Carg04182-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04182-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucosidase 2 subunit beta
Location	Cucurbita_argyrosperma_scaffold_044 : 649940 .. 652573 (+)
Sequence length	1815

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGAAAATTACATAAAATATAACTTAGGTAGTCAATAGTAGAATGAAGAGGAACTGCGCTCAGTTTGTGAAGTCTCCGAACTTTTGATCAATTTCAGCTCCTCCGATTGCCCTGAAGCTTATGATTTCGTTACCGCAGGCAAAATTTTGACAGAAATGGAAGCAGGTCATTCTCCAAAGTCCATGAGCTTCGTTTTGCTGCTTTCATTCTGTTTCTTCTTCGCTTCTGTTCGCTCTGTTCCATCACTTATCGGAGTGCACCCCCTTGGTAATCTTATCTTCTCTCTTTCTTTCTTTGACTGTGTGCTTGATCGTCTCACTGGATCTGGTTCTGCGAAGCTTAAAATTGAAATTTCTAGTGCTATTTCGCCCCTCATCCATCTAACTGCCCCTTTTGGGGTGTACCCATATTGTCAATTGATATTAAATTGGTGCCCATTCGGTAAAATTTTCTGAATTGAAATGTGTATTCGATTGCAGATGAGAAATATTATTCATCGGAGGTCATAAAATGCAAGGATGGGTCTCGATCTTTTACTATTGATCGTCTCAACGACGATTTCTGTGACTGCGTTGATGGGACCGATGAGCCTGGTGCTTTCTTAGTTCTTACTGGATTTTAATAATTAATGTTATGCCTTTCTAAGGATTTCCGATGCATAATTTGTTTCGAACATCTAATATCGATTTTCGAGTGGTTGAATTGATTGAGAAGTTCTGGTTTATGGAATGGAGAAGAAAATTTCTTACCGAAGACCTTCAATTTGAAATGGCTGTTGAAATTAGGTATTTAACTAAGACAACAATTAATAGCCATTGTAATCTGTCTTAAATGGGAACTTGGTAAAGTTTAATGTTCTATTGCATATCCTAGAAGATCATGACTTGTTTTTCTTTCTGAATTTTCACCGGCATGTTGAGAATTGGAATGTCGATACCGTATCTATTTTTTCCTGTATCATTAGAAAGTAGGATAGGTTCTGCATTAGAATGATACTGAACTTATAAGCAATAAATCCGAATTCCGGGATGGCCAATTGTTCATGTGAACAAAAGGAAAACAAACCTTTCCCAATAGGCAAGAAGAGACCACACTCACACAAATACTGTGCAAGGATCAGCCAATTGTCTCATGGATTTGACATTTGCAGGAACTTCTGCCTGTGCAAGAGGGAAGTTCTATTGCAGGAACATGGGAAGTACACCACGGTTCCTATTTTCTTCCCGCGTCAACGATCATATTTGTGGTAACTATCTCTGAAATCTTTTGTTTTTCTTCTTCATTTATGCATGTGATTCTATTGAAGTTTGGTCAAAAGAAGACAGGTGAGTCAATGAAACACCATAAATTTGTTGATGTAGATTTTAGTACAACCTTCCTGTGATGGTATGTGTAATGCAATGAGTACAAGTCATGTGCTAATTGTGCTGATTATTTGTTCTTCCTGCTTTATGTTTAGACAATTTAAGGTCTCTATTCTGTGTAAAGTCTGCAAACAGTGATTGAAACTTTAAAATCAGCATTTTCCAGACCAAAACTTTACAGACCATTTTGTTCCATGTGCCAAGTTTGTCTGCATTTTTTTTGACTTGTGTTTGAATCCACAGGTAATTTGAGAAACTTGGGGTTTTCATTTCATCTTTGAATTAAATTCTAGTTCCCTGTTCAATATATAATTGTAGATTGCTGTGATGGAAGTGATGAATATGATGGTAATATCTTTTGCCCGAACACGTGTGTCATGGGGGGAAATGCAGCGTACAAGAACAGTTATTATATTTCGACTTCTCGAGATGTGGATGTAATCAACAGAAAAGTAAAGGAGGAAATCACCAAGGAGGACTTGTTCCATAGGCTAATTGGTAGGATTTTTGTTTAAGTAATTACGAAACAGATTTCGAAGTACTCGACTGATTGTTGCAACTTATAATTCCAGGTTTGAAGCTAGTAATAATCCTACAGGTAGCTCTCACATGTTTTGCAGTCCTCATTTGGGCAAACCGATGTCGTGCGAAATCTAAGAGAAGACGACACCGCTGAAGCAAGCGTGGCTATCGTCATTCTGCTCTGCTTTAATCCTAAGTACGTCTCCCATTAGAGCATATGGCTTAGTGTTCAATATCCATTAGGTCTCCTGGCGTCTGTTATCAGCATGATTTCATGATCTTGTTTCTTTCAGGTACTCTCAAACCTCAACCCGCTGGATAAAGAACTCCTGCTCTACCTTCACCCTTCACCGCAGAGCCATGGTCCATTGGTTGGCTAGGGCTAAGCTATATTATATATAAAGATCCATCTTAAGCCAACTTAGCCATGACCTAAAACATCCTGCTTCCATCATAGCAGCACAATAACACAAAGGATTAGCAACTCTGTCTGCATCAATTTTGTTACAATTAGGTTAGTTGATTGACTCGTTAGTAAAGTTGATGGTTTCTTCCACTCGAACCAGGTTCGAATCCCCCCCCTGCAATGTACCATATCAAAAGAGAAACAATTCTGTTACAATGTTTGTCTTACATGACTTTCAATATCGCCCTGTCGAAGTTGCAGCCTTTGATTCGATATCGAACCAAATGAAAGTAGTGTAAAAGTAAAATCAGGGGTAGGTGAAAGAGATAGTAGCAAATCC

mRNA sequence

TAAAGAAAATTACATAAAATATAACTTAGGTAGTCAATAGTAGAATGAAGAGGAACTGCGCTCAGTTTGTGAAGTCTCCGAACTTTTGATCAATTTCAGCTCCTCCGATTGCCCTGAAGCTTATGATTTCGTTACCGCAGGCAAAATTTTGACAGAAATGGAAGCAGGTCATTCTCCAAAGTCCATGAGCTTCGTTTTGCTGCTTTCATTCTGTTTCTTCTTCGCTTCTGTTCGCTCTGTTCCATCACTTATCGGAGTGCACCCCCTTGATGAGAAATATTATTCATCGGAGGTCATAAAATGCAAGGATGGGTCTCGATCTTTTACTATTGATCGTCTCAACGACGATTTCTGTGACTGCGTTGATGGGACCGATGAGCCTGGTGCTTTCTTAGTTCTTACTGGATTTTAATAATTAATGTTATGCCTTTCTAAGGATTTCCGATGCATAATTTGTTTCGAACATCTAATATCGATTTTCGAGTGGTTGAATTGATTGAGAAGTTCTGGTTTATGGAATGGAGAAGAAAATTTCTTACCGAAGACCTTCAATTTGAAATGGCTGTTGAAATTAGGTATTTAACTAAGACAACAATTAATAGCCATTGTAATCTGTCTTAAATGGGAACTTGGTAAAGTTTAATGTTCTATTGCATATCCTAGAAGATCATGACTTGTTTTTCTTTCTGAATTTTCACCGGCATGTTGAGAATTGGAATGTCGATACCGTATCTATTTTTTCCTGTATCATTAGAAAGTAGGATAGGTTCTGCATTAGAATGATACTGAACTTATAAGCAATAAATCCGAATTCCGGGATGGCCAATTGTTCATGTGAACAAAAGGAAAACAAACCTTTCCCAATAGGCAAGAAGAGACCACACTCACACAAATACTGTGCAAGGATCAGCCAATTGTCTCATGGATTTGACATTTGCAGGAACTTCTGCCTGTGCAAGAGGGAAGTTCTATTGCAGGAACATGGGAAGTACACCACGGTTCCTATTTTCTTCCCGCGTCAACGATCATATTTGTGATTGCTGTGATGGAAGTGATGAATATGATGGTAATATCTTTTGCCCGAACACGTGTGTCATGGGGGGAAATGCAGCGTACAAGAACAGTTATTATATTTCGACTTCTCGAGATGTGGATGTAATCAACAGAAAAGTAAAGGAGGAAATCACCAAGGAGGACTTGTTCCATAGGCTAATTGGTTTGAAGCTAGTAATAATCCTACAGGTAGCTCTCACATGTTTTGCAGTCCTCATTTGGGCAAACCGATGTCGTGCGAAATCTAAGAGAAGACGACACCGCTGAAGCAAGCGTGGCTATCGTCATTCTGCTCTGCTTTAATCCTAAGTACTCTCAAACCTCAACCCGCTGGATAAAGAACTCCTGCTCTACCTTCACCCTTCACCGCAGAGCCATGGTCCATTGGTTGGCTAGGGCTAAGCTATATTATATATAAAGATCCATCTTAAGCCAACTTAGCCATGACCTAAAACATCCTGCTTCCATCATAGCAGCACAATAACACAAAGGATTAGCAACTCTGTCTGCATCAATTTTGTTACAATTAGGTTAGTTGATTGACTCGTTAGTAAAGTTGATGGTTTCTTCCACTCGAACCAGGTTCGAATCCCCCCCCTGCAATGTACCATATCAAAAGAGAAACAATTCTGTTACAATGTTTGTCTTACATGACTTTCAATATCGCCCTGTCGAAGTTGCAGCCTTTGATTCGATATCGAACCAAATGAAAGTAGTGTAAAAGTAAAATCAGGGGTAGGTGAAAGAGATAGTAGCAAATCC

Coding sequence (CDS)

ATGGATTTGACATTTGCAGGAACTTCTGCCTGTGCAAGAGGGAAGTTCTATTGCAGGAACATGGGAAGTACACCACGGTTCCTATTTTCTTCCCGCGTCAACGATCATATTTGTGATTGCTGTGATGGAAGTGATGAATATGATGGTAATATCTTTTGCCCGAACACGTGTGTCATGGGGGGAAATGCAGCGTACAAGAACAGTTATTATATTTCGACTTCTCGAGATGTGGATGTAATCAACAGAAAAGTAAAGGAGGAAATCACCAAGGAGGACTTGTTCCATAGGCTAATTGGTTTGAAGCTAGTAATAATCCTACAGGTAGCTCTCACATGTTTTGCAGTCCTCATTTGGGCAAACCGATGTCGTGCGAAATCTAAGAGAAGACGACACCGCTGA

Protein sequence

MDLTFAGTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYKNSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKSKRRRHR

Homology

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BLAST of Carg04182-RA vs. NCBI nr
Match: XP_008455476.1 (PREDICTED: glucosidase 2 subunit beta isoform X2 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 3.5e-55
Identity = 107/126 (84.92%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRF+FSSRVNDHICDCCDGSDEY+GNIFCPNTCVMGGN  YK
Sbjct: 37  GTSACARGKFYCRNMGSTPRFIFSSRVNDHICDCCDGSDEYEGNIFCPNTCVMGGN-MYK 96

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           ++  +ST+RDVD++ RKVKEEITKEDLF +L GLKLVIILQVALT FA+LIWANRCR KS
Sbjct: 97  SNNDVSTTRDVDIVIRKVKEEITKEDLFQKLTGLKLVIILQVALTIFAILIWANRCRVKS 156

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 157 KRRRHR 161

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BLAST of Carg04182-RA vs. NCBI nr
Match: XP_022952390.1 (glucosidase 2 subunit beta [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 3.6e-52
Identity = 108/126 (85.71%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRFLF                  DGNIFCPNTCVMGGNAAYK
Sbjct: 76  GTSACARGKFYCRNMGSTPRFLFXXXXXXXXXXXXXXXXXXDGNIFCPNTCVMGGNAAYK 135

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS
Sbjct: 136 NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 195

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 196 KRRRHR 201

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BLAST of Carg04182-RA vs. NCBI nr
Match: XP_023554618.1 (glucosidase 2 subunit beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 107/126 (84.92%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRFLF                  DGNIFCPNTCVMGGNAAYK
Sbjct: 76  GTSACARGKFYCRNMGSTPRFLFXXXXXXXXXXXXXXXXXXDGNIFCPNTCVMGGNAAYK 135

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRC+AKS
Sbjct: 136 NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCQAKS 195

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 196 KRRRHR 201

[Close]

BLAST of Carg04182-RA vs. NCBI nr
Match: XP_022969237.1 (glucosidase 2 subunit beta [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 102/124 (82.26%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRFLF                  DGNIFCPNTCVMGGNAAYK
Sbjct: 114 GTSACARGKFYCRNMGSTPRFLFXXXXXXXXXXXXXXXXXXDGNIFCPNTCVMGGNAAYK 173

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVAL  FAV+IWANRCR KS
Sbjct: 174 NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALISFAVIIWANRCRVKS 233

Query: 127 KRRR 131
           KRRR
Sbjct: 234 KRRR 237

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BLAST of Carg04182-RA vs. NCBI nr
Match: XP_022136263.1 (glucosidase 2 subunit beta [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 4.7e-44
Identity = 91/126 (72.22%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTP+F+FSS                DGNIFCPNTCVMGGN AYK
Sbjct: 76  GTSACARGKFYCRNMGSTPQFIFSSXXXXXXXXXXXXXXXXDGNIFCPNTCVMGGNIAYK 135

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           ++ YIST++DV ++NRKVKEEITKEDLF +L+GLKLVI+LQVALT FAV IW NRCRA+S
Sbjct: 136 SNNYISTTQDVHIVNRKVKEEITKEDLFQKLMGLKLVIVLQVALTSFAVFIWVNRCRARS 195

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 196 KRRRHR 201

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BLAST of Carg04182-RA vs. TAIR10
Match: AT2G42390.1 (protein kinase C substrate, heavy chain-related)

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-16
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSAC  GKFYCRN+GS+P+F+                     +I CPNTC+MGGN    
Sbjct: 70  GTSACPNGKFYCRNIGSSPKFVXXXXXXXXXXXXXXXXXXXXXSIHCPNTCIMGGNV--- 129

Query: 67  NSYYISTSRDVDVINRKV------KEEIT---KEDLFHRLIGLKLVIILQVALTCFAVLI 126
            +Y      ++  I+ ++      KE  T    +D+   L G+KLV  LQ+    F V++
Sbjct: 130 -NYIYKPRANLKSIHLQLGSTPHPKEFYTIGNLQDMVKNLQGMKLVFALQMVFIGFLVIL 189

Query: 127 WANRCRAKSKRRRH 132
           W  R RA+SKRRR+
Sbjct: 190 WMLRSRARSKRRRY 199

[Close]

BLAST of Carg04182-RA vs. TAIR10
Match: AT5G56360.1 (calmodulin-binding protein)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-09
Identity = 28/61 (45.90%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSAC  GKFYCRN G +P  LFS                YDG++ C NTC   G AA +
Sbjct: 83  GTSACPTGKFYCRNAGHSPVILFSXXXXXXXXXXXXXXXXYDGHVSCQNTCWEAGKAARE 142

Query: 67  N 68
           N
Sbjct: 143 N 143

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BLAST of Carg04182-RA vs. Swiss-Prot
Match: sp|P0CT24|GLU2B_USTMA (Glucosidase 2 subunit beta OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=UMAG_12045 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-13
Identity = 47/107 (43.93%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICD--CCDGSDEYDGNIFCPNTCVMGGNAA 66
           GTSAC    FYC N G  P ++ SSRV+D ICD  CCDGSDE DG I CPN C   G   
Sbjct: 80  GTSACPNSSFYCHNTGHMPAYIRSSRVDDGICDPECCDGSDESDGKIRCPNRCEKVGKEY 139

Query: 67  YKNSYYISTSR--DVDVINRKVKEEITKEDLFHRLIGLKLVIILQVA 110
            K    +   R     V ++ + E   +++L H  I  KL I +QVA
Sbjct: 140 RKKLAELDNLRRAGAKVRDKYIAEGRKQKELLHAEIA-KLEIEVQVA 185

[Close]

BLAST of Carg04182-RA vs. Swiss-Prot
Match: sp|Q9FM96|PSL4_ARATH (Glucosidase 2 subunit beta OS=Arabidopsis thaliana OX=3702 GN=PSL4 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 28/61 (45.90%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSAC  GKFYCRN G +P  LFS                YDG++ C NTC   G AA +
Sbjct: 83  GTSACPTGKFYCRNAGHSPVILFSXXXXXXXXXXXXXXXXYDGHVSCQNTCWEAGKAARE 142

Query: 67  N 68
           N
Sbjct: 143 N 143

[Close]

BLAST of Carg04182-RA vs. Swiss-Prot
Match: sp|A2WNF5|GLU2B_ORYSI (Glucosidase 2 subunit beta OS=Oryza sativa subsp. indica OX=39946 GN=OsI_01383 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04
Identity = 23/58 (39.66%), Postives = 27/58 (46.55%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAA 65
           GTSAC  GKFYC+N G +P  +FS                   N+ C NTC   G AA
Sbjct: 72  GTSACPEGKFYCQNAGHSPITIFSXXXXXXXXXXXXXXXXXXXNVTCKNTCWEAGKAA 129

[Close]

BLAST of Carg04182-RA vs. Swiss-Prot
Match: sp|Q5NBP9|GLU2B_ORYSJ (Glucosidase 2 subunit beta OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0276800 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04
Identity = 23/58 (39.66%), Postives = 27/58 (46.55%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAA 65
           GTSAC  GKFYC+N G +P  +FS                   N+ C NTC   G AA
Sbjct: 72  GTSACPEGKFYCQNAGHSPITIFSXXXXXXXXXXXXXXXXXXXNVTCKNTCWEAGKAA 129

[Close]

BLAST of Carg04182-RA vs. Swiss-Prot
Match: sp|Q04924|GLU2B_YEAST (Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GTB1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04
Identity = 19/31 (61.29%), Postives = 21/31 (67.74%), Query Frame = 0


Query: 16  FYCRNMGSTPRFLFSSRVNDHICDCCDGSDE 47
           FYC N G  PR++  S V D ICDCCD SDE
Sbjct: 102 FYCDNKGFIPRYIRKSEVADGICDCCDCSDE 132

[Close]

BLAST of Carg04182-RA vs. TrEMBL
Match: tr|A0A1S3C149|A0A1S3C149_CUCME (glucosidase 2 subunit beta isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495629 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 107/126 (84.92%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRF+FSSRVNDHICDCCDGSDEY+GNIFCPNTCVMGGN  YK
Sbjct: 37  GTSACARGKFYCRNMGSTPRFIFSSRVNDHICDCCDGSDEYEGNIFCPNTCVMGGN-MYK 96

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           ++  +ST+RDVD++ RKVKEEITKEDLF +L GLKLVIILQVALT FA+LIWANRCR KS
Sbjct: 97  SNNDVSTTRDVDIVIRKVKEEITKEDLFQKLTGLKLVIILQVALTIFAILIWANRCRVKS 156

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 157 KRRRHR 161

[Close]

BLAST of Carg04182-RA vs. TrEMBL
Match: tr|A0A1S4E0C8|A0A1S4E0C8_CUCME (glucosidase 2 subunit beta isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495629 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRF+F                 Y+GNIFCPNTCVMGGN  YK
Sbjct: 75  GTSACARGKFYCRNMGSTPRFIFXXXXXXXXXXXXXXXXXYEGNIFCPNTCVMGGN-MYK 134

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           ++  +ST+RDVD++ RKVKEEITKEDLF +L GLKLVIILQVALT FA+LIWANRCR KS
Sbjct: 135 SNNDVSTTRDVDIVIRKVKEEITKEDLFQKLTGLKLVIILQVALTIFAILIWANRCRVKS 194

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 195 KRRRHR 199

[Close]

BLAST of Carg04182-RA vs. TrEMBL
Match: tr|A0A0A0K1G3|A0A0A0K1G3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041350 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 91/126 (72.22%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSACARGKFYCRNMGSTPRF+F                 Y+GNIFCPNTCVMGGN  YK
Sbjct: 75  GTSACARGKFYCRNMGSTPRFIFXXXXXXXXXXXXXXXXXYEGNIFCPNTCVMGGN-MYK 134

Query: 67  NSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAKS 126
           +   IST+RDVD++ RKVKEEITKEDLF +L GLKLVIILQVALT FA+LIWANRCR KS
Sbjct: 135 SKNDISTTRDVDIVIRKVKEEITKEDLFQKLTGLKLVIILQVALTSFAILIWANRCRVKS 194

Query: 127 KRRRHR 133
           KRRRHR
Sbjct: 195 KRRRHR 199

[Close]

BLAST of Carg04182-RA vs. TrEMBL
Match: tr|A0A2U1PJZ4|A0A2U1PJZ4_ARTAN (Protein kinase C substrate, heavy chain-related protein OS=Artemisia annua OX=35608 GN=CTI12_AA144370 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 7   GTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAYK 66
           GTSAC  GKFYCRN GS+PRFLFSSRVND ICDCCDGSDEYDG+I CPNTCVMGG+  Y+
Sbjct: 27  GTSACPTGKFYCRNAGSSPRFLFSSRVNDQICDCCDGSDEYDGSIICPNTCVMGGHTEYR 86

Query: 67  NSYYISTSRDVDVINRKVKE-EITKEDLFHRLIGLKLVIILQVALTCFAVLIWANRCRAK 126
              Y S       +  K K+  +  ED   ++ GLK+VII+QV+L  F V +   R RAK
Sbjct: 87  RVNYGSKVNKFGSVGTKQKKIPLNGEDTVQKIQGLKVVIIVQVSLIAFVVFLCLCRRRAK 146

Query: 127 SKRRRHR 133
           S+RR  R
Sbjct: 147 SRRRNSR 153

[Close]

BLAST of Carg04182-RA vs. TrEMBL
Match: tr|A0A2K1WRW8|A0A2K1WRW8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G092100v3 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 6   AGTSACARGKFYCRNMGSTPRFLFSSRVNDHICDCCDGSDEYDGNIFCPNTCVMGGNAAY 65
           AGTSAC  GKFYCRN GSTP+F+FSSRVND ICDCCDGSDEY   I CPNTCVMGG+  Y
Sbjct: 25  AGTSACPSGKFYCRNAGSTPKFIFSSRVNDQICDCCDGSDEYGSGINCPNTCVMGGDLEY 84

Query: 66  KNSYYISTSRDVDVINRKVKEEITKEDLFHRLIGLKLVIILQ 108
           K   YIS    +D+  ++ K  +  E+LF +  GLK++IILQ
Sbjct: 85  KAGNYIS---HIDM--KESKRGLILEELFQKARGLKVIIILQ 121

The following BLAST results are available for this feature:

BLAST of Carg04182-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455476.1	3.5e-55	84.92	PREDICTED: glucosidase 2 subunit beta isoform X2 [Cucumis melo]	[more]
XP_022952390.1	3.6e-52	85.71	glucosidase 2 subunit beta [Cucurbita moschata]	[more]
XP_023554618.1	1.0e-51	84.92	glucosidase 2 subunit beta [Cucurbita pepo subsp. pepo]	[more]
XP_022969237.1	3.2e-48	82.26	glucosidase 2 subunit beta [Cucurbita maxima]	[more]
XP_022136263.1	4.7e-44	72.22	glucosidase 2 subunit beta [Momordica charantia]	[more]

BLAST of Carg04182-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42390.1	8.6e-16	37.31	protein kinase C substrate, heavy chain-related	[more]
AT5G56360.1	6.0e-09	45.90	calmodulin-binding protein	[more]

BLAST of Carg04182-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CT24\|GLU2B_USTMA	2.2e-13	43.93	Glucosidase 2 subunit beta OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631...	[more]
sp\|Q9FM96\|PSL4_ARATH	1.1e-07	45.90	Glucosidase 2 subunit beta OS=Arabidopsis thaliana OX=3702 GN=PSL4 PE=2 SV=1	[more]
sp\|A2WNF5\|GLU2B_ORYSI	1.9e-04	39.66	Glucosidase 2 subunit beta OS=Oryza sativa subsp. indica OX=39946 GN=OsI_01383 P...	[more]
sp\|Q5NBP9\|GLU2B_ORYSJ	1.9e-04	39.66	Glucosidase 2 subunit beta OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0276...	[more]
sp\|Q04924\|GLU2B_YEAST	4.2e-04	61.29	Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	[more]

BLAST of Carg04182-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C149\|A0A1S3C149_CUCME	2.3e-55	84.92	glucosidase 2 subunit beta isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495629 PE...	[more]
tr\|A0A1S4E0C8\|A0A1S4E0C8_CUCME	1.1e-41	71.43	glucosidase 2 subunit beta isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495629 PE...	[more]
tr\|A0A0A0K1G3\|A0A0A0K1G3_CUCSA	1.1e-41	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041350 PE=4 SV=1	[more]
tr\|A0A2U1PJZ4\|A0A2U1PJZ4_ARTAN	1.4e-31	58.27	Protein kinase C substrate, heavy chain-related protein OS=Artemisia annua OX=35...	[more]
tr\|A0A2K1WRW8\|A0A2K1WRW8_POPTR	2.2e-26	61.76	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G092100v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006491	N-glycan processing

Vocabulary: **INTERPRO**
Term	Definition
IPR026874	Glucosidase_2_bsu
IPR028146	PRKCSH_N

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006491	N-glycan processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04182	Carg04182	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04182-RA	Carg04182-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04182-RA.exon.1	Carg04182-RA.exon.1	exon
Carg04182-RA.exon.2	Carg04182-RA.exon.2	exon
Carg04182-RA.exon.3	Carg04182-RA.exon.3	exon
Carg04182-RA.exon.4	Carg04182-RA.exon.4	exon
Carg04182-RA.exon.5	Carg04182-RA.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04182-RA.five_prime_UTR.1	Carg04182-RA.five_prime_UTR.1	five_prime_UTR
Carg04182-RA.five_prime_UTR.2	Carg04182-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04182-RA.CDS.1	Carg04182-RA.CDS.1	CDS
Carg04182-RA.CDS.2	Carg04182-RA.CDS.2	CDS
Carg04182-RA.CDS.3	Carg04182-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04182-RA.three_prime_UTR.1	Carg04182-RA.three_prime_UTR.1	three_prime_UTR
Carg04182-RA.three_prime_UTR.2	Carg04182-RA.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028146	Glucosidase II beta subunit, N-terminal	PFAM	PF12999	PRKCSH-like	coord: 7..60 e-value: 1.9E-17 score: 63.6
None	No IPR available	PANTHER	PTHR12630	N-LINKED OLIGOSACCHARIDE PROCESSING	coord: 7..65
IPR026874	Glucosidase 2 subunit beta	PANTHER	PTHR12630:SF10	GLUCOSIDASE 2 SUBUNIT BETA	coord: 7..65