Carg03853-RA (mRNA) Silver-seed gourd

Overview
NameCarg03853-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_011 : 428705 .. 431388 (+)
Sequence length1075
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGGTATGCGTTATTTCGCTGTCTCTAATTACGAAATTATGTTTACTGTGCTCGATTGTGAAGAAACTTCTGGAAAAGGAGTTTCGATTACTTGTTTTTTTTTTTTTTTCCTTCTTGTTACCTGAATCTGCATCCTTCGCGTTTTTGTTTTTGCTGTTGATTATTGCTCTGTTTTCGAGTTACGGCTTCAAGTTAGTGTAAACCGAAAAACATGAATGATGTGGATCTCTTGTTGCTTAAAACTGATGAAAAAAAGTTGCGATTATCTTCTTTTAATATTCTACTAAGATTTTTGAGAGCGTGATTCTTATCGGATTGATTTCGCTGTTCTCTCCGCCGGTTCAAGCGGATCCTAAAGTTTACCTCGCAGGAAAACAACAATAATAGGCAGAAAAACCGAAATGTTTTTCACTGTATATTTTAGGTGGATGCTCTTGATACTCTATCTTCAATCTTTCACAGGTTCGATAATCTGATATAGGAGAGCATGCAAAATGTCAGTATTTCTAAGTTCCATCATCTTTTGTTCTGAATTTCTGATAGAGGTTGGTCAGTGTCGATAGCATTTGTCATTGTCTATCTTCAATCTTTCACAGCTTCGATAATCTGATATAAAAGAGCATGCGAAATGTCAGTATTTCTAAATTCCATCATCGTTTGTTCTGAATTACTGATAAAGATCGGTCAGTGTCGATAGCATTAATATTTAGGAAATTGCCACATGCAGGTATCAAAGAGTACTCATGAGATGTTTGAATTATTGTATATTTCTACAGCTCTTTTCATTTTCTATCGAATTCACATTTCTATAATTTTATATGATTTTCTCTCAACTAATTCGTTGTTTGTAGTCCAGCTGATAGGTTCTTTTTTTTAACCAGTGACCATCTTATATGACAGATCTCATTGAGTGGATCCAATTGACCTCAATTTTGGAGGTATTCTGTTACCTCTTGCAAGAAGGTAAGCTTTATAAACTAGATGGTTTAGTTATGTTTCTATATTGTAAGTCTATTTTCAATAAGTTTGTTTCCATAACAAATGTTATAATAATGCTGGACCAACCACTCTTTTAAAAAATGCCGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGGTACGTAATGAACTTTCCTTACATTTTTTGTTTATTGCTAGTATCCGAACAATTTATTTCTTTAAACCTCAAATATTAAATCTTTGCTAAATAAAAAAACAACAAATATCATGGTAAAAAAGAAGAAAAACTTGGAAAAGAAATTCCTACAATTTATTGAATTCATCGATTTTGTATCAAATTATTACTTATAAAAATATGCGTTCAACTTTTTTTTTCGTAAGTGGAGTATAAAGTAATTGTTTATGCCTTCAACATTTTTTTTTTCGAACAACATTCAAATTAATAACTTATTGAATTAAGAGTATATGTTTCATGAAAATTAAACTATCTTATTTTTAAAATTTTTCTCCTTTTAATATTTTTTCTGTGTCTAACGTATCTATAAATTTTAAGAAATATTGAATAGATCATTAAACCGTTAGAAATTTTTAGAACTCCTTAAATTAATAATTGATAGTCTAGTAACCTCTTTAAGCACTAATAACTCTAAAAGTTGGCTAATTGTTTTAACTTGATCAGAGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAAGAGACTAAAATCCCGCTTAAATCACATTTTTAAATTAAAGCATGATCATTAAAATATATTAAGAACTAACGAATTAAAGCATTATCATTAAAATATATTAAGAACTAACAATATGGTGCGCAACCAAAATACAACATTAGTTACTCTGGAATAACATCTCTTGGAAGAATAACATCTCTAGGAAGCAAGATCTTTTGAGTAGAGTTTAAAATTTACTCCGATAGTTCTAAACCAAAATGAGTTGCAATATCAATTAGTTTATTTTATAATGGAGTGTTTTGAAGAAGAAAGAGAATTTGGATAAAACCAACGTTCAAATCTAATACAACTTTTTTTGCCCGAGGAATAGATTGTTACCGTTTTTTTTTTTATTCGAATCAATTTATACCAAAATATTAAAGTGATATACATAAAACTCTAAACTAGTAATTATATTAATTTAACTCTAAATTTTCATTAGTGTGTCAATTTTAAACTATTTATTAGA

mRNA sequence

ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAAGAGACTAAAATCCCGCTTAAATCACATTTTTAAATTAAAGCATGATCATTAAAATATATTAAGAACTAACGAATTAAAGCATTATCATTAAAATATATTAAGAACTAACAATATGGTGCGCAACCAAAATACAACATTAGTTACTCTGGAATAACATCTCTTGGAAGAATAACATCTCTAGGAAGCAAGATCTTTTGAGTAGAGTTTAAAATTTACTCCGATAGTTCTAAACCAAAATGAGTTGCAATATCAATTAGTTTATTTTATAATGGAGTGTTTTGAAGAAGAAAGAGAATTTGGATAAAACCAACGTTCAAATCTAATACAACTTTTTTTGCCCGAGGAATAGATTGTTACCGTTTTTTTTTTTATTCGAATCAATTTATACCAAAATATTAAAGTGATATACATAAAACTCTAAACTAGTAATTATATTAATTTAACTCTAAATTTTCATTAGTGTGTCAATTTTAAACTATTTATTAGA

Coding sequence (CDS)

ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAA

Protein sequence

MERVFGTHWRKPADLQWMFSQDVFLYFSRCKFLEFLQHRTPFSLFVRYPCEFSSSLRLGYRRMESIQNALEETGGSAMDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVFIFVMQQHQSLNISAKGKRTESCTPSWMAVDEEITEHPMTTIYGGRRSWLHMSTNKGRNLMLQVMKLKQSYCSNCRHSRHTR
Homology
[Close]
BLAST of Carg03853-RA vs. NCBI nr
Match: XP_022950981.1 (uncharacterized protein LOC111453965 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-07
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 78  MDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVF 115
           MDV TRRFSLL SMQISG+FAASNSVFLVRTLSVRVF
Sbjct: 1   MDVSTRRFSLLFSMQISGVFAASNSVFLVRTLSVRVF 37

[Close]
BLAST of Carg03853-RA vs. NCBI nr
Match: XP_023002550.1 (uncharacterized protein LOC111496362 [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 78  MDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVF 115
           MDVF R FS L SMQISG+FAASNSVFLVRTLSVRVF
Sbjct: 1   MDVFIRHFS-LFSMQISGVFAASNSVFLVRTLSVRVF 36

The following BLAST results are available for this feature:
BLAST of Carg03853-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950981.16.8e-0791.89uncharacterized protein LOC111453965 [Cucurbita moschata][more]
XP_023002550.11.1e-0486.49uncharacterized protein LOC111496362 [Cucurbita maxima][more]
BLAST of Carg03853-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg03853-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03853-RA vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg03853Carg03853gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg03853-RACarg03853-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03853-RA.exon.1Carg03853-RA.exon.1exon
Carg03853-RA.exon.2Carg03853-RA.exon.2exon
Carg03853-RA.exon.3Carg03853-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03853-RA.CDS.1Carg03853-RA.CDS.1CDS
Carg03853-RA.CDS.2Carg03853-RA.CDS.2CDS
Carg03853-RA.CDS.3Carg03853-RA.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03853-RA.three_prime_UTR.1Carg03853-RA.three_prime_UTR.1three_prime_UTR