Carg03616-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03616-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CSL zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_006 : 1015115 .. 1017268 (+)
Sequence length	1059

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGTTAACCCGACGAGGGAATCTCTTTCTGCTTCCCAATGAAGTTTGACTCCGACGATCCCCGTTGAAAGCTTCTGTGGCGGTTTTTCTTTGGCAGAAATTTCCATTTCCAAGCTTTAGTTTCCAATTCGACCATGGCGATTTCCGATCTATCACCGTTGTCCTTCGTGCTGCTTCTGTTGGTGACGGCGGTGGTTGTCGAAGCTAGGGACAACAACCGAGTTTTCTCACCTTGTATTGACACGACTGTTGAGAAGTCCGACGGGTTCACCTTAGGGCTTGCTTTTGCGACGGAGCAGAAGTTCGTCTTCAATAAAACATTGAAGTTGTCTCCTTGTGACAGCAGGCTCGCTCTTACGAATGGAAATGCTCTGATCTCTGTGTTTAGACCTAAGGTTGATGAGATCTCCCTCCTCACCGTCAACACTACTCCGTCTGTGTCCTCCTTCAATCCGGTTAGTTTTTCGAACTCTATGTTCTTTGTTGATGTCGAATCTATGGATTTTCTGTTTTCTCTTCGTTTGAGATTGAAAGTAGTTCTAATTAGGTTTTGTGCGTGAATTTGTCTAATTATCGGTAGTTTTTGTGGGATTGGAGTAATAGGTTTGTAAGAGGGAGGCATACAGAACAGATCCTTATGGAATCACTTTGCTTACTTAGAATGCGTGATGCTAGCCGATTTGATATGGGATTTTTTGGTTTGTTAATTGTTCTTTTGAGGGAAATCAGTAATCAATCATTTGATTGACATTCTGCACGATCCAATTTGAACAAGAAACTCAAATGTTGATCTCTATATGGAAAAAGGAAGAACTTCACTGAAGATGGTATCAAGATGTTTTACTCTTTGGTTGATGTTTGACAGAGTAGATATTCCCCTTCCCTCTTCCGCTTTAAGATGATATCATACTTATTAATCTTTGCTAGCTCGATTTTAATTGCTCACATAAATCTAACATTTTACTTCAATATTCTAGTTGTCCGTTCACTCCAGTCGTGGACTCATGATTTTGTTTTCTTTTCATTCAGTCTTCACATGGCTATATGGTTGCATTTGCTGGTCGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCTCAGATGGACAACATATCGTAACCAGCTTTACTCTGGTAAGTTTATGACATAGAAAGTAGGAAGTAAACTAAAGGCACAAGACATGGACACAATACTACACTGACTTGGTGATATATTTATAAGAATTCAATGGACATATGTAACAAATTACCTTTGCTGTGAAATGTAAGAGATAGCAATTGAAAAACTATGGAATAAGGTCGTCATAATATGACAATCTTCAATATTTTGTAGTTTTTTTTATGTGAATGGGTAGGCTTTGTTGAGGATTGTTGGGAGGGAGTCCAATATTGGGTAATTAAGAGGATGATCATGCGTTAATAAGTAAGGAACACTATCTCCATTGGTATGAGACCTTTTGGGGAAACCAAAAGCAAAGCCATGAAAGTTTATGCTGAAAGTAGACAATATCATACTATTGTGGAGAGTCGTGGTTCCTAACCGACTTCATTTATATAGCAAGTCATGTGAGTTTTAATCTTTGAGTAGTGTCTGTGCATACTAACTTATGACAGTCCATTGGGTAACAAATCCATCAATTTTTCTCGGTGTATAGGTGCTCGAGTTTGAGAAAGGCAGGCTGCAAAACTTGTTCTGGAAAAGAGATGGTTGTGCTCGATGTTCAAACAACCATACCTTTGTTTGCATCAACAATCAGGATTGTGCAATCAGAACAAACAACTGCAAAAATAGTGGTCCTGTCGATTGCAGCCTTGCGATACAGTTAGCGTTCTCTGGCACAGATAAGCACCTTTCTGTCTTCAACTCTTGGTATGAAGTGTCGAGACTTCGGCAATACTCACTCGTCGATCTATATTCGAACCTCAAAGATTCTCTCACAAGTCAGTATAACAAGATCTTCCAATAAAGCATATTTTTGTTAATGTATATTTCATTTCCATCCTTGTAACTTGGTTTGTGCTACGAATTCCTTTCAAATCTTGTGCATTTTTCGTCAATTAAATGTGTGACAATAGGGGCGGTACTAGTGTTGTATGTATCACGAACTCCTGGTTAAATGTAATACAAAATCATAGCGTTGAATTGCTTCTCT

mRNA sequence

TATTGTTAACCCGACGAGGGAATCTCTTTCTGCTTCCCAATGAAGTTTGACTCCGACGATCCCCGTTGAAAGCTTCTGTGGCGGTTTTTCTTTGGCAGAAATTTCCATTTCCAAGCTTTAGTTTCCAATTCGACCATGGCGATTTCCGATCTATCACCGTTGTCCTTCGTGCTGCTTCTGTTGGTGACGGCGGTGGTTGTCGAAGCTAGGGACAACAACCGAGTTTTCTCACCTTGTATTGACACGACTGTTGAGAAGTCCGACGGGTTCACCTTAGGGCTTGCTTTTGCGACGGAGCAGAAGTTCGTCTTCAATAAAACATTGAAGTTGTCTCCTTGTGACAGCAGGCTCGCTCTTACGAATGGAAATGCTCTGATCTCTGTGTTTAGACCTAAGGTTGATGAGATCTCCCTCCTCACCGTCAACACTACTCCGTCTGTGTCCTCCTTCAATCCGTCTTCACATGGCTATATGGTTGCATTTGCTGGTCGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCTCAGATGGACAACATATCGTAACCAGCTTTACTCTGGTGCTCGAGTTTGAGAAAGGCAGGCTGCAAAACTTGTTCTGGAAAAGAGATGGTTGTGCTCGATGTTCAAACAACCATACCTTTGTTTGCATCAACAATCAGGATTGTGCAATCAGAACAAACAACTGCAAAAATAGTGGTCCTGTCGATTGCAGCCTTGCGATACAGTTAGCGTTCTCTGGCACAGATAAGCACCTTTCTGTCTTCAACTCTTGGTATGAAGTGTCGAGACTTCGGCAATACTCACTCGTCGATCTATATTCGAACCTCAAAGATTCTCTCACAAGTCAGTATAACAAGATCTTCCAATAAAGCATATTTTTGTTAATGTATATTTCATTTCCATCCTTGTAACTTGGTTTGTGCTACGAATTCCTTTCAAATCTTGTGCATTTTTCGTCAATTAAATGTGTGACAATAGGGGCGGTACTAGTGTTGTATGTATCACGAACTCCTGGTTAAATGTAATACAAAATCATAGCGTTGAATTGCTTCTCT

Coding sequence (CDS)

ATGGCGATTTCCGATCTATCACCGTTGTCCTTCGTGCTGCTTCTGTTGGTGACGGCGGTGGTTGTCGAAGCTAGGGACAACAACCGAGTTTTCTCACCTTGTATTGACACGACTGTTGAGAAGTCCGACGGGTTCACCTTAGGGCTTGCTTTTGCGACGGAGCAGAAGTTCGTCTTCAATAAAACATTGAAGTTGTCTCCTTGTGACAGCAGGCTCGCTCTTACGAATGGAAATGCTCTGATCTCTGTGTTTAGACCTAAGGTTGATGAGATCTCCCTCCTCACCGTCAACACTACTCCGTCTGTGTCCTCCTTCAATCCGTCTTCACATGGCTATATGGTTGCATTTGCTGGTCGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCTCAGATGGACAACATATCGTAACCAGCTTTACTCTGGTGCTCGAGTTTGAGAAAGGCAGGCTGCAAAACTTGTTCTGGAAAAGAGATGGTTGTGCTCGATGTTCAAACAACCATACCTTTGTTTGCATCAACAATCAGGATTGTGCAATCAGAACAAACAACTGCAAAAATAGTGGTCCTGTCGATTGCAGCCTTGCGATACAGTTAGCGTTCTCTGGCACAGATAAGCACCTTTCTGTCTTCAACTCTTGGTATGAAGTGTCGAGACTTCGGCAATACTCACTCGTCGATCTATATTCGAACCTCAAAGATTCTCTCACAAGTCAGTATAACAAGATCTTCCAATAA

Protein sequence

MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRKYAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIFQ

Homology

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BLAST of Carg03616-RA vs. NCBI nr
Match: XP_022935582.1 (uncharacterized protein LOC111442414 [Cucurbita moschata])

HSP 1 Score: 491.1 bits (1263), Expect = 2.2e-135
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN
Sbjct: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK
Sbjct: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI
Sbjct: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180

Query: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQY 240
           RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQY
Sbjct: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQY 240

Query: 241 NKIFQ 246
           NKIFQ
Sbjct: 241 NKIFQ 245

[Close]

BLAST of Carg03616-RA vs. NCBI nr
Match: XP_022983083.1 (uncharacterized protein LOC111481736 [Cucurbita maxima])

HSP 1 Score: 486.1 bits (1250), Expect = 7.0e-134
Identity = 242/245 (98.78%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN
Sbjct: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVS+FNPSS+GYMVAFAGRK
Sbjct: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSTFNPSSNGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI
Sbjct: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180

Query: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQY 240
           RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSLVDLYSNLKDSLTSQY
Sbjct: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLVDLYSNLKDSLTSQY 240

Query: 241 NKIFQ 246
           NKIFQ
Sbjct: 241 NKIFQ 245

[Close]

BLAST of Carg03616-RA vs. NCBI nr
Match: XP_023528901.1 (uncharacterized protein LOC111791684 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.7 bits (1249), Expect = 9.1e-134
Identity = 242/245 (98.78%), Postives = 244/245 (99.59%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAISDLSPLSFVLLLLVT VVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN
Sbjct: 1   MAISDLSPLSFVLLLLVTVVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSS+GYMVAFAGRK
Sbjct: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSNGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI
Sbjct: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180

Query: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQY 240
           RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSLVDLYSNLKDSLTSQY
Sbjct: 181 RTNNCKNSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLVDLYSNLKDSLTSQY 240

Query: 241 NKIFQ 246
           NKIFQ
Sbjct: 241 NKIFQ 245

[Close]

BLAST of Carg03616-RA vs. NCBI nr
Match: XP_023538924.1 (uncharacterized protein LOC111799707 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.3 bits (1118), Expect = 1.4e-118
Identity = 219/246 (89.02%), Postives = 230/246 (93.50%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAI DLS  S VLLLL+TA  VEARD+NRVFSPC DTTVEKSDGFTLGLAFAT QKFVFN
Sbjct: 1   MAIYDLSRASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATHQKFVFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTL LSPCDSRLALTNGN+LISVFRP VDEISLLTVNTTPSVS+FNPSS+GYMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFV+D QH VTSFTLVLEFEKGRLQNLFWKRDGCA+CSNN+TFVCINNQDCAI
Sbjct: 121 YAARSPPIFVADEQHAVTSFTLVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAI 180

Query: 181 RTNNCK-NSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQ 240
           RT+NCK   GPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSL +LYSNLKDSLTSQ
Sbjct: 181 RTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQ 240

Query: 241 YNKIFQ 246
           YNKIFQ
Sbjct: 241 YNKIFQ 246

[Close]

BLAST of Carg03616-RA vs. NCBI nr
Match: XP_022939140.1 (uncharacterized protein LOC111445105 [Cucurbita moschata])

HSP 1 Score: 434.1 bits (1115), Expect = 3.1e-118
Identity = 218/246 (88.62%), Postives = 230/246 (93.50%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAI DLS  S VLLLL+TA  VEARD+NRVFSPC DTTVEKSDGFTLGLAFAT+QKFVFN
Sbjct: 1   MAIYDLSTASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATQQKFVFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTL LSPCDSRLALTNGN+LIS+FRP VDEISLLTVNTTPSVS+FNPSS+ YMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISMFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFV+D QH VTSFTLVLEFEKGRLQNLFWKRDGCA+CSNN+TFVCINNQDCAI
Sbjct: 121 YAARSPPIFVADEQHAVTSFTLVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAI 180

Query: 181 RTNNCK-NSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQ 240
           RT+NCK   GPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSL +LYSNLKDSLTSQ
Sbjct: 181 RTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFNLYSNLKDSLTSQ 240

Query: 241 YNKIFQ 246
           YNKIFQ
Sbjct: 241 YNKIFQ 246

[Close]

BLAST of Carg03616-RA vs. TAIR10
Match: AT3G11800.1 (unknown protein)

HSP 1 Score: 293.9 bits (751), Expect = 9.2e-80
Identity = 145/234 (61.97%), Postives = 182/234 (77.78%), Query Frame = 0


Query: 16  LVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVF---NKTLKLSPCDSRL 75
           ++T+ + EA DNN+V+SPC D+TV   DGFT G+AFA +  F     +K+++ SPCD R 
Sbjct: 14  VLTSSLTEAGDNNQVYSPCSDSTVAIGDGFTFGIAFAAKDSFFSTNRSKSVQYSPCDHRH 73

Query: 76  ALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNP-SSHGYMVAFAGRKYAARSPPIFVS 135
              NGN+ ++VFRPKVDEI+LLT+NT+ S SSF P +S GYMVAFAG KYAARS PI V+
Sbjct: 74  LSLNGNSEVAVFRPKVDEITLLTINTSSS-SSFRPDASKGYMVAFAGAKYAARSLPIMVA 133

Query: 136 DGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCKN-SGP 195
           D  HIVTSFTLVLEF+KGRL+N+FWK+DGC++CS +  FVC+N ++CAI+  NCKN  G 
Sbjct: 134 DSNHIVTSFTLVLEFQKGRLENMFWKKDGCSKCSGDSKFVCLNKEECAIKPQNCKNQGGQ 193

Query: 196 VDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIF 245
           VDCSL IQLAFSGTDKH +  NSWYEV+ L+QYSL  LYSNLKDSLT+ +  IF
Sbjct: 194 VDCSLGIQLAFSGTDKHYTALNSWYEVANLKQYSLYGLYSNLKDSLTNPFKNIF 246

[Close]

BLAST of Carg03616-RA vs. TAIR10
Match: AT3G44150.1 (unknown protein)

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-79
Identity = 141/221 (63.80%), Postives = 172/221 (77.83%), Query Frame = 0


Query: 26  DNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSRLALTNGNALISVFR 85
           + N ++SPC DT +++SDGFT G+AF++   F  N+T+ LSPCD RL+L   N+  SVFR
Sbjct: 30  NTNTIYSPCSDTRIQRSDGFTFGIAFSSRPSFFINQTVLLSPCDRRLSLAAMNSQFSVFR 89

Query: 86  PKVDEISLLTVNTTPSVSSFNPSSH-GYMVAFAGRKYAARSPPIFVSDGQHIVTSFTLVL 145
           PK+DEISLL++NT    S+F P ++ GYMVAFAGRKYAARS P F+++   IVTSFTLV+
Sbjct: 90  PKIDEISLLSINT----SAFFPDNYGGYMVAFAGRKYAARSIPAFIANSTFIVTSFTLVM 149

Query: 146 EFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCK-NSGPVDCSLAIQLAFSG 205
           EF+KGRLQNL+WKRDGCA C  N  FVC+N QDCAIRT +CK   G VDCSL IQLAFSG
Sbjct: 150 EFQKGRLQNLYWKRDGCASCKGNQNFVCLNKQDCAIRTPSCKGRGGAVDCSLGIQLAFSG 209

Query: 206 TDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIF 245
           TDKHL+V NSWYEV  L+QYSL  LYSNLK SLT+Q+N  F
Sbjct: 210 TDKHLAVLNSWYEVENLKQYSLYGLYSNLKSSLTNQFNNFF 246

[Close]

BLAST of Carg03616-RA vs. TAIR10
Match: AT2G15910.1 (CSL zinc finger domain-containing protein)

HSP 1 Score: 232.3 bits (591), Expect = 3.3e-61
Identity = 121/229 (52.84%), Postives = 162/229 (70.74%), Query Frame = 0


Query: 22  VEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSRLALTNGNALI 81
           V A DNN V+SPC DT + K DGFT+G+A ++++ F F   ++LSPCD+RL L    A +
Sbjct: 140 VGAADNNPVYSPCSDTQISKGDGFTIGIAISSKEAF-FLDQVQLSPCDTRLGLAAKMAQL 199

Query: 82  SVFRPKVDEISLLTVNTTPSVSSFNPS-SHGYMVAFAGRKYAARSPPIFVSDGQHIVTSF 141
           ++FRPKVDEISLL+++T    S FNPS + G+MV FAG KYAARS P+ V+DG + +T+F
Sbjct: 200 ALFRPKVDEISLLSIDT----SKFNPSEAGGFMVGFAGSKYAARSYPVKVADGSNTITAF 259

Query: 142 T---------LVLEFEKGRLQNLFWKRDGCARC--SNNHTFVCINNQDCAIRTNNCK-NS 201
           T         LVLEF+KG LQNLFWK  GC  C  + + + VC+N  DCA+ T+ CK N 
Sbjct: 260 TLVMKLTLSPLVLEFQKGVLQNLFWKSFGCDLCKGTGSSSSVCLNGTDCAVPTSKCKANG 319

Query: 202 GPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLT 238
           G  +C++ IQ+AFSGTD++L   N+WYEV+ LRQYSL DLY+N  DSL+
Sbjct: 320 GQANCNIGIQVAFSGTDRNLESLNTWYEVNNLRQYSLTDLYANAVDSLS 363

[Close]

BLAST of Carg03616-RA vs. TAIR10
Match: AT3G48630.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-10
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 112 YMVAFAGRKYAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCAR 164
           Y V   G +  +   P F+++   IVTSFT V+EF+KGRLQNL+WKRD CA+
Sbjct: 2   YNVGTRGSEIRSEVDPAFIANSTFIVTSFTWVMEFQKGRLQNLYWKRDVCAK 53

[Close]

BLAST of Carg03616-RA vs. TrEMBL
Match: tr|A0A0A0LGU1|A0A0A0LGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782730 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.8e-117
Identity = 217/245 (88.57%), Postives = 230/245 (93.88%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAIS LSP S VL+LLVTAVV+EA DNNRVFSPC DTTVE SDGFTLG AFATEQKF FN
Sbjct: 1   MAISYLSPASGVLILLVTAVVIEASDNNRVFSPCTDTTVENSDGFTLGFAFATEQKFFFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLT+NT+ SVSSF+PSS+GYMVAFAGRK
Sbjct: 61  KTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTINTSRSVSSFDPSSNGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFV+D QHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNN TFVCI+NQDCAI
Sbjct: 121 YAARSPPIFVADQQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNSTFVCIHNQDCAI 180

Query: 181 RTNNCKNS-GPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQ 240
           RTN+CKN+ G VDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSL +LYSNLKDSLTSQ
Sbjct: 181 RTNSCKNNGGSVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFNLYSNLKDSLTSQ 240

Query: 241 YNKIF 245
           YNKIF
Sbjct: 241 YNKIF 245

[Close]

BLAST of Carg03616-RA vs. TrEMBL
Match: tr|A0A1S3B6Y8|A0A1S3B6Y8_CUCME (uncharacterized protein LOC103486692 OS=Cucumis melo OX=3656 GN=LOC103486692 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 7.4e-116
Identity = 215/245 (87.76%), Postives = 230/245 (93.88%), Query Frame = 0


Query: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60
           MAIS  SP S VL+LLVTAV+VEA DNNRVFSPC DTTVE SDGFTLG AFAT+QKF FN
Sbjct: 1   MAISYPSPASAVLILLVTAVLVEAGDNNRVFSPCTDTTVETSDGFTLGFAFATQQKFFFN 60

Query: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120
           KTL+LSPCDSRL LTNGN+LISVFRPKVDEISLLTVNT+ SVSSF+PSS+GYMVAFAGRK
Sbjct: 61  KTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSRSVSSFDPSSNGYMVAFAGRK 120

Query: 121 YAARSPPIFVSDGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAI 180
           YAARSPPIFV+D QHIVTSFTLVLEFEKGRLQNLFWKRDGCA+CSNN+TFVCI+NQDCAI
Sbjct: 121 YAARSPPIFVADQQHIVTSFTLVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCIHNQDCAI 180

Query: 181 RTNNCKNS-GPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQ 240
           RTN+CKN+ G VDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSL +LYSNLKDSLTSQ
Sbjct: 181 RTNSCKNNGGSVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFNLYSNLKDSLTSQ 240

Query: 241 YNKIF 245
           YNKIF
Sbjct: 241 YNKIF 245

[Close]

BLAST of Carg03616-RA vs. TrEMBL
Match: tr|A0A2I4FY72|A0A2I4FY72_9ROSI (uncharacterized protein LOC109003077 OS=Juglans regia OX=51240 GN=LOC109003077 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86
Identity = 162/234 (69.23%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 12  VLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSR 71
           ++ + + A+ V A DNNRV+SPC+DTTV +SDGFT  +AFA    F +N TL+LSPCDSR
Sbjct: 8   MMAVALLALSVGASDNNRVYSPCLDTTVARSDGFTFAIAFAARNSFFYNNTLQLSPCDSR 67

Query: 72  LALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRKYAARSPPIFVS 131
           L L++ N+ I++FRPKVDEISLLTVN+    SSF P S+GYMVAFAGRKYAARS P FV+
Sbjct: 68  LGLSS-NSQIALFRPKVDEISLLTVNS----SSFTPDSYGYMVAFAGRKYAARSTPAFVA 127

Query: 132 DGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCK-NSGP 191
           +  + VTSFTLVLEF+KGRLQNL+WKRDGCA+CS N  FVC+NNQDCAI+T++CK + G 
Sbjct: 128 NSSYTVTSFTLVLEFQKGRLQNLYWKRDGCAKCSGNSNFVCLNNQDCAIKTSSCKIHGGT 187

Query: 192 VDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIF 245
           VDCSL IQLAFSGTDKHLS  NSWYEV  LRQYSL  LYSNLKDSLTSQY+KIF
Sbjct: 188 VDCSLGIQLAFSGTDKHLSALNSWYEVENLRQYSLYGLYSNLKDSLTSQYDKIF 236

[Close]

BLAST of Carg03616-RA vs. TrEMBL
Match: tr|A0A2N9IT14|A0A2N9IT14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.6e-86
Identity = 160/222 (72.07%), Postives = 182/222 (81.98%), Query Frame = 0


Query: 24   ARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSRLALTNGNALISV 83
            A DNN VFSPC+DTTV +SDGFTLG+AFA    F  N TL+LSPCD+RL L++ N+ I++
Sbjct: 1246 ASDNNGVFSPCLDTTVARSDGFTLGIAFALRTSFFINTTLQLSPCDTRLRLSSSNSQIAL 1305

Query: 84   FRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRKYAARSPPIFVSDGQHIVTSFTLV 143
            FRPKVDEISLLTVN+    SSFNP + G+MVAFAGRKYAARSPP FV++    VTSFTLV
Sbjct: 1306 FRPKVDEISLLTVNS----SSFNPDTLGFMVAFAGRKYAARSPPAFVANSTFTVTSFTLV 1365

Query: 144  LEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCKN-SGPVDCSLAIQLAFS 203
            LEF+KGRLQNL+WKRDGC  CS N  FVC+NNQDCAI+TNNCKN  G VDCSL IQLAFS
Sbjct: 1366 LEFQKGRLQNLYWKRDGCNGCSGNTNFVCLNNQDCAIKTNNCKNHGGTVDCSLGIQLAFS 1425

Query: 204  GTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIF 245
            GTDKHLS  NSWYEV+ LRQYSL  +YSNLKDSLTSQY+  F
Sbjct: 1426 GTDKHLSALNSWYEVANLRQYSLYGVYSNLKDSLTSQYSNFF 1463

[Close]

BLAST of Carg03616-RA vs. TrEMBL
Match: tr|A0A2I4H4U4|A0A2I4H4U4_9ROSI (uncharacterized protein LOC109013515 OS=Juglans regia OX=51240 GN=LOC109013515 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85
Identity = 161/234 (68.80%), Postives = 191/234 (81.62%), Query Frame = 0


Query: 12  VLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFNKTLKLSPCDSR 71
           + ++ + AV V A DNNR+ SPC DTTV +SDGFT  +AFA+   F++N TL+LSPCDSR
Sbjct: 9   ITMMAMAAVFVGASDNNRIHSPCSDTTVARSDGFTFAIAFASRNSFLYNSTLQLSPCDSR 68

Query: 72  LALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRKYAARSPPIFVS 131
           L L++  + I++FRPKVDEISLLTVN+    SSF P S+GYMVAFAGRKYAARS P FV+
Sbjct: 69  LHLSS-KSQIALFRPKVDEISLLTVNS----SSFTPDSYGYMVAFAGRKYAARSVPTFVA 128

Query: 132 DGQHIVTSFTLVLEFEKGRLQNLFWKRDGCARCSNNHTFVCINNQDCAIRTNNCKNSG-P 191
           +  + VTSFTLVLEF+KGRLQNL+WKRDGC++CS N  FVC+NNQ CAI+T++CKN G  
Sbjct: 129 NSSYTVTSFTLVLEFQKGRLQNLYWKRDGCSKCSGNSNFVCLNNQHCAIKTSSCKNHGST 188

Query: 192 VDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVDLYSNLKDSLTSQYNKIF 245
           VDCSL IQLAFSGTDKHLS  NSWYEV +LRQYSL  LYSNLKDSLTSQYNKIF
Sbjct: 189 VDCSLGIQLAFSGTDKHLSALNSWYEVEKLRQYSLYGLYSNLKDSLTSQYNKIF 237

The following BLAST results are available for this feature:

BLAST of Carg03616-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935582.1	2.2e-135	100.00	uncharacterized protein LOC111442414 [Cucurbita moschata]	[more]
XP_022983083.1	7.0e-134	98.78	uncharacterized protein LOC111481736 [Cucurbita maxima]	[more]
XP_023528901.1	9.1e-134	98.78	uncharacterized protein LOC111791684 [Cucurbita pepo subsp. pepo]	[more]
XP_023538924.1	1.4e-118	89.02	uncharacterized protein LOC111799707 [Cucurbita pepo subsp. pepo]	[more]
XP_022939140.1	3.1e-118	88.62	uncharacterized protein LOC111445105 [Cucurbita moschata]	[more]

BLAST of Carg03616-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11800.1	9.2e-80	61.97	unknown protein	[more]
AT3G44150.1	2.7e-79	63.80	unknown protein	[more]
AT2G15910.1	3.3e-61	52.84	CSL zinc finger domain-containing protein	[more]
AT3G48630.1	4.5e-10	51.92	unknown protein	[more]

BLAST of Carg03616-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03616-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGU1\|A0A0A0LGU1_CUCSA	1.8e-117	88.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782730 PE=4 SV=1	[more]
tr\|A0A1S3B6Y8\|A0A1S3B6Y8_CUCME	7.4e-116	87.76	uncharacterized protein LOC103486692 OS=Cucumis melo OX=3656 GN=LOC103486692 PE=...	[more]
tr\|A0A2I4FY72\|A0A2I4FY72_9ROSI	2.1e-86	69.23	uncharacterized protein LOC109003077 OS=Juglans regia OX=51240 GN=LOC109003077 P...	[more]
tr\|A0A2N9IT14\|A0A2N9IT14_FAGSY	3.6e-86	72.07	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1	[more]
tr\|A0A2I4H4U4\|A0A2I4H4U4_9ROSI	1.0e-85	68.80	uncharacterized protein LOC109013515 OS=Juglans regia OX=51240 GN=LOC109013515 P...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03616	Carg03616	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03616-RA	Carg03616-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03616-RA.exon.1	Carg03616-RA.exon.1	exon
Carg03616-RA.exon.2	Carg03616-RA.exon.2	exon
Carg03616-RA.exon.3	Carg03616-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03616-RA.five_prime_UTR.1	Carg03616-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03616-RA.CDS.1	Carg03616-RA.CDS.1	CDS
Carg03616-RA.CDS.2	Carg03616-RA.CDS.2	CDS
Carg03616-RA.CDS.3	Carg03616-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03616-RA.three_prime_UTR.1	Carg03616-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21454	FAMILY NOT NAMED	coord: 10..244
None	No IPR available	PANTHER	PTHR21454:SF20	SUBFAMILY NOT NAMED	coord: 10..244