Carg03853 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03853
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_011 : 428705 .. 431388 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGGTATGCGTTATTTCGCTGTCTCTAATTACGAAATTATGTTTACTGTGCTCGATTGTGAAGAAACTTCTGGAAAAGGAGTTTCGATTACTTGTTTTTTTTTTTTTTTCCTTCTTGTTACCTGAATCTGCATCCTTCGCGTTTTTGTTTTTGCTGTTGATTATTGCTCTGTTTTCGAGTTACGGCTTCAAGTTAGTGTAAACCGAAAAACATGAATGATGTGGATCTCTTGTTGCTTAAAACTGATGAAAAAAAGTTGCGATTATCTTCTTTTAATATTCTACTAAGATTTTTGAGAGCGTGATTCTTATCGGATTGATTTCGCTGTTCTCTCCGCCGGTTCAAGCGGATCCTAAAGTTTACCTCGCAGGAAAACAACAATAATAGGCAGAAAAACCGAAATGTTTTTCACTGTATATTTTAGGTGGATGCTCTTGATACTCTATCTTCAATCTTTCACAGGTTCGATAATCTGATATAGGAGAGCATGCAAAATGTCAGTATTTCTAAGTTCCATCATCTTTTGTTCTGAATTTCTGATAGAGGTTGGTCAGTGTCGATAGCATTTGTCATTGTCTATCTTCAATCTTTCACAGCTTCGATAATCTGATATAAAAGAGCATGCGAAATGTCAGTATTTCTAAATTCCATCATCGTTTGTTCTGAATTACTGATAAAGATCGGTCAGTGTCGATAGCATTAATATTTAGGAAATTGCCACATGCAGGTATCAAAGAGTACTCATGAGATGTTTGAATTATTGTATATTTCTACAGCTCTTTTCATTTTCTATCGAATTCACATTTCTATAATTTTATATGATTTTCTCTCAACTAATTCGTTGTTTGTAGTCCAGCTGATAGGTTCTTTTTTTTAACCAGTGACCATCTTATATGACAGATCTCATTGAGTGGATCCAATTGACCTCAATTTTGGAGGTATTCTGTTACCTCTTGCAAGAAGGTAAGCTTTATAAACTAGATGGTTTAGTTATGTTTCTATATTGTAAGTCTATTTTCAATAAGTTTGTTTCCATAACAAATGTTATAATAATGCTGGACCAACCACTCTTTTAAAAAATGCCGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGGTACGTAATGAACTTTCCTTACATTTTTTGTTTATTGCTAGTATCCGAACAATTTATTTCTTTAAACCTCAAATATTAAATCTTTGCTAAATAAAAAAACAACAAATATCATGGTAAAAAAGAAGAAAAACTTGGAAAAGAAATTCCTACAATTTATTGAATTCATCGATTTTGTATCAAATTATTACTTATAAAAATATGCGTTCAACTTTTTTTTTCGTAAGTGGAGTATAAAGTAATTGTTTATGCCTTCAACATTTTTTTTTTCGAACAACATTCAAATTAATAACTTATTGAATTAAGAGTATATGTTTCATGAAAATTAAACTATCTTATTTTTAAAATTTTTCTCCTTTTAATATTTTTTCTGTGTCTAACGTATCTATAAATTTTAAGAAATATTGAATAGATCATTAAACCGTTAGAAATTTTTAGAACTCCTTAAATTAATAATTGATAGTCTAGTAACCTCTTTAAGCACTAATAACTCTAAAAGTTGGCTAATTGTTTTAACTTGATCAGAGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAAGAGACTAAAATCCCGCTTAAATCACATTTTTAAATTAAAGCATGATCATTAAAATATATTAAGAACTAACGAATTAAAGCATTATCATTAAAATATATTAAGAACTAACAATATGGTGCGCAACCAAAATACAACATTAGTTACTCTGGAATAACATCTCTTGGAAGAATAACATCTCTAGGAAGCAAGATCTTTTGAGTAGAGTTTAAAATTTACTCCGATAGTTCTAAACCAAAATGAGTTGCAATATCAATTAGTTTATTTTATAATGGAGTGTTTTGAAGAAGAAAGAGAATTTGGATAAAACCAACGTTCAAATCTAATACAACTTTTTTTGCCCGAGGAATAGATTGTTACCGTTTTTTTTTTTATTCGAATCAATTTATACCAAAATATTAAAGTGATATACATAAAACTCTAAACTAGTAATTATATTAATTTAACTCTAAATTTTCATTAGTGTGTCAATTTTAAACTATTTATTAGA

mRNA sequence

ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAAGAGACTAAAATCCCGCTTAAATCACATTTTTAAATTAAAGCATGATCATTAAAATATATTAAGAACTAACGAATTAAAGCATTATCATTAAAATATATTAAGAACTAACAATATGGTGCGCAACCAAAATACAACATTAGTTACTCTGGAATAACATCTCTTGGAAGAATAACATCTCTAGGAAGCAAGATCTTTTGAGTAGAGTTTAAAATTTACTCCGATAGTTCTAAACCAAAATGAGTTGCAATATCAATTAGTTTATTTTATAATGGAGTGTTTTGAAGAAGAAAGAGAATTTGGATAAAACCAACGTTCAAATCTAATACAACTTTTTTTGCCCGAGGAATAGATTGTTACCGTTTTTTTTTTTATTCGAATCAATTTATACCAAAATATTAAAGTGATATACATAAAACTCTAAACTAGTAATTATATTAATTTAACTCTAAATTTTCATTAGTGTGTCAATTTTAAACTATTTATTAGA

Coding sequence (CDS)

ATGGAGAGAGTATTCGGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAGTTTTTGCAGCATCGGACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCAAGCAGCCTGCGTCTTGGTTATCGAAGAATGGAGAGTATTCAGAACGCATTGGAGGAAACCGGCGGATCTGCAATGGATGTTTTCACAAGACGTTTTTCTCTACTTCTCTCGATGCAAATTTCTGGAATTTTTGCAGCATCGAACTCCGTTTTCCTTGTTCGTACGTTATCCGTGCGAGTTTTCATCTTCGTGATGCAGCAGCATCAATCACTCAATATTTCAGCCAAAGGAAAACGAACTGAAAGTTGTACTCCGTCATGGATGGCGGTCGATGAGGAAATAACCGAGCACCCAATGACTACTATTTATGGAGGAAGAAGAAGCTGGCTTCACATGAGCACCAATAAGGGAAGGAATCTGATGCTGCAAGTAATGAAGCTGAAACAGAGTTATTGCAGTAATTGTCGCCACAGTCGCCATACAAGGTAA

Protein sequence

MERVFGTHWRKPADLQWMFSQDVFLYFSRCKFLEFLQHRTPFSLFVRYPCEFSSSLRLGYRRMESIQNALEETGGSAMDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVFIFVMQQHQSLNISAKGKRTESCTPSWMAVDEEITEHPMTTIYGGRRSWLHMSTNKGRNLMLQVMKLKQSYCSNCRHSRHTR

Homology

[Close]

BLAST of Carg03853 vs. NCBI nr
Match: XP_022950981.1 (uncharacterized protein LOC111453965 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-07
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 78  MDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVF 115
           MDV TRRFSLL SMQISG+FAASNSVFLVRTLSVRVF
Sbjct: 1   MDVSTRRFSLLFSMQISGVFAASNSVFLVRTLSVRVF 37

[Close]

BLAST of Carg03853 vs. NCBI nr
Match: XP_023002550.1 (uncharacterized protein LOC111496362 [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 78  MDVFTRRFSLLLSMQISGIFAASNSVFLVRTLSVRVF 115
           MDVF R FS L SMQISG+FAASNSVFLVRTLSVRVF
Sbjct: 1   MDVFIRHFS-LFSMQISGVFAASNSVFLVRTLSVRVF 36

The following BLAST results are available for this feature:

BLAST of Carg03853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950981.1	6.8e-07	91.89	uncharacterized protein LOC111453965 [Cucurbita moschata]	[more]
XP_023002550.1	1.1e-04	86.49	uncharacterized protein LOC111496362 [Cucurbita maxima]	[more]

BLAST of Carg03853 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03853 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03853 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03853-RA	Carg03853-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03853	Silver-seed gourd	carcarB071
Carg03853	Cucumber (Gy14) v2	carcgybB0960
Carg03853	Cucumber (Gy14) v1	carcgyB1091
Carg03853	Cucurbita maxima (Rimu)	carcmaB1349
Carg03853	Cucurbita maxima (Rimu)	carcmaB1356
Carg03853	Cucurbita moschata (Rifu)	carcmoB1310
Carg03853	Cucurbita moschata (Rifu)	carcmoB1318
Carg03853	Cucurbita pepo (Zucchini)	carcpeB1351
Carg03853	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03853	Wild cucumber (PI 183967)	carcpiB1010
Carg03853	Cucumber (Chinese Long) v2	carcuB0987
Carg03853	Cucumber (Chinese Long) v3	carcucB1015
Carg03853	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03853	Melon (DHL92) v3.5.1	carmeB0955
Carg03853	Melon (DHL92) v3.6.1	carmedB0961
Carg03853	Watermelon (Charleston Gray)	carwcgB0958
Carg03853	Watermelon (97103) v1	carwmB0978
Carg03853	Watermelon (97103) v2	carwmbB1034
Carg03853	Wax gourd	carwgoB1147