTTTGTCTCTCCTTCAGGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTCAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

mRNA sequence

ATGGTCTCTCCCATTTCCATCACACACTCTCTCTCTCTCTCTTACAGTCTTTCTCTCTCTAAAATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTCAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

Coding sequence (CDS)

ATGGTCTCTCCCATTTCCATCACACACTCTCTCTCTCTCTCTTACAGTCTTTCTCTCTCTAAAATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTCAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

Protein sequence

MVSPISITHSLSLSYSLSLSKMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNYLNDIESTNN

Homology

[Close]

BLAST of Carg04206-RA vs. NCBI nr
Match: XP_022949239.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 398.3 bits (1022), Expect = 1.7e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 82  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 141
           PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 142 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 201
           RQPTNFDDGYGASGVHFPETDSKWVAGG+AQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 202 NNYLNDIESTNN 214
           NNYLNDIESTNN
Sbjct: 181 NNYLNDIESTNN 192

[Close]

BLAST of Carg04206-RA vs. NCBI nr
Match: XP_023525763.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 1.9e-103
Identity = 184/192 (95.83%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 82  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 141
           PTNHN+PRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNSPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 142 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 201
             PTN +DGYGASGVH PETD+KWVAGG+AQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 PHPTNLNDGYGASGVHLPETDAKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 202 NNYLNDIESTNN 214
           NNYLNDIESTNN
Sbjct: 181 NNYLNDIESTNN 192

[Close]

BLAST of Carg04206-RA vs. NCBI nr
Match: XP_022998174.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99
Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 82  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 141
           PTN NAP HSLSAPPP SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNRNAPLHSLSAPPP-SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 142 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 201
            QPTN DD YG+SGVHFPETD+KWVAG +AQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 PQPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 202 NNYLNDIESTNN 214
           NN+LNDIESTNN
Sbjct: 181 NNHLNDIESTNN 191

[Close]

BLAST of Carg04206-RA vs. NCBI nr
Match: XP_008454208.1 (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 128/183 (69.95%), Postives = 143/183 (78.14%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCC-PNN 81
           M RPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 82  LPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPS 141
           L TNH+AP H  S   PSS LLTPTLIEKLQ+CR AS QM K Q      F+ RKSA P+
Sbjct: 61  LSTNHSAPHHP-SPASPSSKLLTPTLIEKLQRCRMASLQMTKAQ------FAVRKSADPT 120

Query: 142 RRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPN 201
           +   T  + G      H+PE +++WV+  + +E+ RLEDDHVEQMIQELLDLGSFEFCPN
Sbjct: 121 QSPATKLEGG------HWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPN 170

Query: 202 NNN 204
           NNN
Sbjct: 181 NNN 170

[Close]

BLAST of Carg04206-RA vs. NCBI nr
Match: XP_022153447.1 (ethylene-responsive transcription factor ERF003-like, partial [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 5.2e-61
Identity = 131/184 (71.20%), Postives = 136/184 (73.91%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 82  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            +NHNAP     S S   P S LLTPTLI+KL+KCR ASFQM KK+ P KTH SDR    
Sbjct: 61  SSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLSDR---- 120

Query: 142 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFC 201
            SRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 -SRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 165

Query: 202 PNNN 203
           PNNN
Sbjct: 181 PNNN 165

[Close]

BLAST of Carg04206-RA vs. TAIR10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 161.0 bits (406), Expect = 8.1e-40
Identity = 98/182 (53.85%), Postives = 107/182 (58.79%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 81
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N NA       P  SS LL+ TL  KL KC  AS QM K                
Sbjct: 61  TNFPYNPNA------IPTSSSKLLSATLTAKLHKCYMASLQMTKXXXXXXXXXXXXXXXX 120

Query: 142 PSRRQPTNFDDGYGASGVHFPETDSKWVAG--GQAQEIARLEDDHVEQMIQELLDLGSFE 199
                  N  + +   GV    T+ KW  G     Q    LE+DH+EQMI+ELL  GS E
Sbjct: 121 XXXXVTAN--ESHLNRGV-TETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIE 173

[Close]

BLAST of Carg04206-RA vs. TAIR10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 27 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 86
          +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

[Close]

BLAST of Carg04206-RA vs. TAIR10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 27  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 86
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 87  --NHNAPRH--SLSAPPPSSNLLTPTLIEKLQK 113
             +     H   +++P  S   L+  L  KL+K
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of Carg04206-RA vs. TAIR10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-17
Identity = 67/177 (37.85%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 27  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIM---CCPNNLPT 86
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 87  NHNAPRHSL--SAPPPSSNLLTPTLIEKLQK-CRTASFQMVKKQFPN-KTHFSDRKSAHP 146
             +   +SL  ++   S   L+  L  KL+K C+  +  +   +  N  +H    +    
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 147 SRRQP-----TNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLD 192
           S+  P         D   A      ET+   V     QE    +D    QMI+ELL+
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQE----DDQMAMQMIEELLN 177

[Close]

BLAST of Carg04206-RA vs. TAIR10
Match: AT1G22190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-16
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 23  ARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA 73
           A+P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA
Sbjct: 77  AKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAA 126

[Close]

BLAST of Carg04206-RA vs. Swiss-Prot
Match: sp|Q94AW5|ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 98/182 (53.85%), Postives = 107/182 (58.79%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 81
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N NA       P  SS LL+ TL  KL KC  AS QM K                
Sbjct: 61  TNFPYNPNA------IPTSSSKLLSATLTAKLHKCYMASLQMTKXXXXXXXXXXXXXXXX 120

Query: 142 PSRRQPTNFDDGYGASGVHFPETDSKWVAG--GQAQEIARLEDDHVEQMIQELLDLGSFE 199
                  N  + +   GV    T+ KW  G     Q    LE+DH+EQMI+ELL  GS E
Sbjct: 121 XXXXVTAN--ESHLNRGV-TETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIE 173

[Close]

BLAST of Carg04206-RA vs. Swiss-Prot
Match: sp|P16146|PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-31
Identity = 87/178 (48.88%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMC---CP 81
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAAR+MC     
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N NA + S      SS LL+ TLI KL +C  AS QM +   P+    + R  A 
Sbjct: 61  TNFPYNPNASQSS------SSKLLSATLIAKLHRCYMASLQMTR---PSSLPEAPRIIA- 120

Query: 142 PSRRQPTNFDDGYGASGVHFPE------------TDSKWVAGGQAQEIARLEDDHVEQ 185
                P N   G GA  +  P+             D K V    +Q+   LE+DH+ Q
Sbjct: 121 ----SPNNAVKGIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164

[Close]

BLAST of Carg04206-RA vs. Swiss-Prot
Match: sp|Q9XI33|WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 27 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 86
          +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

[Close]

BLAST of Carg04206-RA vs. Swiss-Prot
Match: sp|Q9LFN7|SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 27  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 86
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 87  --NHNAPRH--SLSAPPPSSNLLTPTLIEKLQK 113
             +     H   +++P  S   L+  L  KL+K
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of Carg04206-RA vs. Swiss-Prot
Match: sp|Q3E958|SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 67/177 (37.85%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 27  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIM---CCPNNLPT 86
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 87  NHNAPRHSL--SAPPPSSNLLTPTLIEKLQK-CRTASFQMVKKQFPN-KTHFSDRKSAHP 146
             +   +SL  ++   S   L+  L  KL+K C+  +  +   +  N  +H    +    
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 147 SRRQP-----TNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLD 192
           S+  P         D   A      ET+   V     QE    +D    QMI+ELL+
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQE----DDQMAMQMIEELLN 177

[Close]

BLAST of Carg04206-RA vs. TrEMBL
Match: tr|A0A1S3BY29|A0A1S3BY29_CUCME (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103494684 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.2e-63
Identity = 128/183 (69.95%), Postives = 143/183 (78.14%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCC-PNN 81
           M RPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 82  LPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPS 141
           L TNH+AP H  S   PSS LLTPTLIEKLQ+CR AS QM K Q      F+ RKSA P+
Sbjct: 61  LSTNHSAPHHP-SPASPSSKLLTPTLIEKLQRCRMASLQMTKAQ------FAVRKSADPT 120

Query: 142 RRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPN 201
           +   T  + G      H+PE +++WV+  + +E+ RLEDDHVEQMIQELLDLGSFEFCPN
Sbjct: 121 QSPATKLEGG------HWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPN 170

Query: 202 NNN 204
           NNN
Sbjct: 181 NNN 170

[Close]

BLAST of Carg04206-RA vs. TrEMBL
Match: tr|A0A0A0KVJ4|A0A0A0KVJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 127/193 (65.80%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCC-PNN 81
           M RPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 82  LPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPS 141
           L TNH+A  H  SA P SS LLTPT IEKLQ+CR AS QM K Q      F+ RKSA P+
Sbjct: 61  LSTNHSASHHPSSA-PLSSKLLTPTSIEKLQRCRMASLQMTKAQ------FAVRKSADPT 120

Query: 142 RRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPN 201
           +   T  D G      H+PE  ++WV   + +E+ RLED+HVEQMIQELLDLGSFEFCPN
Sbjct: 121 QSPATKLDGG------HWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCPN 180

Query: 202 NNNYLNDIESTNN 214
                     TNN
Sbjct: 181 XXXXXXXXXXTNN 180

[Close]

BLAST of Carg04206-RA vs. TrEMBL
Match: tr|W9RS58|W9RS58_9ROSA (Ethylene-responsive transcription factor OS=Morus notabilis OX=981085 GN=L484_025682 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 107/197 (54.31%), Postives = 121/197 (61.42%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 81
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYD+AARIMC P   
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDQAARIMCGPKAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N N P HS S    S+ LL+ TL  KLQKC  AS QM K+   ++ H +  +SA 
Sbjct: 61  TNFPYNPNEP-HSSS----SNKLLSDTLKAKLQKCNVASLQMAKQPVLSEPHVAQYRSAT 120

Query: 142 PSRRQPTNFDDGYGASGVHFPE--------TDSKWVAGGQAQEIAR--------LEDDHV 200
           P            G +G  +PE         +  WV G    EI+         LEDDH+
Sbjct: 121 PVSTSSAGIAGNRGMAGFEWPEKRGGVVDWPEGNWVGGNGQGEISSTNQQLIKPLEDDHI 180

[Close]

BLAST of Carg04206-RA vs. TrEMBL
Match: tr|A0A2C9V060|A0A2C9V060_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G064200 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 105/189 (55.56%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 81
           MAR QQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N N P+ S      SS LL+ TL  KL KC  AS Q  KK    +TH        
Sbjct: 61  TNFPCNPNEPQSS------SSKLLSTTLAAKLHKCHVASLQATKKNATKQTH-------- 120

Query: 142 PSRRQPTNFDDGYGASGVHFPETDS----KWV-----AGGQAQEIARLEDDHVEQMIQEL 199
               + T FD   G +G       S    KWV      G   Q+   LED H+EQMI+EL
Sbjct: 121 --EPEYTPFDSSNGIAGKSVESCSSWPEGKWVGEENEVGNSQQQDKELEDHHIEQMIEEL 173

[Close]

BLAST of Carg04206-RA vs. TrEMBL
Match: tr|A0A1R3J7C7|A0A1R3J7C7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18930 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 107/199 (53.77%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 81
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 82  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141
            N P N NAP+ S      SS LL+ TL  KL KC  AS QM K+Q           S H
Sbjct: 61  TNFPYNPNAPQSS------SSKLLSATLTAKLHKCYMASLQMTKQQ-----------SGH 120

Query: 142 -PSRRQPTN--FDDGYGASG-----------VHFPETDSKWVA-----GGQAQEIARLED 199
            P  + PT   F +  G +G           +   ET++ WV          Q+   LE+
Sbjct: 121 EPQNKAPTPHVFSNNGGIAGKNSGIMSPVRPLQIQETETNWVVKKTQDNETTQQFKPLEE 180

The following BLAST results are available for this feature:

BLAST of Carg04206-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949239.1	1.7e-107	99.48	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
XP_023525763.1	1.9e-103	95.83	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]
XP_022998174.1	1.7e-99	94.27	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]
XP_008454208.1	1.2e-62	69.95	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
XP_022153447.1	5.2e-61	71.20	ethylene-responsive transcription factor ERF003-like, partial [Momordica charant...	[more]

BLAST of Carg04206-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25190.1	8.1e-40	53.85	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	8.4e-21	73.02	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	8.7e-18	53.76	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	7.4e-17	37.85	Integrase-type DNA-binding superfamily protein	[more]
AT1G22190.1	8.2e-16	70.00	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Carg04206-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94AW5\|ERF03_ARATH	1.5e-38	53.85	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|P16146\|PZ02_LUPPO	3.9e-31	48.88	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
sp\|Q9XI33\|WIN1_ARATH	1.5e-19	73.02	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9LFN7\|SHN2_ARATH	1.6e-16	53.76	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q3E958\|SHN3_ARATH	1.3e-15	37.85	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Carg04206-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BY29\|A0A1S3BY29_CUCME	8.2e-63	69.95	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0KVJ4\|A0A0A0KVJ4_CUCSA	4.2e-59	65.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=4 SV=1	[more]
tr\|W9RS58\|W9RS58_9ROSA	1.1e-43	54.31	Ethylene-responsive transcription factor OS=Morus notabilis OX=981085 GN=L484_02...	[more]
tr\|A0A2C9V060\|A0A2C9V060_MANES	6.1e-42	55.56	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G064200 PE=4 SV=...	[more]
tr\|A0A1R3J7C7\|A0A1R3J7C7_9ROSI	1.4e-41	53.77	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18930 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04206	Carg04206	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04206-RA	Carg04206-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04206-RA.exon.1	Carg04206-RA.exon.1	exon
Carg04206-RA.exon.2	Carg04206-RA.exon.2	exon
Carg04206-RA.exon.3	Carg04206-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04206-RA.CDS.1	Carg04206-RA.CDS.1	CDS
Carg04206-RA.CDS.2	Carg04206-RA.CDS.2	CDS
Carg04206-RA.CDS.3	Carg04206-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 51..67 score: 70.91 coord: 29..40 score: 66.97
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 28..88 e-value: 1.5E-29 score: 114.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 28..73 e-value: 1.2E-10 score: 41.4
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 28..88 score: 18.913
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 27..76 e-value: 1.26767E-27 score: 100.039
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 27..87 e-value: 4.4E-24 score: 86.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	PANTHER	PTHR31194:SF4	SUBFAMILY NOT NAMED	coord: 22..200
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 22..200
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 28..77