Carg04171-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04171-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand family protein
Location	Cucurbita_argyrosperma_scaffold_044 : 558640 .. 559053 (+)
Sequence length	414

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

mRNA sequence

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

Coding sequence (CDS)

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

Protein sequence

MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSLLMKAVERETGVMAT

Homology

[Close]

BLAST of Carg04171-RA vs. NCBI nr
Match: XP_022952573.1 (uncharacterized protein LOC111455224 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 6.3e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GSLLMKAVERETGVMAT
Sbjct: 121 GSLLMKAVERETGVMAT 137

[Close]

BLAST of Carg04171-RA vs. NCBI nr
Match: XP_023554640.1 (uncharacterized protein LOC111811830 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 3.1e-67
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GSLLMKAVERET VMAT
Sbjct: 121 GSLLMKAVERETAVMAT 137

[Close]

BLAST of Carg04171-RA vs. NCBI nr
Match: XP_022969294.1 (uncharacterized protein LOC111468343 [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 8.6e-65
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEML ELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLAELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEF+TETKRMMLGMANGMGFLPVQM+LEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFRTETKRMMLGMANGMGFLPVQMLLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GS LMKAVE ET VMAT
Sbjct: 121 GSFLMKAVEHETAVMAT 137

[Close]

BLAST of Carg04171-RA vs. NCBI nr
Match: XP_008449396.1 (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 6.8e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTNHDGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DP+E+SSVYS+LFLQFD D +GTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171-RA vs. NCBI nr
Match: XP_011657544.1 (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hypothetical protein Csa_6G418660 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 8.9e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTN DGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DPDE+SSVYS+LFLQFDRD +GTVDLDEF+ ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171-RA vs. TAIR10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-25
Identity = 54/133 (40.60%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           M V ++D  T+ +FV+DE  F   + ERFA LD N DG+LS SE+ +  +S+R+ ++ F 
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVL-- 120
           +DV    DE++++Y ++F +FD D +G+VDL+EF++E K+++L +A+G+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSLLMKAVERE 132
           ++ + L KA + E
Sbjct: 121 DDDNFLKKAADLE 133

[Close]

BLAST of Carg04171-RA vs. TAIR10
Match: AT1G54530.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 5   ILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDVK 64
           ++ S+T++ F+ D  +F +   + F  LD + +G+LS SE+ + L ++   +++      
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEV----- 64

Query: 65  LDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSLL 124
              DE  +VY+A+F +F  DL        F+     ++  MA G+G  PV MV+    L+
Sbjct: 65  APGDETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 MKAVERET 133
           MKAV  E+
Sbjct: 125 MKAVLHES 123

[Close]

BLAST of Carg04171-RA vs. TAIR10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.5e-07
Identity = 35/125 (28.00%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 4   EILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDV 63
           ++LD   IV  VE+E  F  F+ ++F  LD + DG LS +E+   +  +           
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGT 72

Query: 64  KLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSL 123
             D D    +YS +  +F       V   EFK     ++LGMA G+   P+ ++  +G  
Sbjct: 73  SPDSDH---IYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGED 132

Query: 124 LMKAV 129
           L + V
Sbjct: 133 LSEFV 134

[Close]

BLAST of Carg04171-RA vs. TrEMBL
Match: tr|A0A1S3BLY5|A0A1S3BLY5_CUCME (uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTNHDGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DP+E+SSVYS+LFLQFD D +GTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171-RA vs. TrEMBL
Match: tr|A0A0A0KHT7|A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.9e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTN DGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DPDE+SSVYS+LFLQFDRD +GTVDLDEF+ ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171-RA vs. TrEMBL
Match: tr|A0A1S3C175|A0A1S3C175_CUCME (uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.2e-53
Identity = 111/136 (81.62%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVEDEAAF A+IR+RF HLDTNHDGLLSY+EMLEELQSLRV + DF 
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
            D KLDPDE+SSVYS+LFLQFDRD +G VDLD +KTE KRMML MANG+GFLPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET +MA
Sbjct: 121 GSFLMKAVERETAIMA 136

[Close]

BLAST of Carg04171-RA vs. TrEMBL
Match: tr|A0A0A0K3B2|A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.1e-51
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILD  TIVNFVEDEAAF A+IR +FAHLDT+HDGLLSY+EMLEELQSLRV   DF 
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
            D KL PDE+SSVYS+LFLQFDRD +G VDLD +KTE KRMML MANG+GFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET +MA
Sbjct: 121 GSFLMKAVERETAIMA 136

[Close]

BLAST of Carg04171-RA vs. TrEMBL
Match: tr|A0A1U8PC80|A0A1U8PC80_GOSHI (uncharacterized protein LOC107956905 OS=Gossypium hirsutum OX=3635 GN=LOC107956905 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVE+LDS TIVNFVEDE AF   IRERFAHLDTNHDGLLSY+E+ ++LQSLRV +  F 
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNISIRERFAHLDTNHDGLLSYTELSKDLQSLRVLETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           ID+K DP E++ VY +LF QFD D NGTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDIKTDPKELAHVYESLFEQFDHDSNGTVDLDEFKLETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERET 133
           GSLL  AVE E+
Sbjct: 121 GSLLKIAVEHES 132

The following BLAST results are available for this feature:

BLAST of Carg04171-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952573.1	6.3e-68	100.00	uncharacterized protein LOC111455224 [Cucurbita moschata]	[more]
XP_023554640.1	3.1e-67	99.27	uncharacterized protein LOC111811830 [Cucurbita pepo subsp. pepo]	[more]
XP_022969294.1	8.6e-65	95.62	uncharacterized protein LOC111468343 [Cucurbita maxima]	[more]
XP_008449396.1	6.8e-54	82.35	PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo]	[more]
XP_011657544.1	8.9e-54	82.35	PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hy...	[more]

BLAST of Carg04171-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44310.1	6.2e-25	40.60	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	5.6e-10	29.69	Calcium-binding EF hand family protein	[more]
AT4G38810.2	4.5e-07	28.00	Calcium-binding EF-hand family protein	[more]

BLAST of Carg04171-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04171-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLY5\|A0A1S3BLY5_CUCME	4.5e-54	82.35	uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=...	[more]
tr\|A0A0A0KHT7\|A0A0A0KHT7_CUCSA	5.9e-54	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1	[more]
tr\|A0A1S3C175\|A0A1S3C175_CUCME	2.2e-53	81.62	uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=...	[more]
tr\|A0A0A0K3B2\|A0A0A0K3B2_CUCSA	6.1e-51	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1	[more]
tr\|A0A1U8PC80\|A0A1U8PC80_GOSHI	1.6e-46	75.00	uncharacterized protein LOC107956905 OS=Gossypium hirsutum OX=3635 GN=LOC1079569...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04171	Carg04171	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04171-RA.exon.1	Carg04171-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04171-RA.CDS.1	Carg04171-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04171-RA	Carg04171-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 73..101 e-value: 10.0 score: 9.7 coord: 24..52 e-value: 0.33 score: 20.0
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 25..96 e-value: 5.5E-10 score: 39.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 9.325
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.102
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 5..107 e-value: 2.4E-12 score: 49.3
None	No IPR available	PANTHER	PTHR44089:SF4	SUBFAMILY NOT NAMED	coord: 1..134
None	No IPR available	PANTHER	PTHR44089	FAMILY NOT NAMED	coord: 1..134
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 24..96