Carg03316-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03316-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CAX-interacting protein 4
Location	Cucurbita_argyrosperma_scaffold_005 : 1217589 .. 1218545 (-)
Sequence length	957

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

mRNA sequence

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

Coding sequence (CDS)

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

Protein sequence

MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAENAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQADVMSELDKLKGNIGKGNGKGAVESDEESEEEESESSDSDADSEIERIIAEREGKRTSKKRSLKRKDDLVDDGSGSDSREKKRGRSKRRSRRRESNDSDDSRRKRRKEKHRKRDDSSDEGETIKRRHRKSRKEKRRRRSHRYSDDSDSDTSEESHRRHKHKSRKTASLTDSEDSSSDDTRGRARKRSEKRSRKHRYEEDE

Homology

[Close]

BLAST of Carg03316-RA vs. NCBI nr
Match: XP_022943818.1 (CAX-interacting protein 4 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316-RA vs. NCBI nr
Match: XP_022986903.1 (CAX-interacting protein 4 [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316-RA vs. NCBI nr
Match: XP_023511989.1 (CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023511990.1 CAX-interacting protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316-RA vs. NCBI nr
Match: XP_022148397.1 (CAX-interacting protein 4 isoform X1 [Momordica charantia] >XP_022148398.1 CAX-interacting protein 4 isoform X1 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.3e-67
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQ NTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQPNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316-RA vs. NCBI nr
Match: XP_022148399.1 (CAX-interacting protein 4 isoform X2 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.3e-67
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQ NTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQPNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316-RA vs. TAIR10
Match: AT2G28910.1 (CAX interacting protein 4)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-50
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP   +   + QQ T     + E
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTSKEEPKTTQQKT----EDPE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N+YASFQGLLALARITGSN +E RG+CK+CGRVGHL+FQCRNFLS K DKEKDP AI+A 
Sbjct: 61  NSYASFQGLLALARITGSNNDEARGSCKKCGRVGHLTFQCRNFLSTKEDKEKDPGAIEAA 120

Query: 121 VMSELDKLKGNIGK 135
           V+S L+K++  +GK
Sbjct: 121 VLSGLEKIRRGVGK 130

[Close]

BLAST of Carg03316-RA vs. Swiss-Prot
Match: sp|Q84Y18|CXIP4_ARATH (CAX-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=CXIP4 PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 3.6e-49
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP   +   + QQ T     + E
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTSKEEPKTTQQKT----EDPE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N+YASFQGLLALARITGSN +E RG+CK+CGRVGHL+FQCRNFLS K DKEKDP AI+A 
Sbjct: 61  NSYASFQGLLALARITGSNNDEARGSCKKCGRVGHLTFQCRNFLSTKEDKEKDPGAIEAA 120

Query: 121 VMSELDKLKGNIGK 135
           V+S L+K++  +GK
Sbjct: 121 VLSGLEKIRRGVGK 130

[Close]

BLAST of Carg03316-RA vs. Swiss-Prot
Match: sp|Q3B7G7|SR1IP_DANRE (Protein SREK1IP1 OS=Danio rerio OX=7955 GN=srek1ip1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.7e-04
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 77  GSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           G N + +R  CKRCG  GHL+F+CRNFL V  D  KD
Sbjct: 5   GPNKDNIRAGCKRCGYPGHLTFECRNFLRV--DPRKD 39

[Close]

BLAST of Carg03316-RA vs. Swiss-Prot
Match: sp|Q8N9Q2|SR1IP_HUMAN (Protein SREK1IP1 OS=Homo sapiens OX=9606 GN=SREK1IP1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-04
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 75  ITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           + G N + VR  CK+CG  GHL+F+CRNFL V  D ++D
Sbjct: 3   VPGCNKDSVRAGCKKCGYPGHLTFECRNFLRV--DPKRD 39

[Close]

BLAST of Carg03316-RA vs. Swiss-Prot
Match: sp|Q28EE8|SR1IP_XENTR (Protein SREK1IP1 OS=Xenopus tropicalis OX=8364 GN=srek1ip1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.0e-04
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 75  ITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           + G N + +R  CK+CG  GHL+F+CRNFL V  D ++D
Sbjct: 3   VPGVNKDNIRAGCKKCGYPGHLTFECRNFLRV--DPQRD 39

[Close]

BLAST of Carg03316-RA vs. TrEMBL
Match: tr|A0A1S3CL87|A0A1S3CL87_CUCME (CAX-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103502085 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.1e-66
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQQNTASSEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQQNTASSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKG  GK
Sbjct: 121 VMSELDKLKGGKGK 134

[Close]

BLAST of Carg03316-RA vs. TrEMBL
Match: tr|A0A0A0KHA7|A0A0A0KHA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190420 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.9e-65
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK++AQQNTASSEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNAAQQNTASSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKG 131
           VMSELDKLKG
Sbjct: 121 VMSELDKLKG 130

[Close]

BLAST of Carg03316-RA vs. TrEMBL
Match: tr|F6GV10|F6GV10_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g04730 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 115/134 (85.82%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDD K+S+Q  +++SEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDAKNSSQPKSSNSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNA+E RGACK+CGRVGHL+FQCRNFLS+K+DKEKDP+AIQA 
Sbjct: 61  NAYASFQGLLALARITGSNADETRGACKKCGRVGHLTFQCRNFLSIKDDKEKDPDAIQAS 120

Query: 121 VMSELDKLKGNIGK 135
           V+S LDKLKGN+GK
Sbjct: 121 VLSGLDKLKGNVGK 134

[Close]

BLAST of Carg03316-RA vs. TrEMBL
Match: tr|M5WBW2|M5WBW2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G077300 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 115/134 (85.82%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNK+DNK+SAQ N ++SEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKEDNKTSAQPNLSNSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNA+E RGACKRCGRVGHL+FQCRNFLSVK DK+KDP+AIQAD
Sbjct: 61  NAYASFQGLLALARITGSNADEARGACKRCGRVGHLNFQCRNFLSVKEDKDKDPDAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           V SEL KLK  +G+
Sbjct: 121 VASELGKLKRKLGR 134

[Close]

BLAST of Carg03316-RA vs. TrEMBL
Match: tr|A0A2P6QIN9|A0A2P6QIN9_ROSCH (Putative transcription factor interactor and regulator CCHC(Zn) family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0064541 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP K++ KSS+Q N A+SEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTKEEGKSSSQVNLANSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N YASFQGLLALARITGSNA+E RGACKRCGRVGHLSFQCRNFLSVK DKEKDPEAIQAD
Sbjct: 61  NPYASFQGLLALARITGSNADEARGACKRCGRVGHLSFQCRNFLSVKEDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           V SEL KL+G +GK
Sbjct: 121 VASELSKLRGKLGK 134

The following BLAST results are available for this feature:

BLAST of Carg03316-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943818.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita moschata]	[more]
XP_022986903.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita maxima]	[more]
XP_023511989.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023511990.1 CAX-inter...	[more]
XP_022148397.1	3.3e-67	98.51	CAX-interacting protein 4 isoform X1 [Momordica charantia] >XP_022148398.1 CAX-i...	[more]
XP_022148399.1	3.3e-67	98.51	CAX-interacting protein 4 isoform X2 [Momordica charantia]	[more]

BLAST of Carg03316-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28910.1	2.0e-50	72.39	CAX interacting protein 4	[more]

BLAST of Carg03316-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84Y18\|CXIP4_ARATH	3.6e-49	72.39	CAX-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=CXIP4 PE=1 SV=2	[more]
sp\|Q3B7G7\|SR1IP_DANRE	2.7e-04	56.76	Protein SREK1IP1 OS=Danio rerio OX=7955 GN=srek1ip1 PE=2 SV=1	[more]
sp\|Q8N9Q2\|SR1IP_HUMAN	4.6e-04	51.28	Protein SREK1IP1 OS=Homo sapiens OX=9606 GN=SREK1IP1 PE=1 SV=1	[more]
sp\|Q28EE8\|SR1IP_XENTR	6.0e-04	48.72	Protein SREK1IP1 OS=Xenopus tropicalis OX=8364 GN=srek1ip1 PE=2 SV=1	[more]

BLAST of Carg03316-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CL87\|A0A1S3CL87_CUCME	3.1e-66	97.01	CAX-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103502085 PE=4 SV=1	[more]
tr\|A0A0A0KHA7\|A0A0A0KHA7_CUCSA	5.9e-65	97.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190420 PE=4 SV=1	[more]
tr\|F6GV10\|F6GV10_VITVI	1.7e-59	85.82	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g04730 PE=4 SV=...	[more]
tr\|M5WBW2\|M5WBW2_PRUPE	1.1e-58	85.82	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G077300 PE=4 SV=1	[more]
tr\|A0A2P6QIN9\|A0A2P6QIN9_ROSCH	1.4e-58	86.57	Putative transcription factor interactor and regulator CCHC(Zn) family OS=Rosa c...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03316	Carg03316	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03316-RA.CDS.1	Carg03316-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03316-RA.exon.1	Carg03316-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03316-RA	Carg03316-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 83..108 e-value: 1.4E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..318
None	No IPR available	PANTHER	PTHR31437	FAMILY NOT NAMED	coord: 6..266
None	No IPR available	PANTHER	PTHR31437:SF1	PROTEIN SREK1IP1	coord: 6..266
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 87..102 score: 8.96