Carg04082-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CACGCCGTTCAGCTGCTTGGCGCATGAAAGTAATGTCTTGTTGAATTCATTGAAATGCAAATCAGAATTCCAAATTTCAATGTTTTTTTTTAGCTCATTTTGGTTGTTTTTTTTCTAGGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGGTGGGTTTTTGGTTAATTAATTGAAATAAGCAATTAATCACAAATTATTGCACTAATTTCAAATCTTTTTTGTGTTAATTCAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGGTAATTACAATTTTTTTCCCTTTTTTGATCTGAAAATTGCTCAAAATTTCAATGATTTAGGGTTTTTTTGATCAATTTTGGTGAAATAGATGCTTTGATTGTTGATGTTAATTTGCATACTCAGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGCTCTTGCATTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAAGAAACCCACGAATCAAATTTCGAATTTTTGCGTGTAATTCATACTATTTTGTATTCAACCGCTACAAGATCAACAATTCCACGAGCTCGAGCTTCTGTTGACATAAAAACGTCCCCTTTTTCATATCTTCAGATACAACCCATAAGAGTTTACTGAGGTCGGGTTTATAAGCTTAATTTTCAAAAACCATATATTATCAAACAGGGTCGATGTTATTTATTCTTGATTACCATAATTTGTTCCCGAAATTCAGCTCAATAATTCACAAATACACAAAACATTAAAAAAAAAAAGTATACAATTAGTGTGGTAAAGTAATGTAATTAGTGGGTTAATTAACGATTAATCAGGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGGTTCGTATACATATAATAAATACAACACGACATGTCTAAAAACAACCTTAAAGACACAAACTTTTCCCTCTATAACCAAAAATGGTTGGGTTTTTTTTTTTTTTTTTTTCTTTGGTTGGTTTGAAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA CACGCCGTTCAGCTGCTTGGCGCATGAAAGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA ATGAAAGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA MKGQPPKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQMNLFCSSMETNQEMTTRWSQHYNNNNNIGNNQQQQQQQQQLDRHKASIEISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC
BLAST of Carg04082-RA vs. NCBI nr
Match: XP_023538393.1 (probable transcription factor KAN4 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74 Identity = 168/173 (97.11%), Postives = 169/173 (97.69%), Query Frame = 0
BLAST of Carg04082-RA vs. NCBI nr
Match: XP_022951735.1 (probable transcription factor KAN4 isoform X2 [Cucurbita moschata]) HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74 Identity = 163/173 (94.22%), Postives = 164/173 (94.80%), Query Frame = 0
BLAST of Carg04082-RA vs. NCBI nr
Match: XP_022951736.1 (probable transcription factor KAN4 isoform X3 [Cucurbita moschata]) HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74 Identity = 161/173 (93.06%), Postives = 162/173 (93.64%), Query Frame = 0
BLAST of Carg04082-RA vs. NCBI nr
Match: XP_022951734.1 (probable transcription factor KAN4 isoform X1 [Cucurbita moschata]) HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74 Identity = 164/173 (94.80%), Postives = 165/173 (95.38%), Query Frame = 0
BLAST of Carg04082-RA vs. NCBI nr
Match: XP_023538394.1 (probable transcription factor KAN4 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73 Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Carg04082-RA vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein) HSP 1 Score: 57.8 bits (138), Expect = 8.1e-09 Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of Carg04082-RA vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Carg04082-RA vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08 Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0
BLAST of Carg04082-RA vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein) HSP 1 Score: 54.7 bits (130), Expect = 6.8e-08 Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0
BLAST of Carg04082-RA vs. TAIR10
Match: AT4G04580.1 (Homeodomain-like superfamily protein) HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04 Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0
BLAST of Carg04082-RA vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07 Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of Carg04082-RA vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07 Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0
BLAST of Carg04082-RA vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Carg04082-RA vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.2e-07 Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0
BLAST of Carg04082-RA vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06 Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0
BLAST of Carg04082-RA vs. TrEMBL
Match: tr|A0A0A0LP74|A0A0A0LP74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360740 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26 Identity = 87/183 (47.54%), Postives = 98/183 (53.55%), Query Frame = 0
BLAST of Carg04082-RA vs. TrEMBL
Match: tr|A0A1S3BAW6|A0A1S3BAW6_CUCME (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103487932 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25 Identity = 88/184 (47.83%), Postives = 99/184 (53.80%), Query Frame = 0
BLAST of Carg04082-RA vs. TrEMBL
Match: tr|A0A1U8HKR7|A0A1U8HKR7_GOSHI (probable transcription factor KAN4 OS=Gossypium hirsutum OX=3635 GN=LOC107887026 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10 Identity = 73/197 (37.06%), Postives = 93/197 (47.21%), Query Frame = 0
BLAST of Carg04082-RA vs. TrEMBL
Match: tr|A0A0B0NJ58|A0A0B0NJ58_GOSAR (Putative transcription factor KAN4-like protein OS=Gossypium arboreum OX=29729 GN=F383_11150 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 8.8e-10 Identity = 73/197 (37.06%), Postives = 92/197 (46.70%), Query Frame = 0
BLAST of Carg04082-RA vs. TrEMBL
Match: tr|A0A2K2BI44|A0A2K2BI44_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G130200v3 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09 Identity = 72/194 (37.11%), Postives = 89/194 (45.88%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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