Carg03316 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03316
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CAX-interacting protein 4
Location	Cucurbita_argyrosperma_scaffold_005 : 1217589 .. 1218545 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

mRNA sequence

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

Coding sequence (CDS)

ATGCCAGCCACAGCTGGAAGAGTTCGCATGCCTGCGAACAATAGGGTACACAGTAGTGCTGCCCTACAGACGCATGGTATATGGCAAAGTGCAATTGGGTATGACCCATATGCACCAAACAAGGATGATAACAAGAGTTCTGCACAACAAAACACAGCTAGCTCTGAACCAGAAGCAGAGAATGCATATGCTAGCTTTCAGGGTCTTCTTGCACTTGCTCGCATAACTGGTTCCAATGCCAATGAGGTTCGTGGTGCTTGCAAGAGGTGTGGACGTGTTGGACACCTTAGTTTTCAGTGTAGGAATTTTTTGAGTGTTAAGAATGATAAGGAGAAAGACCCAGAAGCTATCCAGGCTGATGTTATGTCGGAGCTGGATAAATTAAAAGGAAATATAGGTAAGGGAAATGGAAAAGGTGCAGTTGAGAGTGACGAGGAGAGTGAGGAGGAAGAGAGTGAAAGCTCTGACTCGGATGCTGATTCAGAGATTGAGAGGATTATTGCTGAAAGGGAAGGGAAAAGAACTAGTAAGAAACGGTCACTGAAAAGAAAGGATGATTTGGTTGATGATGGATCAGGTTCTGATTCAAGAGAGAAAAAGAGGGGGAGGTCAAAAAGGAGGAGCAGAAGAAGAGAATCCAATGACTCAGATGATAGCAGAAGGAAGAGGAGAAAGGAGAAGCACAGGAAAAGAGACGATTCATCAGATGAGGGAGAAACAATTAAGCGACGTCATAGGAAGAGTAGAAAAGAAAAGAGAAGGAGAAGAAGCCATAGGTATTCTGATGACTCGGATTCTGATACATCTGAGGAATCTCATCGAAGGCACAAACACAAGAGTCGGAAGACTGCATCGCTAACTGATTCTGAAGATAGCAGCTCTGATGATACAAGGGGCCGAGCGAGGAAGCGCTCTGAGAAGAGAAGCAGGAAACATCGTTACGAGGAGGATGAGTAG

Protein sequence

MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAENAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQADVMSELDKLKGNIGKGNGKGAVESDEESEEEESESSDSDADSEIERIIAEREGKRTSKKRSLKRKDDLVDDGSGSDSREKKRGRSKRRSRRRESNDSDDSRRKRRKEKHRKRDDSSDEGETIKRRHRKSRKEKRRRRSHRYSDDSDSDTSEESHRRHKHKSRKTASLTDSEDSSSDDTRGRARKRSEKRSRKHRYEEDE

Homology

[Close]

BLAST of Carg03316 vs. NCBI nr
Match: XP_022943818.1 (CAX-interacting protein 4 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316 vs. NCBI nr
Match: XP_022986903.1 (CAX-interacting protein 4 [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316 vs. NCBI nr
Match: XP_023511989.1 (CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023511990.1 CAX-interacting protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316 vs. NCBI nr
Match: XP_022148397.1 (CAX-interacting protein 4 isoform X1 [Momordica charantia] >XP_022148398.1 CAX-interacting protein 4 isoform X1 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.3e-67
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQ NTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQPNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316 vs. NCBI nr
Match: XP_022148399.1 (CAX-interacting protein 4 isoform X2 [Momordica charantia])

HSP 1 Score: 265.0 bits (676), Expect = 3.3e-67
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQ NTASSEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQPNTASSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKGNIGK
Sbjct: 121 VMSELDKLKGNIGK 134

[Close]

BLAST of Carg03316 vs. TAIR10
Match: AT2G28910.1 (CAX interacting protein 4)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-50
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP   +   + QQ T     + E
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTSKEEPKTTQQKT----EDPE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N+YASFQGLLALARITGSN +E RG+CK+CGRVGHL+FQCRNFLS K DKEKDP AI+A 
Sbjct: 61  NSYASFQGLLALARITGSNNDEARGSCKKCGRVGHLTFQCRNFLSTKEDKEKDPGAIEAA 120

Query: 121 VMSELDKLKGNIGK 135
           V+S L+K++  +GK
Sbjct: 121 VLSGLEKIRRGVGK 130

[Close]

BLAST of Carg03316 vs. Swiss-Prot
Match: sp|Q84Y18|CXIP4_ARATH (CAX-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=CXIP4 PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 3.6e-49
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP   +   + QQ T     + E
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTSKEEPKTTQQKT----EDPE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N+YASFQGLLALARITGSN +E RG+CK+CGRVGHL+FQCRNFLS K DKEKDP AI+A 
Sbjct: 61  NSYASFQGLLALARITGSNNDEARGSCKKCGRVGHLTFQCRNFLSTKEDKEKDPGAIEAA 120

Query: 121 VMSELDKLKGNIGK 135
           V+S L+K++  +GK
Sbjct: 121 VLSGLEKIRRGVGK 130

[Close]

BLAST of Carg03316 vs. Swiss-Prot
Match: sp|Q3B7G7|SR1IP_DANRE (Protein SREK1IP1 OS=Danio rerio OX=7955 GN=srek1ip1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.7e-04
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 77  GSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           G N + +R  CKRCG  GHL+F+CRNFL V  D  KD
Sbjct: 5   GPNKDNIRAGCKRCGYPGHLTFECRNFLRV--DPRKD 39

[Close]

BLAST of Carg03316 vs. Swiss-Prot
Match: sp|Q8N9Q2|SR1IP_HUMAN (Protein SREK1IP1 OS=Homo sapiens OX=9606 GN=SREK1IP1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-04
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 75  ITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           + G N + VR  CK+CG  GHL+F+CRNFL V  D ++D
Sbjct: 3   VPGCNKDSVRAGCKKCGYPGHLTFECRNFLRV--DPKRD 39

[Close]

BLAST of Carg03316 vs. Swiss-Prot
Match: sp|Q28EE8|SR1IP_XENTR (Protein SREK1IP1 OS=Xenopus tropicalis OX=8364 GN=srek1ip1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.0e-04
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 75  ITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKD 114
           + G N + +R  CK+CG  GHL+F+CRNFL V  D ++D
Sbjct: 3   VPGVNKDNIRAGCKKCGYPGHLTFECRNFLRV--DPQRD 39

[Close]

BLAST of Carg03316 vs. TrEMBL
Match: tr|A0A1S3CL87|A0A1S3CL87_CUCME (CAX-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103502085 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.1e-66
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK+SAQQNTASSEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNSAQQNTASSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           VMSELDKLKG  GK
Sbjct: 121 VMSELDKLKGGKGK 134

[Close]

BLAST of Carg03316 vs. TrEMBL
Match: tr|A0A0A0KHA7|A0A0A0KHA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190420 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.9e-65
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNK++AQQNTASSEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKNAAQQNTASSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD
Sbjct: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120

Query: 121 VMSELDKLKG 131
           VMSELDKLKG
Sbjct: 121 VMSELDKLKG 130

[Close]

BLAST of Carg03316 vs. TrEMBL
Match: tr|F6GV10|F6GV10_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g04730 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 115/134 (85.82%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDD K+S+Q  +++SEPEAE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDAKNSSQPKSSNSEPEAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNA+E RGACK+CGRVGHL+FQCRNFLS+K+DKEKDP+AIQA 
Sbjct: 61  NAYASFQGLLALARITGSNADETRGACKKCGRVGHLTFQCRNFLSIKDDKEKDPDAIQAS 120

Query: 121 VMSELDKLKGNIGK 135
           V+S LDKLKGN+GK
Sbjct: 121 VLSGLDKLKGNVGK 134

[Close]

BLAST of Carg03316 vs. TrEMBL
Match: tr|M5WBW2|M5WBW2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G077300 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 115/134 (85.82%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNK+DNK+SAQ N ++SEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKEDNKTSAQPNLSNSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           NAYASFQGLLALARITGSNA+E RGACKRCGRVGHL+FQCRNFLSVK DK+KDP+AIQAD
Sbjct: 61  NAYASFQGLLALARITGSNADEARGACKRCGRVGHLNFQCRNFLSVKEDKDKDPDAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           V SEL KLK  +G+
Sbjct: 121 VASELGKLKRKLGR 134

[Close]

BLAST of Carg03316 vs. TrEMBL
Match: tr|A0A2P6QIN9|A0A2P6QIN9_ROSCH (Putative transcription factor interactor and regulator CCHC(Zn) family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0064541 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDNKSSAQQNTASSEPEAE 60
           MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAP K++ KSS+Q N A+SEP+AE
Sbjct: 1   MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPTKEEGKSSSQVNLANSEPDAE 60

Query: 61  NAYASFQGLLALARITGSNANEVRGACKRCGRVGHLSFQCRNFLSVKNDKEKDPEAIQAD 120
           N YASFQGLLALARITGSNA+E RGACKRCGRVGHLSFQCRNFLSVK DKEKDPEAIQAD
Sbjct: 61  NPYASFQGLLALARITGSNADEARGACKRCGRVGHLSFQCRNFLSVKEDKEKDPEAIQAD 120

Query: 121 VMSELDKLKGNIGK 135
           V SEL KL+G +GK
Sbjct: 121 VASELSKLRGKLGK 134

The following BLAST results are available for this feature:

BLAST of Carg03316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943818.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita moschata]	[more]
XP_022986903.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita maxima]	[more]
XP_023511989.1	3.0e-68	100.00	CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023511990.1 CAX-inter...	[more]
XP_022148397.1	3.3e-67	98.51	CAX-interacting protein 4 isoform X1 [Momordica charantia] >XP_022148398.1 CAX-i...	[more]
XP_022148399.1	3.3e-67	98.51	CAX-interacting protein 4 isoform X2 [Momordica charantia]	[more]

BLAST of Carg03316 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28910.1	2.0e-50	72.39	CAX interacting protein 4	[more]

BLAST of Carg03316 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84Y18\|CXIP4_ARATH	3.6e-49	72.39	CAX-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=CXIP4 PE=1 SV=2	[more]
sp\|Q3B7G7\|SR1IP_DANRE	2.7e-04	56.76	Protein SREK1IP1 OS=Danio rerio OX=7955 GN=srek1ip1 PE=2 SV=1	[more]
sp\|Q8N9Q2\|SR1IP_HUMAN	4.6e-04	51.28	Protein SREK1IP1 OS=Homo sapiens OX=9606 GN=SREK1IP1 PE=1 SV=1	[more]
sp\|Q28EE8\|SR1IP_XENTR	6.0e-04	48.72	Protein SREK1IP1 OS=Xenopus tropicalis OX=8364 GN=srek1ip1 PE=2 SV=1	[more]

BLAST of Carg03316 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CL87\|A0A1S3CL87_CUCME	3.1e-66	97.01	CAX-interacting protein 4 OS=Cucumis melo OX=3656 GN=LOC103502085 PE=4 SV=1	[more]
tr\|A0A0A0KHA7\|A0A0A0KHA7_CUCSA	5.9e-65	97.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190420 PE=4 SV=1	[more]
tr\|F6GV10\|F6GV10_VITVI	1.7e-59	85.82	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g04730 PE=4 SV=...	[more]
tr\|M5WBW2\|M5WBW2_PRUPE	1.1e-58	85.82	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G077300 PE=4 SV=1	[more]
tr\|A0A2P6QIN9\|A0A2P6QIN9_ROSCH	1.4e-58	86.57	Putative transcription factor interactor and regulator CCHC(Zn) family OS=Rosa c...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03316-RA	Carg03316-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 83..108 e-value: 1.4E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..318
None	No IPR available	PANTHER	PTHR31437	FAMILY NOT NAMED	coord: 6..266
None	No IPR available	PANTHER	PTHR31437:SF1	PROTEIN SREK1IP1	coord: 6..266
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 87..102 score: 8.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03316	Cla013308	Watermelon (97103) v1	carwmB0330
Carg03316	Csa6G190420	Cucumber (Chinese Long) v2	carcuB0370
Carg03316	MELO3C025917	Melon (DHL92) v3.5.1	carmeB0339
Carg03316	ClCG02G020150	Watermelon (Charleston Gray)	carwcgB0327
Carg03316	CSPI06G14460	Wild cucumber (PI 183967)	carcpiB0373
Carg03316	Cucsa.138680	Cucumber (Gy14) v1	carcgyB0393
Carg03316	CmaCh20G004020	Cucurbita maxima (Rimu)	carcmaB0473
Carg03316	CmoCh20G004430	Cucurbita moschata (Rifu)	carcmoB0464
Carg03316	Lsi10G013790	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03316	Cp4.1LG16g06100	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03316	CsGy6G014330	Cucumber (Gy14) v2	carcgybB0350
Carg03316	MELO3C025917.2	Melon (DHL92) v3.6.1	carmedB0345
Carg03316	CsaV3_6G016860	Cucumber (Chinese Long) v3	carcucB0374
Carg03316	Bhi10G000566	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03316	Cucumber (Chinese Long) v2	carcuB0359
Carg03316	Silver-seed gourd	carcarB186
Carg03316	Silver-seed gourd	carcarB330
Carg03316	Silver-seed gourd	carcarB351
Carg03316	Silver-seed gourd	carcarB353
Carg03316	Silver-seed gourd	carcarB360
Carg03316	Silver-seed gourd	carcarB367
Carg03316	Cucumber (Gy14) v2	carcgybB0341
Carg03316	Cucumber (Gy14) v2	carcgybB0345
Carg03316	Cucumber (Gy14) v1	carcgyB0389
Carg03316	Cucumber (Gy14) v1	carcgyB0396
Carg03316	Cucumber (Gy14) v1	carcgyB0398
Carg03316	Cucurbita maxima (Rimu)	carcmaB0477
Carg03316	Cucurbita maxima (Rimu)	carcmaB0469
Carg03316	Cucurbita maxima (Rimu)	carcmaB0470
Carg03316	Cucurbita maxima (Rimu)	carcmaB0479
Carg03316	Cucurbita maxima (Rimu)	carcmaB0481
Carg03316	Cucurbita maxima (Rimu)	carcmaB0482
Carg03316	Cucurbita moschata (Rifu)	carcmoB0461
Carg03316	Cucurbita moschata (Rifu)	carcmoB0467
Carg03316	Cucurbita moschata (Rifu)	carcmoB0469
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0462
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0468
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0469
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0472
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03316	Cucurbita pepo (Zucchini)	carcpeB0481
Carg03316	Wild cucumber (PI 183967)	carcpiB0363
Carg03316	Wild cucumber (PI 183967)	carcpiB0365
Carg03316	Wild cucumber (PI 183967)	carcpiB0367
Carg03316	Wild cucumber (PI 183967)	carcpiB0369
Carg03316	Cucumber (Chinese Long) v2	carcuB0362
Carg03316	Cucumber (Chinese Long) v2	carcuB0364
Carg03316	Cucumber (Chinese Long) v2	carcuB0366
Carg03316	Cucumber (Chinese Long) v3	carcucB0364
Carg03316	Cucumber (Chinese Long) v3	carcucB0366
Carg03316	Cucumber (Chinese Long) v3	carcucB0368
Carg03316	Bottle gourd (USVL1VR-Ls)	carlsiB308
Carg03316	Bottle gourd (USVL1VR-Ls)	carlsiB309
Carg03316	Bottle gourd (USVL1VR-Ls)	carlsiB311
Carg03316	Melon (DHL92) v3.5.1	carmeB0338
Carg03316	Melon (DHL92) v3.5.1	carmeB0346
Carg03316	Melon (DHL92) v3.5.1	carmeB0348
Carg03316	Melon (DHL92) v3.6.1	carmedB0344
Carg03316	Melon (DHL92) v3.6.1	carmedB0353
Carg03316	Melon (DHL92) v3.6.1	carmedB0354
Carg03316	Watermelon (Charleston Gray)	carwcgB0323
Carg03316	Watermelon (Charleston Gray)	carwcgB0331
Carg03316	Watermelon (Charleston Gray)	carwcgB0332
Carg03316	Watermelon (97103) v1	carwmB0321
Carg03316	Watermelon (97103) v1	carwmB0323
Carg03316	Watermelon (97103) v1	carwmB0325
Carg03316	Watermelon (97103) v2	carwmbB0341
Carg03316	Watermelon (97103) v2	carwmbB0346
Carg03316	Watermelon (97103) v2	carwmbB0351
Carg03316	Watermelon (97103) v2	carwmbB0352
Carg03316	Watermelon (97103) v2	carwmbB0354
Carg03316	Wax gourd	carwgoB0416
Carg03316	Wax gourd	carwgoB0426