Carg03839-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTAAATGATTGAATAGTAAGCGATAGCCTTGTTTCTGGACATATCCTCGCCGTTTCCTTCTTCAATCAATTTGTGGAGTTCAATAATTAATTGAAGGAAGATTCAATGGAGTTGCAGAAGTGAATTTGAGCTATAGTAATCAGTGTTTTCGATCTTAGCCAAAGGCACAGCAGCTTTCATCAATCTCACACTGACAAATTTGATCCGTTGCGCACTCCTAAGTCTGAATTCCTACTGTTTCCCTGCTTTCGTGGCCGAAGTTTTGTGCTAGGATACGCAATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGTAGGGAGATTTTATGATTTGTGCATTTCTCTATTGCTTTTCAGTTGATATAGAATCGGAAGTTGTGACAGAGTTCTGTGTTGTGGATTGCAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGGTTAG TTTCTAAATGATTGAATAGTAAGCGATAGCCTTGTTTCTGGACATATCCTCGCCGTTTCCTTCTTCAATCAATTTGTGGAGTTCAATAATTAATTGAAGGAAGATTCAATGGAGTTGCAGAAGTGAATTTGAGCTATAGTAATCAGTGTTTTCGATCTTAGCCAAAGGCACAGCAGCTTTCATCAATCTCACACTGACAAATTTGATCCGTTGCGCACTCCTAAGTCTGAATTCCTACTGTTTCCCTGCTTTCGTGGCCGAAGTTTTGTGCTAGGATACGCAATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGGTTAG ATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGGTTAG MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALAG
BLAST of Carg03839-RA vs. NCBI nr
Match: XP_022951960.1 (ultraviolet-B receptor UVR8 [Cucurbita moschata] >XP_022951961.1 ultraviolet-B receptor UVR8 [Cucurbita moschata] >XP_022951962.1 ultraviolet-B receptor UVR8 [Cucurbita moschata]) HSP 1 Score: 168.7 bits (426), Expect = 8.9e-39 Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Carg03839-RA vs. NCBI nr
Match: XP_023002287.1 (ultraviolet-B receptor UVR8 [Cucurbita maxima] >XP_023002288.1 ultraviolet-B receptor UVR8 [Cucurbita maxima] >XP_023002289.1 ultraviolet-B receptor UVR8 [Cucurbita maxima]) HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Carg03839-RA vs. NCBI nr
Match: XP_023537385.1 (ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023537386.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023537387.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Carg03839-RA vs. NCBI nr
Match: XP_004148391.2 (PREDICTED: ultraviolet-B receptor UVR8 [Cucumis sativus] >KGN62812.1 hypothetical protein Csa_2G373550 [Cucumis sativus]) HSP 1 Score: 142.9 bits (359), Expect = 5.3e-31 Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of Carg03839-RA vs. NCBI nr
Match: XP_008445010.1 (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo]) HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Carg03839-RA vs. TAIR10
Match: AT5G11580.1 (Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 97.8 bits (242), Expect = 3.5e-21 Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of Carg03839-RA vs. TAIR10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Carg03839-RA vs. TAIR10
Match: AT3G53830.1 (Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08 Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 0
BLAST of Carg03839-RA vs. TAIR10
Match: AT3G02510.1 (Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08 Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 0
BLAST of Carg03839-RA vs. TAIR10
Match: AT5G16040.1 (Regulator of chromosome condensation (RCC1) family protein) HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08 Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of Carg03839-RA vs. Swiss-Prot
Match: sp|O95714|HERC2_HUMAN (E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2) HSP 1 Score: 58.9 bits (141), Expect = 3.3e-08 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of Carg03839-RA vs. Swiss-Prot
Match: sp|Q4U2R1|HERC2_MOUSE (E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3) HSP 1 Score: 58.9 bits (141), Expect = 3.3e-08 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of Carg03839-RA vs. Swiss-Prot
Match: sp|Q9FN03|UVR8_ARATH (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 7.3e-08 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Carg03839-RA vs. Swiss-Prot
Match: sp|Q15751|HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 8.0e-07 Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0
BLAST of Carg03839-RA vs. Swiss-Prot
Match: sp|O95199|RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens OX=9606 GN=RCBTB2 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06 Identity = 28/78 (35.90%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of Carg03839-RA vs. TrEMBL
Match: tr|A0A0A0LPS2|A0A0A0LPS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373550 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.5e-31 Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0
BLAST of Carg03839-RA vs. TrEMBL
Match: tr|A0A1S3BCG0|A0A1S3BCG0_CUCME (ultraviolet-B receptor UVR8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488178 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 7.7e-31 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Carg03839-RA vs. TrEMBL
Match: tr|A0A251RFA8|A0A251RFA8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G447800 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 7.0e-24 Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of Carg03839-RA vs. TrEMBL
Match: tr|A0A1U8P3I6|A0A1U8P3I6_GOSHI (ultraviolet-B receptor UVR8 OS=Gossypium hirsutum OX=3635 GN=LOC107953844 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23 Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Carg03839-RA vs. TrEMBL
Match: tr|A0A0D2PKW1|A0A0D2PKW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G026900 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23 Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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