Carg03917-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03917-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tail fiber
Location	Cucurbita_argyrosperma_scaffold_011 : 795596 .. 799409 (-)
Sequence length	1476

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCGTGGTGTCAACAATGGCAACATCCACGCCATCGTCGTCATCAACAGCATCTAAAAGTTGGATCAGAAATCTTTCATCAATTGCTTCTCGCATCTATTTCTTCCTCATCATTCTCCAGATCCCGCTCTTCAGGTGTGTTTTCAGTTTCTTTACCTTTTTTTTGCACTTCGACAGTTCATATGATTTAGTTACTCGGATGGTAGAACTGTTTAGCACTGAAACTCTTTAGTTAGTTTACTCTCTGCGGTTAGCGTTAAAGTTTTGAGGATTATGTGAGAGTCGTGGCTTGTAACTGTCACTCTGCTGTTTTCTCTTTGTTGATCTTTTTGTTTCTGTTGTATTTCTGTCCTATTTGATCAGACTTTTCCTGTGTTTGAATATCTGATTCTCAGAAACAAACGATCTGTGAAGATTGAATTTCCATAGCTTAACAGTTGACTGTCATTTAACGTGATGTTAGAGCAGGAGATTAGGGTTTAAATCACTTCCTGTCCATGTGAGTAGTTTATGTGTTGTTTTTTTTCTGTGAATTAAAACTAATGTTCGAGGACATACCGGAGGGGAGTGCTTGAGAATGGGATGAAAAGGTTGAATTGATTGAATTTTTGCCATTTCTTTTTTAATTGAATCTTCATGTATGCATTTTATTTGCTTGGTTTCATGCTTGTATCTTCGTTTAGTGATTTGCATATTGCAAGTGATTCCTCTGCGTGGGAATTAATGGAATGGCTGTGTTGAAAGAATGGACCTCAATAGAATCAATATGTAGTATTTGGCTTCTGTTTGAAAATTTTCCATTATCCTTATATCAATGACTGTTGATTTTTTTAACTCCTCTTAGTATCACTTTCATCATCATGTCCTCTGGATATGGTAAGGGAAACTGCCTAATATGGTTGTTTGCTGATATGCTTACGAATCTAGAAATAAACCTTGTGACAAAAAAGAAAATGAATGGCTGGATGTTCTTGCTTTATTTTACTCTTTGCTTCATCGGTTATTAGCTATATATTCCTTCCAACATTCCATACAACAACTTTCCAGTTTTTGGAGTTGTGACTCTTGGCTTGACAATACAATATTTCTTTTCTGCAAATCTTGAAAATCCATGTAGCCTTTGGTGTACGATGTATATGAGCATTACATAATTAAAATCCATGTCCTCTCAGGGTCCCATGCAGATCTGGCATGTGTACAACCCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCCGTAGTTAAGGCACTTCTCTATCCTGGAGCAATTGTGAATGGCCTTGTCATGAATTTGACGGTGCCCAGCTGGAGTAGCTTGTTAGACGTCTATAACTTGACCAATATCAAGGAAGCCTCTGCTATGACTGATCTTCAACGCTTAGAGGTTCCTTTGCTTAACCTCCTTGTTTATTTTTCATTTCAATTTGTAGATTTAGATCTATTATGGTTCTATCTTGGATTCAAGCCCTTATTTTTGCCCGAGAAATGACTGGTTATTTTTAATTTTCTCAACATGGTTAGCTAACAAATACACTTCCTGGGGACCTGGAGTTTCCTTTTTGGGAATCATATGGGAATCTGATAGAACTCCTTTATTCATTCACATAGAGAAGCACATAGCTAAGGGAGAATTCAAGAGCTCCTTACCCCTCCTAAACACCAAGATTTTACCCAAAAAGTGCCCATTTGTTGTGCATATTCTAGACGCTCTCTGATTGCATACCCTTTCTGTCAATCCAACTAAGTAGTTACTTTTAGTCCCACTACATACATACATGCTAAACTCTAAGCCGATCCCTTACTCTCCTATGATTACTTACTATACTATCGGGATCTAGCACCACCCACAGCCCAAATAACAGACGAAGTAGGAATTGTGTATTTGCATTGCAAAGGCAGAGAAACGTACCATTGTTGCATCCACTGTAGATGCATGTTCCCGTCAAATTAGAACCTCCATGACTTTTGGGTCTGATTGTGAAGTTCCCAATGCCTCAGTTGTCTTCCCCACCAATACTATATAAGAAGAGAGACTTGCTGAAAACTCTGGAGAAGTTTTTCCAACATCCTTTCATAATTGGGAGACATGAAAACTGGGTGAACAACGACCATGTTTGCGAAAAACAGATGATAAGCTACTGAGCGAATATTCTCATTAACCTAAAGGGGACCAATGAATCTAGGAGCCAACTTAGGATTTGGATGCGTAACCAATGATTCTTGCAGATTTGGTTTTAACTTAAGATGCATTTGGTAGTTGACTGCAAATTGGACTTCTAGTAGCTTTCCAAGTTGTTGTCATACATTGCTGCTCTTACTGCAATTTCTCCTTCAAGACCTCGGACATGCCATATTTGTTTATTCACACGACCAGGTGCATTGCTAAGGGATAACTTGAGAATTCCTTATCCCTCCTAAACTCCTATTGAGAATTTCTTTGCATCATACGTACATGTATGTAGAATATTTATTGCGTTTCTGGTTAAGAAAATGTTTAGACCGATGAACCAATCATTTCACAGATGAATAAAAGTATTCCACCTTTGCCCTTAAAAGAAAAATAAACAGAACCCCATTCAAACCCTTCTTCTGTTACTTTTCTTCAGAGAGGGCTCGGTAATGCTTTGAATCAACTGGTAAATTAATAACTAGTTACTCAGACAGATGACTTGTCCTTCTACCCAGGTTCTTGCCGGAAGCTATTTTTCAGTGGCTGGAGCCTTTGTGGGTCTTTTGAAGCCCGGAAGGATGAGCATGTTTGGAAGTCTCTTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTCGGAAAACCTGTGAACACAGATCCTGCCAAAGCTGTTTATGTTTATCCCACAATGATTATTGCCATGATCTGTGCTTTCTCTTCGGTCAAGTATGATCTGAAGAAGGTAGCAGCTAGAAGTGCCCCTGCTCGACCAATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAGTGAGTCGAAATGAAATTTCCTTCTACTGGTTTTATGTTTGATTCTTACTCCTGACCAATCCAAAGATTTTTTAGGCATGTAATTCCCGTTTTCTGGATCTATTAGTTGTGTCGTGATATGCATACACTTTTCTTCCCAGATATTCTTTCCAGCACTCCCTGACTTTCCCAATTTGAATAGGTAGATCTGCATCCATTTGGTTCAATTGTATGAATCAGAAAGAGAACTTTAGTCAAGTTCATCAATTATTGGGTTGGAAAAGACGAACCATTGACGAGATTGAATGGTAAAAAATAATTTTTTAAAAAATCCAATTTGGACAATAATTTAAATGGTTAATAGTTACCATATTACCTTTATCCTACAGGTTTCAAAACTATCATTCAACTTTTCGAATCATACAGGTTTCAAAACTACTCTTCAACTTTTCGAATACTTTTTCGAGTTTGTGATAGCCATTTATTAATTTTTCTTATATTCTACACATGAATTTCTTTATTATATACTTTTTCACATAGTTTTATTTAGCTAAGATTTAACTATTTTCTTAAGAAAGACGGTACTCGAACGTCTACCGACCACATTGGAAGAATTTTTATGGTCTATAATGCATCACGACATTAATATAGGTGATAGAGTTTAAGAGAAGAAGCTCGAGTCATTATATCTCCCCTAGTTGGAGTGTGCTTTGTCATAACATCTCTTTGTGCATAATACTACTAGCTTGCAATGGAATTGGATCTCTCTTTGTTGGTCTTAGTTATGGTTTAGGGTATAGTTGGTGTTATAAATTTAATTGTGATATATATTGG

mRNA sequence

TCTCGTGGTGTCAACAATGGCAACATCCACGCCATCGTCGTCATCAACAGCATCTAAAAGTTGGATCAGAAATCTTTCATCAATTGCTTCTCGCATCTATTTCTTCCTCATCATTCTCCAGATCCCGCTCTTCAGGGTCCCATGCAGATCTGGCATGTGTACAACCCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCCGTAGTTAAGGCACTTCTCTATCCTGGAGCAATTGTGAATGGCCTTGTCATGAATTTGACGGTGCCCAGCTGGAGTAGCTTGTTAGACGTCTATAACTTGACCAATATCAAGGAAGCCTCTGCTATGACTGATCTTCAACGCTTAGAGGTTCTTGCCGGAAGCTATTTTTCAGTGGCTGGAGCCTTTGTGGGTCTTTTGAAGCCCGGAAGGATGAGCATGTTTGGAAGTCTCTTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTCGGAAAACCTGTGAACACAGATCCTGCCAAAGCTGTTTATGTTTATCCCACAATGATTATTGCCATGATCTGTGCTTTCTCTTCGGTCAAGTATGATCTGAAGAAGGTAGCAGCTAGAAGTGCCCCTGCTCGACCAATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAGTGAGTCGAAATGAAATTTCCTTCTACTGGTTTTATGTTTGATTCTTACTCCTGACCAATCCAAAGATTTTTTAGGCATGTAATTCCCGTTTTCTGGATCTATTAGTTGTGTCGTGATATGCATACACTTTTCTTCCCAGATATTCTTTCCAGCACTCCCTGACTTTCCCAATTTGAATAGGTAGATCTGCATCCATTTGGTTCAATTGTATGAATCAGAAAGAGAACTTTAGTCAAGTTCATCAATTATTGGGTTGGAAAAGACGAACCATTGACGAGATTGAATGGTAAAAAATAATTTTTTAAAAAATCCAATTTGGACAATAATTTAAATGGTTAATAGTTACCATATTACCTTTATCCTACAGGTTTCAAAACTATCATTCAACTTTTCGAATCATACAGGTTTCAAAACTACTCTTCAACTTTTCGAATACTTTTTCGAGTTTGTGATAGCCATTTATTAATTTTTCTTATATTCTACACATGAATTTCTTTATTATATACTTTTTCACATAGTTTTATTTAGCTAAGATTTAACTATTTTCTTAAGAAAGACGGTACTCGAACGTCTACCGACCACATTGGAAGAATTTTTATGGTCTATAATGCATCACGACATTAATATAGGTGATAGAGTTTAAGAGAAGAAGCTCGAGTCATTATATCTCCCCTAGTTGGAGTGTGCTTTGTCATAACATCTCTTTGTGCATAATACTACTAGCTTGCAATGGAATTGGATCTCTCTTTGTTGGTCTTAGTTATGGTTTAGGGTATAGTTGGTGTTATAAATTTAATTGTGATATATATTGG

Coding sequence (CDS)

ATGGCAACATCCACGCCATCGTCGTCATCAACAGCATCTAAAAGTTGGATCAGAAATCTTTCATCAATTGCTTCTCGCATCTATTTCTTCCTCATCATTCTCCAGATCCCGCTCTTCAGGGTCCCATGCAGATCTGGCATGTGTACAACCCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCCGTAGTTAAGGCACTTCTCTATCCTGGAGCAATTGTGAATGGCCTTGTCATGAATTTGACGGTGCCCAGCTGGAGTAGCTTGTTAGACGTCTATAACTTGACCAATATCAAGGAAGCCTCTGCTATGACTGATCTTCAACGCTTAGAGGTTCTTGCCGGAAGCTATTTTTCAGTGGCTGGAGCCTTTGTGGGTCTTTTGAAGCCCGGAAGGATGAGCATGTTTGGAAGTCTCTTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTCGGAAAACCTGTGAACACAGATCCTGCCAAAGCTGTTTATGTTTATCCCACAATGATTATTGCCATGATCTGTGCTTTCTCTTCGGTCAAGTATGATCTGAAGAAGGTAGCAGCTAGAAGTGCCCCTGCTCGACCAATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAGTGA

Protein sequence

MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLIASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMICAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK

Homology

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BLAST of Carg03917-RA vs. NCBI nr
Match: XP_022951967.1 (uncharacterized protein LOC111454694 [Cucurbita moschata])

HSP 1 Score: 401.0 bits (1029), Expect = 2.6e-108
Identity = 213/216 (98.61%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATS PSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSMPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLT+IKEASAMTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTDIKEASAMTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAK VYVYPTMIIAMI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKTVYVYPTMIIAMI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 216

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BLAST of Carg03917-RA vs. NCBI nr
Match: XP_023538499.1 (uncharacterized protein LOC111799258 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.7 bits (1018), Expect = 4.9e-107
Identity = 212/216 (98.15%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSSS   SKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSS---SKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGL+MNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLIMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 213

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BLAST of Carg03917-RA vs. NCBI nr
Match: XP_023002496.1 (uncharacterized protein LOC111496320 [Cucurbita maxima])

HSP 1 Score: 396.0 bits (1016), Expect = 8.4e-107
Identity = 213/216 (98.61%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           M TST SSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MVTSTQSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYDLKKV ARSAPARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDLKKV-ARSAPARPIAKPLQSSSKSKLK 215

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BLAST of Carg03917-RA vs. NCBI nr
Match: XP_008445192.1 (PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 1.8e-101
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of Carg03917-RA vs. NCBI nr
Match: XP_008445193.1 (PREDICTED: uncharacterized protein LOC103488297 isoform X4 [Cucumis melo] >XP_008445194.1 PREDICTED: uncharacterized protein LOC103488297 isoform X5 [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 1.8e-101
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKLK 215

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BLAST of Carg03917-RA vs. TAIR10
Match: AT5G11280.1 (unknown protein)

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-87
Identity = 156/204 (76.47%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 13  SKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLIASEVFPAPVVKA 72
           SK WI+  +S+AS +YF LI+ QIP     CRSGMC++P+HVTSSQLI+SE+FP P++KA
Sbjct: 7   SKGWIKKWTSMASSVYFVLILFQIPXXXXXCRSGMCSSPIHVTSSQLISSEIFPVPMIKA 66

Query: 73  LLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLAGSYFSVAGAFVG 132
           LLYPGA+VNGL +N+T P W ++LD+YNLTN+KEASA+TDLQRLEVLAGSYFSVAGAFVG
Sbjct: 67  LLYPGAVVNGLAINMTFPKWENVLDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVG 126

Query: 133 LLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMICAFSSVKYDLKK 192
           LLKPGRMSMFGSLL++WGLVKEGILGKPVNTDPAK VYVYPTM++AMICAFS +KYDL+K
Sbjct: 127 LLKPGRMSMFGSLLLVWGLVKEGILGKPVNTDPAKTVYVYPTMVLAMICAFSMIKYDLRK 186

Query: 193 VAARSAPARPIAKPLQSSSKSKLK 217
            A R+APARPIAKPL SSSKSKLK
Sbjct: 187 -ATRAAPARPIAKPLMSSSKSKLK 209

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BLAST of Carg03917-RA vs. TAIR10
Match: AT1G80200.1 (unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19
Identity = 64/215 (29.77%), Postives = 100/215 (46.51%), Query Frame = 0


Query: 12  ASKSWIRNLSSIASRIYFFLIILQIPLFR-----------------------------VP 71
           + K W   +S IAS ++  LI+ QIPLFR                             V 
Sbjct: 4   SKKKWASIISVIASSLFSLLIVFQIPLFRVTLFNNAGALLDLDDRKKTDSILLGIEEIVA 63

Query: 72  CRSGMCTTPLHVTSSQLIASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLT 131
           CR+  C TPL V SS+LIA+                          +PS+  L   Y+  
Sbjct: 64  CRNKSCETPLEVISSELIATXXXXXXXXXXXXXXXXXXXXXXAGSKIPSYHHLFQFYSFD 123

Query: 132 NI-KEASAMTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPV 191
            + + +S  TD+  LEV AGS   + GA + L KP R++  G+LL+ WGL+++ +L    
Sbjct: 124 GMYRTSSFATDIHHLEVFAGSCLCLLGALLNLFKPTRITFIGTLLISWGLIRDILLLDSA 183

Query: 192 N---TDPAKAVYVYPTMIIAMICAFSSVKYDLKKV 194
           +   +    +V VYPT+ +A + AF S++ D++K+
Sbjct: 184 HDWISPHRNSVRVYPTLFLASLSAFLSMRSDVRKI 218

[Close]

BLAST of Carg03917-RA vs. TrEMBL
Match: tr|A0A1S3BCZ0|A0A1S3BCZ0_CUCME (uncharacterized protein LOC103488297 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.2e-101
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of Carg03917-RA vs. TrEMBL
Match: tr|A0A1S3BC32|A0A1S3BC32_CUCME (uncharacterized protein LOC103488297 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.2e-101
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKLK 215

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BLAST of Carg03917-RA vs. TrEMBL
Match: tr|A0A1S4DVJ9|A0A1S4DVJ9_CUCME (uncharacterized protein LOC103488297 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.2e-101
Identity = 197/216 (91.20%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKLK 215

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BLAST of Carg03917-RA vs. TrEMBL
Match: tr|A0A1S3BC26|A0A1S3BC26_CUCME (uncharacterized protein LOC103488297 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.5e-101
Identity = 196/215 (91.16%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATSTPSS+STASKSW+RNLSSIASR+YF LIILQIPLFR+ CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKL 216
           CAFSSVKYD+KKV  R APARPIAKPLQSSSKSKL
Sbjct: 181 CAFSSVKYDVKKV-VRGAPARPIAKPLQSSSKSKL 214

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BLAST of Carg03917-RA vs. TrEMBL
Match: tr|A0A0A0LMA7|A0A0A0LMA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381640 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 5.9e-101
Identity = 197/216 (91.20%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MATSTPSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLI 60
           MATST SS+STASKSWIRNLSSIASR+YF LIILQIPLFR+ CRSGMCT+PLHVTSSQLI
Sbjct: 1   MATSTSSSTSTASKSWIRNLSSIASRVYFLLIILQIPLFRISCRSGMCTSPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L D+YNLTNIKEASA+TDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSNLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMI 180
           GSYFSVAGAFVGLLKPGRMSMFG+LLVIWGLVKEGILGKPVNTDP KAVYVYPTMI+A+I
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDLKKVAARSAPARPIAKPLQSSSKSKLK 217
           CAFSSVKYD+KKV AR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKV-ARGAPARPIAKPLQSSSKSKLK 215

The following BLAST results are available for this feature:

BLAST of Carg03917-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951967.1	2.6e-108	98.61	uncharacterized protein LOC111454694 [Cucurbita moschata]	[more]
XP_023538499.1	4.9e-107	98.15	uncharacterized protein LOC111799258 [Cucurbita pepo subsp. pepo]	[more]
XP_023002496.1	8.4e-107	98.61	uncharacterized protein LOC111496320 [Cucurbita maxima]	[more]
XP_008445192.1	1.8e-101	91.20	PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo]	[more]
XP_008445193.1	1.8e-101	91.20	PREDICTED: uncharacterized protein LOC103488297 isoform X4 [Cucumis melo] >XP_00...	[more]

BLAST of Carg03917-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11280.1	2.4e-87	76.47	unknown protein	[more]
AT1G80200.1	2.1e-19	29.77	unknown protein	[more]

BLAST of Carg03917-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03917-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCZ0\|A0A1S3BCZ0_CUCME	1.2e-101	91.20	uncharacterized protein LOC103488297 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BC32\|A0A1S3BC32_CUCME	1.2e-101	91.20	uncharacterized protein LOC103488297 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DVJ9\|A0A1S4DVJ9_CUCME	1.2e-101	91.20	uncharacterized protein LOC103488297 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BC26\|A0A1S3BC26_CUCME	3.5e-101	91.16	uncharacterized protein LOC103488297 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LMA7\|A0A0A0LMA7_CUCSA	5.9e-101	91.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03917	Carg03917	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03917-RA	Carg03917-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03917-RA.three_prime_UTR.1	Carg03917-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03917-RA.CDS.3	Carg03917-RA.CDS.3	CDS
Carg03917-RA.CDS.2	Carg03917-RA.CDS.2	CDS
Carg03917-RA.CDS.1	Carg03917-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03917-RA.five_prime_UTR.1	Carg03917-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03917-RA.exon.3	Carg03917-RA.exon.3	exon
Carg03917-RA.exon.2	Carg03917-RA.exon.2	exon
Carg03917-RA.exon.1	Carg03917-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35288	FAMILY NOT NAMED	coord: 8..216
None	No IPR available	PANTHER	PTHR35288:SF1	SUBFAMILY NOT NAMED	coord: 8..216