Carg04082 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04082
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription repressor kan1
Location	Cucurbita_argyrosperma_scaffold_011 : 1755497 .. 1756894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGCCGTTCAGCTGCTTGGCGCATGAAAGTAATGTCTTGTTGAATTCATTGAAATGCAAATCAGAATTCCAAATTTCAATGTTTTTTTTTAGCTCATTTTGGTTGTTTTTTTTCTAGGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGGTGGGTTTTTGGTTAATTAATTGAAATAAGCAATTAATCACAAATTATTGCACTAATTTCAAATCTTTTTTGTGTTAATTCAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGGTAATTACAATTTTTTTCCCTTTTTTGATCTGAAAATTGCTCAAAATTTCAATGATTTAGGGTTTTTTTGATCAATTTTGGTGAAATAGATGCTTTGATTGTTGATGTTAATTTGCATACTCAGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGCTCTTGCATTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAAGAAACCCACGAATCAAATTTCGAATTTTTGCGTGTAATTCATACTATTTTGTATTCAACCGCTACAAGATCAACAATTCCACGAGCTCGAGCTTCTGTTGACATAAAAACGTCCCCTTTTTCATATCTTCAGATACAACCCATAAGAGTTTACTGAGGTCGGGTTTATAAGCTTAATTTTCAAAAACCATATATTATCAAACAGGGTCGATGTTATTTATTCTTGATTACCATAATTTGTTCCCGAAATTCAGCTCAATAATTCACAAATACACAAAACATTAAAAAAAAAAAGTATACAATTAGTGTGGTAAAGTAATGTAATTAGTGGGTTAATTAACGATTAATCAGGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGGTTCGTATACATATAATAAATACAACACGACATGTCTAAAAACAACCTTAAAGACACAAACTTTTCCCTCTATAACCAAAAATGGTTGGGTTTTTTTTTTTTTTTTTTTCTTTGGTTGGTTTGAAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA

mRNA sequence

CACGCCGTTCAGCTGCTTGGCGCATGAAAGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA

Coding sequence (CDS)

ATGAAAGGGCAACCACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGCTAAAGAGCCATTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCATGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACTTCCCCTTCTTAAATGCTAA

Protein sequence

MKGQPPKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQMNLFCSSMETNQEMTTRWSQHYNNNNNIGNNQQQQQQQQQLDRHKASIEISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC

Homology

[Close]

BLAST of Carg04082 vs. NCBI nr
Match: XP_023538393.1 (probable transcription factor KAN4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 168/173 (97.11%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD
Sbjct: 118 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 177

Query: 66  QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGMKKQRL 125
           QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSG+KKQRL
Sbjct: 178 QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGVKKQRL 237

Query: 126 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 179
           EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSE PLLKC
Sbjct: 238 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSEPPLLKC 290

[Close]

BLAST of Carg04082 vs. NCBI nr
Match: XP_022951735.1 (probable transcription factor KAN4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 163/173 (94.22%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD
Sbjct: 109 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 168

Query: 66  QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGMKKQRL 125
           QMNLFCSSMETNQEMTTRWS      XXXXXXXXXXXXXXXLDRHKASIEISSG+KKQRL
Sbjct: 169 QMNLFCSSMETNQEMTTRWS-----QXXXXXXXXXXXXXXXLDRHKASIEISSGVKKQRL 228

Query: 126 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 179
           EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC
Sbjct: 229 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 276

[Close]

BLAST of Carg04082 vs. NCBI nr
Match: XP_022951736.1 (probable transcription factor KAN4 isoform X3 [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 161/173 (93.06%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD
Sbjct: 109 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 168

Query: 66  QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGMKKQRL 125
           QMNLFCSSMETNQEMTTRWS        XXXXXXXXXXXXXLDRHKASIEISSG+KKQRL
Sbjct: 169 QMNLFCSSMETNQEMTTRWS------QHXXXXXXXXXXXXXLDRHKASIEISSGVKKQRL 228

Query: 126 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 179
           EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC
Sbjct: 229 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 275

[Close]

BLAST of Carg04082 vs. NCBI nr
Match: XP_022951734.1 (probable transcription factor KAN4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 164/173 (94.80%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD
Sbjct: 109 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 168

Query: 66  QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGMKKQRL 125
           QMNLFCSSMETNQEMTTRWS     XXXXXXXXXXXXXXXXLDRHKASIEISSG+KKQRL
Sbjct: 169 QMNLFCSSMETNQEMTTRWS----QXXXXXXXXXXXXXXXXLDRHKASIEISSGVKKQRL 228

Query: 126 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 179
           EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC
Sbjct: 229 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 277

[Close]

BLAST of Carg04082 vs. NCBI nr
Match: XP_023538394.1 (probable transcription factor KAN4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73
Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD
Sbjct: 118 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 177

Query: 66  QMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGMKKQRL 125
           QMNLFCSSMETNQEMTTRWS XXXXXXXXXXXXXXXXXXXXLDRHKASIEISSG+KKQRL
Sbjct: 178 QMNLFCSSMETNQEMTTRWS-XXXXXXXXXXXXXXXXXXXXLDRHKASIEISSGVKKQRL 237

Query: 126 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPLLKC 179
           EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSE PLLKC
Sbjct: 238 EGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSEPPLLKC 289

[Close]

BLAST of Carg04082 vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-09
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKST 41
           PKSVLELMNVKDLTLAH K  LQMYRTVK TDK +
Sbjct: 133 PKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of Carg04082 vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELM+VKDLTLAH K  LQMYRTVK+TDK+ A   Q  +V  +G+   N    S D
Sbjct: 241 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQ-SDVYENGSSGDN---NSDD 300

Query: 66  QMNLFCSSMETNQEMT 82
            M         ++E+T
Sbjct: 301 WMFDMNRKSRDSEELT 312

[Close]

BLAST of Carg04082 vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQ 46
           PKSVLELM+V+DLTLAH K  LQMYRT+KST+K T    Q
Sbjct: 192 PKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of Carg04082 vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-08
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKS 65
           PKSVLELM+VKDLTLAH K  LQMYRTVK+T+K  A    +  +E+  +G E+ +    S
Sbjct: 247 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SS 306

Query: 66  SDQ 67
           +DQ
Sbjct: 307 TDQ 307

[Close]

BLAST of Carg04082 vs. TAIR10
Match: AT4G04580.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 6  PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQ 48
          PK +L LM V+DLT++H K  LQMYR  K  + S  +K  R+
Sbjct: 42 PKRILSLMGVRDLTISHVKSHLQMYRNKKKEESSKEIKMMRE 83

[Close]

BLAST of Carg04082 vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKST 41
           PKSVLELMNVKDLTLAH K  LQMYRTVK TDK +
Sbjct: 133 PKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of Carg04082 vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDK 39
           PKSVLELM+VKDLTLAH K  LQMYRTVKSTDK
Sbjct: 352 PKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

[Close]

BLAST of Carg04082 vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSD 65
           PKSVLELM+VKDLTLAH K  LQMYRTVK+TDK+ A   Q  +V  +G+   N    S D
Sbjct: 241 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQ-SDVYENGSSGDN---NSDD 300

Query: 66  QMNLFCSSMETNQEMT 82
            M         ++E+T
Sbjct: 301 WMFDMNRKSRDSEELT 312

[Close]

BLAST of Carg04082 vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-07
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALKNQ 46
           PKSVLELM+V+DLTLAH K  LQMYRT+KST+K T    Q
Sbjct: 192 PKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of Carg04082 vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKS 65
           PKSVLELM+VKDLTLAH K  LQMYRTVK+T+K  A    +  +E+  +G E+ +    S
Sbjct: 247 PKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SS 306

Query: 66  SDQ 67
           +DQ
Sbjct: 307 TDQ 307

[Close]

BLAST of Carg04082 vs. TrEMBL
Match: tr|A0A0A0LP74|A0A0A0LP74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360740 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 87/183 (47.54%), Postives = 98/183 (53.55%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKST--ALKNQRQEVDPSG---AEISN-- 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDK+T  A+KNQRQ++D SG    EISN  
Sbjct: 96  PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQDIDGSGVSNCEISNNP 155

Query: 66  --PMWKSSDQ-MNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIE 125
              MWKS +Q M LFCSSMETNQEMT+RW+                              
Sbjct: 156 SLTMWKSPNQKMKLFCSSMETNQEMTSRWNQFCNNTIG---------------------- 215

Query: 126 ISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSELPL 179
            ++                                  TLGCPN+LTI SN HSSS+ELPL
Sbjct: 216 -NNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGCPNSLTIHSNPHSSSTELPL 255

[Close]

BLAST of Carg04082 vs. TrEMBL
Match: tr|A0A1S3BAW6|A0A1S3BAW6_CUCME (probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103487932 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 88/184 (47.83%), Postives = 99/184 (53.80%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKST--ALKNQRQEVDPSG---AEISN-- 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDK+T  A+KNQRQE+D SG    EISN  
Sbjct: 98  PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIDGSGVSNCEISNNP 157

Query: 66  --PMWKS-SDQMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXLDRHKASIE 125
              MWKS + +M LFCSSMETNQEMT+RW+                           +I 
Sbjct: 158 SLTMWKSPNKKMKLFCSSMETNQEMTSRWNQFC----------------------NNTIG 217

Query: 126 ISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPN-ALTIESNTHSSSSELP 179
            +                                   TLGCPN +LTI SN HSSS+ELP
Sbjct: 218 NNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGCPNYSLTIHSNPHSSSTELP 259

[Close]

BLAST of Carg04082 vs. TrEMBL
Match: tr|A0A1U8HKR7|A0A1U8HKR7_GOSHI (probable transcription factor KAN4 OS=Gossypium hirsutum OX=3635 GN=LOC107887026 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 73/197 (37.06%), Postives = 93/197 (47.21%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTA------LKNQR------------Q 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDK +         NQR             
Sbjct: 160 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMSLNQRVGIVDLDGRLSSP 219

Query: 66  EVDPSGA---EISNPMWKS---SDQMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXX 125
           + DP+ +   +IS P  ++     Q   + SSMETN    +                   
Sbjct: 220 KADPNASYSLKISTPSPQTIPRRTQSGSWPSSMETNNFSVSN----------RGNGLNFK 279

Query: 126 XXXXXLDRHKASIEISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALT 179
                +D  KA + +S  M K+RL+ S +S  D             LNL+ITLG P   T
Sbjct: 280 PNDAKVDGDKAVLHMSDRM-KERLDSSSMSPSDMF-----------LNLEITLGRP---T 331

[Close]

BLAST of Carg04082 vs. TrEMBL
Match: tr|A0A0B0NJ58|A0A0B0NJ58_GOSAR (Putative transcription factor KAN4-like protein OS=Gossypium arboreum OX=29729 GN=F383_11150 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.8e-10
Identity = 73/197 (37.06%), Postives = 92/197 (46.70%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTA------LKNQR------------Q 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDK +         NQR             
Sbjct: 160 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMSLNQRVGIVDLDGRLSSP 219

Query: 66  EVDPSGA---EISNPMWKS---SDQMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXX 125
           + DP+ +   +IS P  ++     Q   + SSMETN    +                   
Sbjct: 220 KADPNASYSLKISTPSPQTIPRRTQSGSWPSSMETNNFSVSN----------RGNGLNFK 279

Query: 126 XXXXXLDRHKASIEISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALT 179
                +D  KA + +S  M K+RL+ S +S  D             LNL+ITLG P   T
Sbjct: 280 PNDAKVDGDKAVLHMSDRM-KERLDSSSMSPSDMF-----------LNLEITLGRP---T 331

[Close]

BLAST of Carg04082 vs. TrEMBL
Match: tr|A0A2K2BI44|A0A2K2BI44_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G130200v3 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 72/194 (37.11%), Postives = 89/194 (45.88%), Query Frame = 0


Query: 6   PKSVLELMNVKDLTLAHAKEPLQMYRTVKSTDKSTAL------KNQRQ---EVDPSG--- 65
           PKSVLELMNVKDLTLAH K  LQMYRTVKSTDK +         NQR    EVD +G   
Sbjct: 163 PKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRARILEVDAAGLSS 222

Query: 66  --AEISNPMWK-SSDQMNLFCSSMETNQEMTTRWSXXXXXXXXXXXXXXXXXXXXXL--- 125
             A+ SNP    ++        S++ NQ      S                         
Sbjct: 223 GKADASNPSQSLNNPSPPSPLPSVQKNQRNPRSLSMAGDEKNRSSLDSLTYSSDFNAHDQ 282

Query: 126 ---DRHKASIEISSGMKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIES 179
              D  KA++ +++ M K+RL+ S LS  D             LNL+ TLG P   +   
Sbjct: 283 SKEDGQKATLHMAANM-KERLDSSSLSSSD-----------MLLNLEFTLGRP---SWHL 341

The following BLAST results are available for this feature:

BLAST of Carg04082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538393.1	1.5e-74	97.11	probable transcription factor KAN4 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022951735.1	4.5e-74	94.22	probable transcription factor KAN4 isoform X2 [Cucurbita moschata]	[more]
XP_022951736.1	4.5e-74	93.06	probable transcription factor KAN4 isoform X3 [Cucurbita moschata]	[more]
XP_022951734.1	4.5e-74	94.80	probable transcription factor KAN4 isoform X1 [Cucurbita moschata]	[more]
XP_023538394.1	2.9e-73	96.53	probable transcription factor KAN4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg04082 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42630.1	8.1e-09	82.86	Homeodomain-like superfamily protein	[more]
AT1G32240.1	1.1e-08	50.00	Homeodomain-like superfamily protein	[more]
AT4G17695.1	1.8e-08	70.00	Homeodomain-like superfamily protein	[more]
AT5G16560.1	6.8e-08	53.97	Homeodomain-like superfamily protein	[more]
AT4G04580.1	2.1e-04	47.62	Homeodomain-like superfamily protein	[more]

BLAST of Carg04082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJV5\|KAN4_ARATH	1.5e-07	82.86	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
sp\|Q0J235\|ROLL9_ORYSJ	1.5e-07	87.88	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
sp\|Q9C616\|KAN2_ARATH	1.9e-07	50.00	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
sp\|Q941I2\|KAN3_ARATH	3.2e-07	70.00	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
sp\|Q93WJ9\|KAN1_ARATH	1.2e-06	53.97	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of Carg04082 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LP74\|A0A0A0LP74_CUCSA	1.8e-26	47.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360740 PE=4 SV=1	[more]
tr\|A0A1S3BAW6\|A0A1S3BAW6_CUCME	1.5e-25	47.83	probable transcription factor KAN4 OS=Cucumis melo OX=3656 GN=LOC103487932 PE=4 ...	[more]
tr\|A0A1U8HKR7\|A0A1U8HKR7_GOSHI	2.3e-10	37.06	probable transcription factor KAN4 OS=Gossypium hirsutum OX=3635 GN=LOC107887026...	[more]
tr\|A0A0B0NJ58\|A0A0B0NJ58_GOSAR	8.8e-10	37.06	Putative transcription factor KAN4-like protein OS=Gossypium arboreum OX=29729 G...	[more]
tr\|A0A2K2BI44\|A0A2K2BI44_POPTR	4.4e-09	37.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G130200v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04082-RA	Carg04082-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 2..36 e-value: 1.0E-5 score: 27.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..111
None	No IPR available	PANTHER	PTHR31496:SF12	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 6..130
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 6..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04082	Csa2G360740	Cucumber (Chinese Long) v2	carcuB0989
Carg04082	ClCG08G015490	Watermelon (Charleston Gray)	carwcgB0958
Carg04082	CSPI02G19590	Wild cucumber (PI 183967)	carcpiB1012
Carg04082	Cucsa.232510	Cucumber (Gy14) v1	carcgyB1094
Carg04082	CmaCh05G002130	Cucurbita maxima (Rimu)	carcmaB1357
Carg04082	CmoCh12G004490	Cucurbita moschata (Rifu)	carcmoB1310
Carg04082	Lsi08G014290	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg04082	Cp4.1LG07g04670	Cucurbita pepo (Zucchini)	carcpeB1368
Carg04082	Cp4.1LG11g01630	Cucurbita pepo (Zucchini)	carcpeB1352
Carg04082	CsGy2G019470	Cucumber (Gy14) v2	carcgybB0962
Carg04082	MELO3C010906.2	Melon (DHL92) v3.6.1	carmedB0959
Carg04082	CsaV3_2G028290	Cucumber (Chinese Long) v3	carcucB1017
Carg04082	Cla97C08G159070	Watermelon (97103) v2	carwmbB1034
Carg04082	Bhi04G000271	Wax gourd	carwgoB1143

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04082	Carg08748	Silver-seed gourd	carcarB126
Carg04082	Carg11829	Silver-seed gourd	carcarB227

The following block(s) are covering this gene:

None