Carg04171 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04171
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand family protein
Location	Cucurbita_argyrosperma_scaffold_044 : 558640 .. 559053 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

mRNA sequence

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

Coding sequence (CDS)

ATGAGTGTGGAAATATTGGACAGTGAAACCATCGTCAACTTTGTTGAAGACGAGGCAGCCTTTGGTGCCTTCATTAGAGAACGCTTTGCTCACCTTGACACCAACCATGATGGCCTCCTTTCTTATAGCGAGATGCTAGAGGAGTTGCAGAGCCTGAGGGTGACACAGAACGACTTTGAAATTGACGTGAAGCTTGACCCAGATGAGGTTTCTTCTGTTTATAGTGCTCTGTTCTTGCAGTTTGATCGTGACTTGAATGGGACAGTTGATCTGGATGAGTTCAAGACTGAGACCAAAAGGATGATGCTTGGGATGGCTAATGGGATGGGGTTCTTGCCTGTTCAGATGGTGCTGGAAGAGGGCAGCTTGTTGATGAAGGCTGTTGAGCGTGAAACTGGTGTAATGGCCACTTGA

Protein sequence

MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSLLMKAVERETGVMAT

Homology

[Close]

BLAST of Carg04171 vs. NCBI nr
Match: XP_022952573.1 (uncharacterized protein LOC111455224 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 6.3e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GSLLMKAVERETGVMAT
Sbjct: 121 GSLLMKAVERETGVMAT 137

[Close]

BLAST of Carg04171 vs. NCBI nr
Match: XP_023554640.1 (uncharacterized protein LOC111811830 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 3.1e-67
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GSLLMKAVERET VMAT
Sbjct: 121 GSLLMKAVERETAVMAT 137

[Close]

BLAST of Carg04171 vs. NCBI nr
Match: XP_022969294.1 (uncharacterized protein LOC111468343 [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 8.6e-65
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEML ELQSLRVTQNDFE
Sbjct: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLAELQSLRVTQNDFE 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEF+TETKRMMLGMANGMGFLPVQM+LEE
Sbjct: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFRTETKRMMLGMANGMGFLPVQMLLEE 120

Query: 121 GSLLMKAVERETGVMAT 138
           GS LMKAVE ET VMAT
Sbjct: 121 GSFLMKAVEHETAVMAT 137

[Close]

BLAST of Carg04171 vs. NCBI nr
Match: XP_008449396.1 (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 6.8e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTNHDGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DP+E+SSVYS+LFLQFD D +GTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171 vs. NCBI nr
Match: XP_011657544.1 (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hypothetical protein Csa_6G418660 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 8.9e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTN DGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DPDE+SSVYS+LFLQFDRD +GTVDLDEF+ ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171 vs. TAIR10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-25
Identity = 54/133 (40.60%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           M V ++D  T+ +FV+DE  F   + ERFA LD N DG+LS SE+ +  +S+R+ ++ F 
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVL-- 120
           +DV    DE++++Y ++F +FD D +G+VDL+EF++E K+++L +A+G+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSLLMKAVERE 132
           ++ + L KA + E
Sbjct: 121 DDDNFLKKAADLE 133

[Close]

BLAST of Carg04171 vs. TAIR10
Match: AT1G54530.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 5   ILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDVK 64
           ++ S+T++ F+ D  +F +   + F  LD + +G+LS SE+ + L ++   +++      
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEV----- 64

Query: 65  LDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSLL 124
              DE  +VY+A+F +F  DL        F+     ++  MA G+G  PV MV+    L+
Sbjct: 65  APGDETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 MKAVERET 133
           MKAV  E+
Sbjct: 125 MKAVLHES 123

[Close]

BLAST of Carg04171 vs. TAIR10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.5e-07
Identity = 35/125 (28.00%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 4   EILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFEIDV 63
           ++LD   IV  VE+E  F  F+ ++F  LD + DG LS +E+   +  +           
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGT 72

Query: 64  KLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEEGSL 123
             D D    +YS +  +F       V   EFK     ++LGMA G+   P+ ++  +G  
Sbjct: 73  SPDSDH---IYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGED 132

Query: 124 LMKAV 129
           L + V
Sbjct: 133 LSEFV 134

[Close]

BLAST of Carg04171 vs. TrEMBL
Match: tr|A0A1S3BLY5|A0A1S3BLY5_CUCME (uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTNHDGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DP+E+SSVYS+LFLQFD D +GTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171 vs. TrEMBL
Match: tr|A0A0A0KHT7|A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.9e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVED+ AFGAFIR+RFAHLDTN DGLLSYSEMLEEL +LRV +  F 
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           IDVK DPDE+SSVYS+LFLQFDRD +GTVDLDEF+ ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET + A
Sbjct: 121 GSFLMKAVERETAITA 136

[Close]

BLAST of Carg04171 vs. TrEMBL
Match: tr|A0A1S3C175|A0A1S3C175_CUCME (uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.2e-53
Identity = 111/136 (81.62%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILDS TIVNFVEDEAAF A+IR+RF HLDTNHDGLLSY+EMLEELQSLRV + DF 
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
            D KLDPDE+SSVYS+LFLQFDRD +G VDLD +KTE KRMML MANG+GFLPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET +MA
Sbjct: 121 GSFLMKAVERETAIMA 136

[Close]

BLAST of Carg04171 vs. TrEMBL
Match: tr|A0A0A0K3B2|A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.1e-51
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVEILD  TIVNFVEDEAAF A+IR +FAHLDT+HDGLLSY+EMLEELQSLRV   DF 
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
            D KL PDE+SSVYS+LFLQFDRD +G VDLD +KTE KRMML MANG+GFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSLLMKAVERETGVMA 137
           GS LMKAVERET +MA
Sbjct: 121 GSFLMKAVERETAIMA 136

[Close]

BLAST of Carg04171 vs. TrEMBL
Match: tr|A0A1U8PC80|A0A1U8PC80_GOSHI (uncharacterized protein LOC107956905 OS=Gossypium hirsutum OX=3635 GN=LOC107956905 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 1   MSVEILDSETIVNFVEDEAAFGAFIRERFAHLDTNHDGLLSYSEMLEELQSLRVTQNDFE 60
           MSVE+LDS TIVNFVEDE AF   IRERFAHLDTNHDGLLSY+E+ ++LQSLRV +  F 
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNISIRERFAHLDTNHDGLLSYTELSKDLQSLRVLETHFG 60

Query: 61  IDVKLDPDEVSSVYSALFLQFDRDLNGTVDLDEFKTETKRMMLGMANGMGFLPVQMVLEE 120
           ID+K DP E++ VY +LF QFD D NGTVDLDEFK ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDIKTDPKELAHVYESLFEQFDHDSNGTVDLDEFKLETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSLLMKAVERET 133
           GSLL  AVE E+
Sbjct: 121 GSLLKIAVEHES 132

The following BLAST results are available for this feature:

BLAST of Carg04171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952573.1	6.3e-68	100.00	uncharacterized protein LOC111455224 [Cucurbita moschata]	[more]
XP_023554640.1	3.1e-67	99.27	uncharacterized protein LOC111811830 [Cucurbita pepo subsp. pepo]	[more]
XP_022969294.1	8.6e-65	95.62	uncharacterized protein LOC111468343 [Cucurbita maxima]	[more]
XP_008449396.1	6.8e-54	82.35	PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo]	[more]
XP_011657544.1	8.9e-54	82.35	PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hy...	[more]

BLAST of Carg04171 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44310.1	6.2e-25	40.60	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	5.6e-10	29.69	Calcium-binding EF hand family protein	[more]
AT4G38810.2	4.5e-07	28.00	Calcium-binding EF-hand family protein	[more]

BLAST of Carg04171 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04171 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLY5\|A0A1S3BLY5_CUCME	4.5e-54	82.35	uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=...	[more]
tr\|A0A0A0KHT7\|A0A0A0KHT7_CUCSA	5.9e-54	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1	[more]
tr\|A0A1S3C175\|A0A1S3C175_CUCME	2.2e-53	81.62	uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=...	[more]
tr\|A0A0A0K3B2\|A0A0A0K3B2_CUCSA	6.1e-51	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1	[more]
tr\|A0A1U8PC80\|A0A1U8PC80_GOSHI	1.6e-46	75.00	uncharacterized protein LOC107956905 OS=Gossypium hirsutum OX=3635 GN=LOC1079569...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04171-RA	Carg04171-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 73..101 e-value: 10.0 score: 9.7 coord: 24..52 e-value: 0.33 score: 20.0
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 25..96 e-value: 5.5E-10 score: 39.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 9.325
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.102
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 5..107 e-value: 2.4E-12 score: 49.3
None	No IPR available	PANTHER	PTHR44089:SF4	SUBFAMILY NOT NAMED	coord: 1..134
None	No IPR available	PANTHER	PTHR44089	FAMILY NOT NAMED	coord: 1..134
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 24..96

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04171	Wax gourd	carwgoB0244
Carg04171	Wax gourd	carwgoB0251
Carg04171	Wax gourd	carwgoB0252
Carg04171	Silver-seed gourd	carcarB232
Carg04171	Silver-seed gourd	carcarB235
Carg04171	Silver-seed gourd	carcarB236
Carg04171	Silver-seed gourd	carcarB242
Carg04171	Cucumber (Gy14) v2	carcgybB0209
Carg04171	Cucumber (Gy14) v2	carcgybB0217
Carg04171	Cucumber (Gy14) v1	carcgyB0242
Carg04171	Cucumber (Gy14) v1	carcgyB0243
Carg04171	Cucurbita maxima (Rimu)	carcmaB0271
Carg04171	Cucurbita maxima (Rimu)	carcmaB0275
Carg04171	Cucurbita maxima (Rimu)	carcmaB0279
Carg04171	Cucurbita moschata (Rifu)	carcmoB0276
Carg04171	Cucurbita moschata (Rifu)	carcmoB0282
Carg04171	Cucurbita moschata (Rifu)	carcmoB0286
Carg04171	Cucurbita moschata (Rifu)	carcmoB0287
Carg04171	Cucurbita pepo (Zucchini)	carcpeB0281
Carg04171	Cucurbita pepo (Zucchini)	carcpeB0282
Carg04171	Cucurbita pepo (Zucchini)	carcpeB0285
Carg04171	Cucurbita pepo (Zucchini)	carcpeB0286
Carg04171	Cucurbita pepo (Zucchini)	carcpeB0288
Carg04171	Wild cucumber (PI 183967)	carcpiB0227
Carg04171	Wild cucumber (PI 183967)	carcpiB0235
Carg04171	Cucumber (Chinese Long) v2	carcuB0228
Carg04171	Cucumber (Chinese Long) v3	carcucB0224
Carg04171	Cucumber (Chinese Long) v3	carcucB0232
Carg04171	Bottle gourd (USVL1VR-Ls)	carlsiB173
Carg04171	Bottle gourd (USVL1VR-Ls)	carlsiB174
Carg04171	Melon (DHL92) v3.5.1	carmeB0197
Carg04171	Melon (DHL92) v3.5.1	carmeB0199
Carg04171	Melon (DHL92) v3.5.1	carmeB0206
Carg04171	Melon (DHL92) v3.6.1	carmedB0202
Carg04171	Melon (DHL92) v3.6.1	carmedB0204
Carg04171	Melon (DHL92) v3.6.1	carmedB0211
Carg04171	Watermelon (Charleston Gray)	carwcgB0191
Carg04171	Watermelon (Charleston Gray)	carwcgB0193
Carg04171	Watermelon (Charleston Gray)	carwcgB0194
Carg04171	Watermelon (97103) v1	carwmB0188
Carg04171	Watermelon (97103) v1	carwmB0194
Carg04171	Watermelon (97103) v2	carwmbB0200
Carg04171	Watermelon (97103) v2	carwmbB0202