Carg03276-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGACCGTCACCGGAAGTATCGTTTCTTCGAAGCCAATCTCTATCTCAAAAGCGGCGTCCACTCTCTCCTCCTTTCTCTCCGTCGACAATGGCGCTTCGAAAGCAATTTGCGCCTATCTGAGACGCGCCTCCGCCTCTTTCAACGAGTTAAAGCAGCTCCACAAGGAGTTGAAATCTTCGCGATCTGATCGGAAGCACCGGCATCACGGATCCGAGGCTTCAAACGATCCAGAGGCTTCCAGAGATAATCCACATTGGATTGAAGACGGCGAGAAGAAAAATCCTCTGTATCTAAGAGCTAAAGTTGGAAGAAGCGGTAAGCCGAGTTTTAATGTTCAATCTGAGGATGGGAAGGATGGGAAGACGGAAAAGGAAAGCGGTGGGAATGGTGATTTTGAGGATGCATCGGGTGAATATCGGAAGAGAAAGGTCGAGGACTTGAAGACTGAAATTGAAGATAAACCTAACCGAAAAGTAGAGATGGATGTGGAATCAAGTGATAAAGATAAGAGCGTTGTAGCAGTTGAGACAAAAAGAAAAAAGCACAAGAAAAAGAGCGAGGATAGACACGCTAAGATCGAAGATGACGAACGCGAGAATGGAGCCAGGCGAAGTTACAGTAAATCGCGAATTAGCGATAATAATGGCGAAATTGAAGCTTCTGGGAAGTTCGTCGAGAACAATATCGCAAGCGGAAAAGATAGAAAGAAGCACGAGGACAAGAAGAGTTTGGTTGACGATAAGGATCAAGTAAAGAGTGAAGGTCAGAGAAGAAGAGACGCCGAGGAGGAAAAGAGCACAAACAAGGATAATGATGATGGAGCAGAATCGACCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAACAGGGAAGAAGAAGATGACGATTTTCAGAACAACAGTGGAGGAGCTATGGTGAAAGAGGAAATTCCAGTTTCGGATGACAAAGAGTTGAAAAGGAAAGAGAAGAAAAAAAGGAAGAATCGAGGTTTAGAAGAAGGGGGTGATGATGGGTCCGAGGAACAACAGCGTACGAAGAGAAGAAAAGGAAATTTATGA ATGAAGACCGTCACCGGAAGTATCGTTTCTTCGAAGCCAATCTCTATCTCAAAAGCGGCGTCCACTCTCTCCTCCTTTCTCTCCGTCGACAATGGCGCTTCGAAAGCAATTTGCGCCTATCTGAGACGCGCCTCCGCCTCTTTCAACGAGTTAAAGCAGCTCCACAAGGAGTTGAAATCTTCGCGATCTGATCGGAAGCACCGGCATCACGGATCCGAGGCTTCAAACGATCCAGAGGCTTCCAGAGATAATCCACATTGGATTGAAGACGGCGAGAAGAAAAATCCTCTGTATCTAAGAGCTAAAGTTGGAAGAAGCGGTAAGCCGAGTTTTAATGTTCAATCTGAGGATGGGAAGGATGGGAAGACGGAAAAGGAAAGCGGTGGGAATGGTGATTTTGAGGATGCATCGGGTGAATATCGGAAGAGAAAGGTCGAGGACTTGAAGACTGAAATTGAAGATAAACCTAACCGAAAAGTAGAGATGGATGTGGAATCAAGTGATAAAGATAAGAGCGTTGTAGCAGTTGAGACAAAAAGAAAAAAGCACAAGAAAAAGAGCGAGGATAGACACGCTAAGATCGAAGATGACGAACGCGAGAATGGAGCCAGGCGAAGTTACAGTAAATCGCGAATTAGCGATAATAATGGCGAAATTGAAGCTTCTGGGAAGTTCGTCGAGAACAATATCGCAAGCGGAAAAGATAGAAAGAAGCACGAGGACAAGAAGAGTTTGGTTGACGATAAGGATCAAGTAAAGAGTGAAGGTCAGAGAAGAAGAGACGCCGAGGAGGAAAAGAGCACAAACAAGGATAATGATGATGGAGCAGAATCGACCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAACAGGGAAGAAGAAGATGACGATTTTCAGAACAACAGTGGAGGAGCTATGGTGAAAGAGGAAATTCCAGTTTCGGATGACAAAGAGTTGAAAAGGAAAGAGAAGAAAAAAAGGAAGAATCGAGGTTTAGAAGAAGGGGGTGATGATGGGTCCGAGGAACAACAGCGTACGAAGAGAAGAAAAGGAAATTTATGA ATGAAGACCGTCACCGGAAGTATCGTTTCTTCGAAGCCAATCTCTATCTCAAAAGCGGCGTCCACTCTCTCCTCCTTTCTCTCCGTCGACAATGGCGCTTCGAAAGCAATTTGCGCCTATCTGAGACGCGCCTCCGCCTCTTTCAACGAGTTAAAGCAGCTCCACAAGGAGTTGAAATCTTCGCGATCTGATCGGAAGCACCGGCATCACGGATCCGAGGCTTCAAACGATCCAGAGGCTTCCAGAGATAATCCACATTGGATTGAAGACGGCGAGAAGAAAAATCCTCTGTATCTAAGAGCTAAAGTTGGAAGAAGCGGTAAGCCGAGTTTTAATGTTCAATCTGAGGATGGGAAGGATGGGAAGACGGAAAAGGAAAGCGGTGGGAATGGTGATTTTGAGGATGCATCGGGTGAATATCGGAAGAGAAAGGTCGAGGACTTGAAGACTGAAATTGAAGATAAACCTAACCGAAAAGTAGAGATGGATGTGGAATCAAGTGATAAAGATAAGAGCGTTGTAGCAGTTGAGACAAAAAGAAAAAAGCACAAGAAAAAGAGCGAGGATAGACACGCTAAGATCGAAGATGACGAACGCGAGAATGGAGCCAGGCGAAGTTACAGTAAATCGCGAATTAGCGATAATAATGGCGAAATTGAAGCTTCTGGGAAGTTCGTCGAGAACAATATCGCAAGCGGAAAAGATAGAAAGAAGCACGAGGACAAGAAGAGTTTGGTTGACGATAAGGATCAAGTAAAGAGTGAAGGTCAGAGAAGAAGAGACGCCGAGGAGGAAAAGAGCACAAACAAGGATAATGATGATGGAGCAGAATCGACCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAACAGGGAAGAAGAAGATGACGATTTTCAGAACAACAGTGGAGGAGCTATGGTGAAAGAGGAAATTCCAGTTTCGGATGACAAAGAGTTGAAAAGGAAAGAGAAGAAAAAAAGGAAGAATCGAGGTTTAGAAGAAGGGGGTGATGATGGGTCCGAGGAACAACAGCGTACGAAGAGAAGAAAAGGAAATTTATGA MKTVTGSIVSSKPISISKAASTLSSFLSVDNGASKAICAYLRRASASFNELKQLHKELKSSRSDRKHRHHGSEASNDPEASRDNPHWIEDGEKKNPLYLRAKVGRSGKPSFNVQSEDGKDGKTEKESGGNGDFEDASGEYRKRKVEDLKTEIEDKPNRKVEMDVESSDKDKSVVAVETKRKKHKKKSEDRHAKIEDDERENGARRSYSKSRISDNNGEIEASGKFVENNIASGKDRKKHEDKKSLVDDKDQVKSEGQRRRDAEEEKSTNKDNDDGAESTKKKKKKKKKKNREEEDDDFQNNSGGAMVKEEIPVSDDKELKRKEKKKRKNRGLEEGGDDGSEEQQRTKRRKGNL
BLAST of Carg03276-RA vs. NCBI nr
Match: XP_022943393.1 (glutamic acid-rich protein-like [Cucurbita moschata] >XP_022943394.1 glutamic acid-rich protein-like [Cucurbita moschata] >XP_022943395.1 glutamic acid-rich protein-like [Cucurbita moschata] >XP_022943397.1 glutamic acid-rich protein-like [Cucurbita moschata] >XP_022943398.1 glutamic acid-rich protein-like [Cucurbita moschata]) HSP 1 Score: 373.6 bits (958), Expect = 7.3e-100 Identity = 209/239 (87.45%), Postives = 211/239 (88.28%), Query Frame = 0
BLAST of Carg03276-RA vs. NCBI nr
Match: XP_022986894.1 (cylicin-1-like [Cucurbita maxima] >XP_022986895.1 cylicin-1-like [Cucurbita maxima] >XP_022986896.1 cylicin-1-like [Cucurbita maxima]) HSP 1 Score: 347.1 bits (889), Expect = 7.3e-92 Identity = 197/239 (82.43%), Postives = 201/239 (84.10%), Query Frame = 0
BLAST of Carg03276-RA vs. NCBI nr
Match: XP_023511985.1 (DNA topoisomerase 1-like [Cucurbita pepo subsp. pepo] >XP_023511986.1 DNA topoisomerase 1-like [Cucurbita pepo subsp. pepo] >XP_023511987.1 DNA topoisomerase 1-like [Cucurbita pepo subsp. pepo] >XP_023511988.1 DNA topoisomerase 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 335.1 bits (858), Expect = 2.9e-88 Identity = 202/239 (84.52%), Postives = 205/239 (85.77%), Query Frame = 0
BLAST of Carg03276-RA vs. NCBI nr
Match: XP_008463862.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo]) HSP 1 Score: 221.9 bits (564), Expect = 3.5e-54 Identity = 157/245 (64.08%), Postives = 178/245 (72.65%), Query Frame = 0
BLAST of Carg03276-RA vs. NCBI nr
Match: XP_022947113.1 (DEAD-box ATP-dependent RNA helicase 42-like isoform X1 [Cucurbita moschata] >XP_022947114.1 DEAD-box ATP-dependent RNA helicase 42-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48 Identity = 140/239 (58.58%), Postives = 169/239 (70.71%), Query Frame = 0
BLAST of Carg03276-RA vs. TAIR10
Match: AT5G60030.1 (unknown protein) HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13 Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0
BLAST of Carg03276-RA vs. TAIR10
Match: AT1G75335.1 (unknown protein) HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12 Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 0
BLAST of Carg03276-RA vs. TrEMBL
Match: tr|A0A1S3CK97|A0A1S3CK97_CUCME (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103501895 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 2.3e-54 Identity = 157/245 (64.08%), Postives = 178/245 (72.65%), Query Frame = 0
BLAST of Carg03276-RA vs. TrEMBL
Match: tr|A0A0A0KCS1|A0A0A0KCS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301030 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 5.6e-48 Identity = 148/244 (60.66%), Postives = 173/244 (70.90%), Query Frame = 0
BLAST of Carg03276-RA vs. TrEMBL
Match: tr|A0A2P5CIF3|A0A2P5CIF3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_149560 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 6.2e-15 Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 0
BLAST of Carg03276-RA vs. TrEMBL
Match: tr|A0A061GZI3|A0A061GZI3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_041081 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14 Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 0
BLAST of Carg03276-RA vs. TrEMBL
Match: tr|A0A1R3HB71|A0A1R3HB71_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20433 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14 Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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