Carg03013-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03013-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TRAF-type zinc finger domain-containing 1
Location	Cucurbita_argyrosperma_scaffold_008 : 1343993 .. 1347155 (-)
Sequence length	1198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTGAATCCTGTGAACGAACATTTTCTTCTCTTGGTGAAGGTGGGTGAAGGTGGGTGAGGGTCTTCGTTCGTGAAACTCATTCACTTAATTAAAGTAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGGTAATTTTCATTCAATCTCAGAGTCTTTCCATTTTATCCTCCTTTTTGATCTCCTCAAATTTCTCTGCAGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCACGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGGTATTGTAATTCTGGACGGATGTATAGTTTTTTTTTTTTTTTTCGGCAAGAGATCTCTTGATTGGAAATTTTATTTCAATTTATTTTATTTCTGGCGTTGATTTTTGTTGATGTCTTTGTCAATCGCGATTATCGTTTGTGATTGTTTCGGAATTTCGATTTGTTCCTTTCAATTGTGTTTGAGATTTGATTGTTTTGGGGGATAGAACTCTCATCCAATTTAGGCACAAATCTGCCAAGGCAGGATCGTTATTTTGTTTTTTTGATTTGGAAAAAGAACTGTTTGGTAAGAATTTGAATCGCCTGATTATCTTTTCTTCTTCGTGATGAATTTTTATCTGATCCCTTTCCTAGCAGTTGTTCTTCTATTGTGATGATCTGGATGGTAAATGCTTTTATTTCTCCATTTACAGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTACGATGATTTTTCTTTCAAACTTAGTAAATACCATGGCATTCATATTCTATAGTGCATAAATGAAAGCATAACATTAAGCTTGAGGGTTATTATATTTTCTTTAGATTGCCTTGAGAAGATTCTGCAGCATACAAATTCTCTCTTAAGACTGTTTTGATAAGAATTAGTGGTACTACTCTTAATTTTTGGAATTTCAAGTGCTTATGACCTTATGTTTGGACAGGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGTATGACAAATATTGAATTTTTAGTTAAATGAAAATTTCAAAAGCGATCTCCATGTTATACCTTTGTTGGTTCAAATTTGCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGTATTTCAACTTGCAATTCTTGAAAGTATTCAACATATTCTATACTGATAACTGCTATCTCTCATTGAGCCCCATAGGATGTCGATTTTTGATGCTATATGCAGTTGGTAGTGCTTAGTTTAAGGTTCTGTATAGTTATCCCATGGCTATGGCTTTCTTCTTGTGGATATCGAAAACCATGGAAATTTTAGATACCCTCTTCCATGGATTTCTATGCCCTCTCTTTTCATTATCATATATTAATTAATGTTGATCAATTGGTTATTTAATCTGTCTTAGTATTCATTTGTTACTTCTATAAATACATTTTGAAATTAAATATCTGAACTTTTCAGTCTCAATCTTCACTCATCAAGGAAAAACCAAACCTTTTCACAACTATAGATGTAACCTCCCTTTTCCTTCTAGGCTTCCCCTCAGGGTTTTAAAATGCCTCTATTAGAGGGAGGTTTCCACACCCTTATAAGTAATGTTTCGTTCCCCTCTCCAACCGATGTGGGTTCTTACAATCCACCCCCTTTGGGGACTAGCGTCCTCGCTGAGACACCTCCCGATATCTGGCTTTGATATCATTTGTAACAGCCTAAGCCTACTGTTAGCAGATATTGTCCTGTTTGTACTTTATCTTTTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTAGGTAAAGGTTTCCACACTCTTATAAGAAATGTTTCATTCCCCTCTCCAAACGATGTGGGATCTCACAAAAGATGAGTTCCATGGATTCAAGTGCTAAATCTGAAACTTGCACTTTATTTGAAAACATCTCCCTGGTCTTTTGTAAACTTAAACTTCGGCAATAAATGAGTCTTGATGGTATTGTACACGAGTGCCCTGTAATTTGCGTGTTCTTTGTTCTTCCTTCTTCTCAACGGAATGACGAAGGTTAGCATCGTTACATGGCACACCGATGTGCCTATGCTGCCATTAGGGTTAGCTTCCAATTTATACTGGGTCGGTTAGGAATATACCAGATCGAATGAACTTATAGTATGTGGGTATGATTCGTGGTACAACTTGGAACTCAACCCTCAGTTCTTTACTCACGTTCATAACTTTTCTTATTCTATATGTTCAGTTTGTTATCTTCTAATAACGTGCTTAATCATTCTAAACTGTATCTGAAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCATAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTCGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTTACAAATTTAATTCCTAGCGATTTTCTTTTTTTCTTTACTTTTCACTTTGTTATTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTCTTAAATGTCAAGAATTTAGAATCTGCCATTGTCAGAATTTTTTTTTTTTTTTTTTTATATAAGAATAATATATATTCT

mRNA sequence

CGCTGAATCCTGTGAACGAACATTTTCTTCTCTTGGTGAAGGTGGGTGAAGGTGGGTGAGGGTCTTCGTTCGTGAAACTCATTCACTTAATTAAAGTAGTTGAATCCAAGTCGGTCGGTCCTCGTTTCGAAACGTTATCGATCCACGGCTACAATTTCTTGCGCTTCAATTCTCCTTCCCCTAATTTTGACATAATCGGACCTTGAACGACGATCGTCTACCTTCCGTCACGATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGATCGATGGTAAGCTTACCATAGATCCTACAACTTCCATTTTTCTGCAGCAAGAATATCAGAACACTACTGTAAACTTATGAAACACATGGGCGGATAATTTGATTATGGCCTGATGCTCTGCCTCCTCTGCTCTTTGGGGGATTTTATTTATGTTCGTTGGAATTACGTGGGAAGAAAAAGTAAATTTAATTTACAAATTTAATTCCTAGCGATTTTCTTTTTTTCTTTACTTTTCACTTTGTTATTAGCGTACTGAATGAGTTCCCATTTTGTGAATATTTGGTTTCTTAAATGTCAAGAATAATTTTTTTTTTTTTTTTTTTATATAAGAATAATATATATTCT

Coding sequence (CDS)

ATGGCAGTTGCATCTGAAGAGACCACAAGCATATGCAATCACTGCGGCAGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGCGCGGAATCTAGAAAAATGTAAAATATGTGGTGATATGGTTCCTAAAAGGCATGCGGAGGAACATTATCTGAACACTCATGCTCCCGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGCGAAAACTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTCCCATTGCCAGCAGTAGATTTGGCTGAGCATCAGGAAGTATGTGGTAACCGGACCGAACTTTGTCATCTGTGTCGTCGATATATCAGACTACGAGAGCGATATAGCCATGAAAATAATTGCAAGGGTGTCACAGCTGCAGATACCGTTGCTGAATCTTCCAGGGATGTGGGGGCAGCTCCAGAAAGAGATCAAGTTAGAGATCGAGGCGCTCGACGAAGACAGCCACAGGAGTTTTCTACCCGACGTCTTATATTCACTATTGCAATAACGGGCATTGCCGTTCTACTAGGATCGCTATTTTTCCAGAGAAAGGCCGAGAGCAACATCATGCACTGA

Protein sequence

MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQRKAESNIMH

Homology

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BLAST of Carg03013-RA vs. NCBI nr
Match: XP_023534901.1 (XIAP-associated factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 3.8e-117
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNIMH
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIMH 206

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BLAST of Carg03013-RA vs. NCBI nr
Match: XP_022936676.1 (XIAP-associated factor 1-like [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 4.2e-116
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS NIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNI+H
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIVH 206

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BLAST of Carg03013-RA vs. NCBI nr
Match: XP_022975863.1 (XIAP-associated factor 1-like [Cucurbita maxima])

HSP 1 Score: 426.4 bits (1095), Expect = 5.5e-116
Identity = 204/206 (99.03%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS NIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSANIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERYSHENNCKGV AADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF
Sbjct: 121 RYIRLRERYSHENNCKGVAAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQRKAESNIMH
Sbjct: 181 TIAITGIAVLLGSLFFQRKAESNIMH 206

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BLAST of Carg03013-RA vs. NCBI nr
Match: XP_008466135.1 (PREDICTED: XIAP-associated factor 1 [Cucumis melo] >XP_008466136.1 PREDICTED: XIAP-associated factor 1 [Cucumis melo])

HSP 1 Score: 400.2 bits (1027), Expect = 4.2e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

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BLAST of Carg03013-RA vs. NCBI nr
Match: XP_004136248.1 (PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >XP_004136249.1 PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >KGN60277.1 hypothetical protein Csa_3G892780 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 3.6e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

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BLAST of Carg03013-RA vs. TAIR10
Match: AT1G09920.1 (TRAF-type zinc finger-related)

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-79
Identity = 139/201 (69.15%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           M  A+ E T +CNHC RDIPS NIDLH VHCARNLEKCKICGDMVPK+HAEEHYLNTHAP
Sbjct: 1   METATGEITIVCNHCDRDIPSLNIDLHRVHCARNLEKCKICGDMVPKKHAEEHYLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           ++CS+C ET+ER+I   HKGE CP+RIVTCEFCEFPLPAVDLAEHQEVCGNRTELC+ C 
Sbjct: 61  IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
            Y+RLRERY+HE  C G        ESSR +  A E D     G RRR     S +RL F
Sbjct: 121 SYVRLRERYNHETKCPG------TVESSRRIPRAAEGD---GNGRRRRDGNGVSNKRLFF 180

Query: 181 TIAITGIAVLLGSLFFQRKAE 202
           TIAITGIAV++GSLFFQRK E
Sbjct: 181 TIAITGIAVIIGSLFFQRKPE 192

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BLAST of Carg03013-RA vs. TAIR10
Match: AT4G15420.1 (Ubiquitin fusion degradation UFD1 family protein)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-16
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 4   ASEETTSICNHCGRDIPSTNIDLHSVHC--------------------ARNLEKCKICGD 63
           +S+  T  C +C   IPS +I LH V+C                    A+N   C+ CG 
Sbjct: 395 SSDVDTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGK 454

Query: 64  MVPKRHAEEHYLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFC----EFPLPA 123
            +     E+H    H P++C  C   +E++ +  H+G++CP R++ C FC    E    A
Sbjct: 455 ALQPTEMEKHLKVFHEPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSA 514

Query: 124 VD-------LAEHQEVCGNRTELCHLCRRYIRLRERYSHE 133
            D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct: 515 ADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

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BLAST of Carg03013-RA vs. Swiss-Prot
Match: sp|Q6GPH4|XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 46/149 (30.87%), Postives = 64/149 (42.95%), Query Frame = 0


Query: 10  SICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSLCSET 69
           S+C +C R + S N  LH  +C R L  C  C + VPK   EEH    H  V C++C ++
Sbjct: 6   SVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQS 65

Query: 70  MERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCRRYIRLRERY 129
           M++  L  HK   C                         CG+RTELC  C ++I  R   
Sbjct: 66  MQKSSLEFHKANECXXXXXXXXXXXXXXXXXXXXXXXXYCGSRTELCQGCGQFIMHRMLA 125

Query: 130 SHENNCKGVTAADTVAESSRDVGAAPERD 159
            H + C+   A     E      +APER+
Sbjct: 126 QHRDVCRSEQAQLGKGERI----SAPERE 150

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BLAST of Carg03013-RA vs. Swiss-Prot
Match: sp|Q99MM4|TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-15
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 6   EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++   +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQ 107
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH+
Sbjct: 67  CNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106

[Close]

BLAST of Carg03013-RA vs. Swiss-Prot
Match: sp|Q3UDK1|TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-15
Identity = 32/100 (32.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 6   EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
           ++ + +C++C ++IP  N  +H +HC RN+  C +C +  PK   + H    H  V+C  
Sbjct: 7   DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTCK- 66

Query: 66  CSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEH 106
           C++ +E+  L  H    CP R+  C+ C+  L  V L EH
Sbjct: 67  CNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEH 105

[Close]

BLAST of Carg03013-RA vs. Swiss-Prot
Match: sp|Q4R970|TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 6  EETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCSL 65
          ++ T +C++C ++IP  N  +H +HC RN+  C IC +  PK   E H    H  V+C  
Sbjct: 7  DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTCK- 66

Query: 66 CSETMERDILAIHKGENCPQRIVTCEFCEFPL 98
          C++ +E+ +L  H+   CP R+  C+ C+  L
Sbjct: 67 CNKKLEKRLLKKHEETECPLRLAVCQHCDLEL 97

[Close]

BLAST of Carg03013-RA vs. Swiss-Prot
Match: sp|Q58D05|TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14
Identity = 31/98 (31.63%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 5   SEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAPVSCS 64
           +++ T +C++C ++IP  N  +H +HC RN+  C +C +  PK   E H    H  V+C 
Sbjct: 6   NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTCK 65

Query: 65  LCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDL 103
            C++ +E+  L  H+   CP R+  C+ C+  L  + L
Sbjct: 66  -CNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKL 102

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BLAST of Carg03013-RA vs. TrEMBL
Match: tr|A0A1S3CRX9|A0A1S3CRX9_CUCME (XIAP-associated factor 1 OS=Cucumis melo OX=3656 GN=LOC103503642 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.8e-108
Identity = 190/207 (91.79%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHC RNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCVRNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGA+RRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIVPADNIAESSRDVGAAPERDHQARDRGAQRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFFQRK+ESNI+H
Sbjct: 181 FTIAITGIAVLLGSLFFQRKSESNIVH 207

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BLAST of Carg03013-RA vs. TrEMBL
Match: tr|A0A0A0LHP4|A0A0A0LHP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892780 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 2.4e-107
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETTSICNHCGRDIPS+NIDLHSVHCARNLEKCKICGDMVPKRHAEEH+LNTHAP
Sbjct: 1   MAVASEETTSICNHCGRDIPSSNIDLHSVHCARNLEKCKICGDMVPKRHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELC LCR
Sbjct: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCPLCR 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERD-QVRDRGARRRQPQEFSTRRLI 180
            YIRLRERY+HENNCKG+  AD +AESSRDVGAAPERD Q RDRGARRRQPQEFSTRRLI
Sbjct: 121 CYIRLRERYNHENNCKGIIPADNIAESSRDVGAAPERDHQARDRGARRRQPQEFSTRRLI 180

Query: 181 FTIAITGIAVLLGSLFFQRKAESNIMH 207
           FTIAITGIAVLLGSLFF RK ESN +H
Sbjct: 181 FTIAITGIAVLLGSLFFPRKTESNGVH 207

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BLAST of Carg03013-RA vs. TrEMBL
Match: tr|A0A061FEN2|A0A061FEN2_THECC (TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88
Identity = 159/206 (77.18%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 1   MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GV  A+ V  SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 121 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 181 TIAITGIAVLLGSLFFQKKTETSQVH 198

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BLAST of Carg03013-RA vs. TrEMBL
Match: tr|A0A061FF34|A0A061FF34_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.9e-88
Identity = 159/206 (77.18%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MA+AS+ETT ICNHC R IPS+NIDLH  HC RNLEKCK+CGDMVPK+HA+EH+LNTHAP
Sbjct: 46  MALASDETTRICNHCDRPIPSSNIDLHYAHCVRNLEKCKVCGDMVPKKHAQEHFLNTHAP 105

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 106 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 165

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE+ C GV  A+ V  SSRDV AA      R++GA+RRQP E+S RRL+F
Sbjct: 166 RYIRLRERYNHESRCSGV--AENVG-SSRDVRAAE-----REQGAQRRQPPEYSRRRLLF 225

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGSLFFQ+K E++ +H
Sbjct: 226 TIAITGIAVLLGSLFFQKKTETSQVH 243

[Close]

BLAST of Carg03013-RA vs. TrEMBL
Match: tr|A0A251IR18|A0A251IR18_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G057500 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.1e-87
Identity = 159/206 (77.18%), Postives = 176/206 (85.44%), Query Frame = 0


Query: 1   MAVASEETTSICNHCGRDIPSTNIDLHSVHCARNLEKCKICGDMVPKRHAEEHYLNTHAP 60
           MAVASEETT+IC+HC R IPS NIDLH  HC+RNLEKCKICGDMVPK+HAEEH+LNTHAP
Sbjct: 1   MAVASEETTNICSHCDRAIPSLNIDLHFAHCSRNLEKCKICGDMVPKKHAEEHFLNTHAP 60

Query: 61  VSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCHLCR 120
           V+CSLCSETMER+ILAIHKGENCPQRIVTCEFCEFPLPA+DLAEHQEVCGNRTELCHLC 
Sbjct: 61  VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCN 120

Query: 121 RYIRLRERYSHENNCKGVTAADTVAESSRDVGAAPERDQVRDRGARRRQPQEFSTRRLIF 180
           RYIRLRERY+HE  C GV  +D+ A SSRDV AA      R  GA R QP ++S RRL+F
Sbjct: 121 RYIRLRERYNHEARCTGV--SDSTAGSSRDVRAAE-----RAPGAPRTQPHDYSRRRLLF 180

Query: 181 TIAITGIAVLLGSLFFQRKAESNIMH 207
           TIAITGIAVLLGS+ FQRK  +N +H
Sbjct: 181 TIAITGIAVLLGSILFQRKTGNNQVH 199

The following BLAST results are available for this feature:

BLAST of Carg03013-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534901.1	3.8e-117	100.00	XIAP-associated factor 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936676.1	4.2e-116	99.03	XIAP-associated factor 1-like [Cucurbita moschata]	[more]
XP_022975863.1	5.5e-116	99.03	XIAP-associated factor 1-like [Cucurbita maxima]	[more]
XP_008466135.1	4.2e-108	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis melo] >XP_008466136.1 PREDICTED: XI...	[more]
XP_004136248.1	3.6e-107	91.79	PREDICTED: XIAP-associated factor 1 [Cucumis sativus] >XP_004136249.1 PREDICTED:...	[more]

BLAST of Carg03013-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09920.1	5.0e-79	69.15	TRAF-type zinc finger-related	[more]
AT4G15420.1	3.5e-16	28.75	Ubiquitin fusion degradation UFD1 family protein	[more]

BLAST of Carg03013-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6GPH4\|XAF1_HUMAN	7.5e-16	30.87	XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1	[more]
sp\|Q99MM4\|TRAD1_RAT	3.7e-15	31.68	TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 ...	[more]
sp\|Q3UDK1\|TRAD1_MOUSE	6.4e-15	32.00	TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tr...	[more]
sp\|Q4R970\|TRAD1_MACFA	1.4e-14	33.70	TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541...	[more]
sp\|Q58D05\|TRAD1_BOVIN	3.2e-14	31.63	TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD...	[more]

BLAST of Carg03013-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRX9\|A0A1S3CRX9_CUCME	2.8e-108	91.79	XIAP-associated factor 1 OS=Cucumis melo OX=3656 GN=LOC103503642 PE=4 SV=1	[more]
tr\|A0A0A0LHP4\|A0A0A0LHP4_CUCSA	2.4e-107	91.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G892780 PE=4 SV=1	[more]
tr\|A0A061FEN2\|A0A061FEN2_THECC	1.9e-88	77.18	TRAF-type zinc finger-related isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_034548...	[more]
tr\|A0A061FF34\|A0A061FF34_THECC	1.9e-88	77.18	TRAF-type zinc finger domain-containing protein 1 isoform 1 OS=Theobroma cacao O...	[more]
tr\|A0A251IR18\|A0A251IR18_MANES	6.1e-87	77.18	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G057500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03013	Carg03013	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03013-RA	Carg03013-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03013-RA.three_prime_UTR.2	Carg03013-RA.three_prime_UTR.2	three_prime_UTR
Carg03013-RA.three_prime_UTR.1	Carg03013-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03013-RA.CDS.5	Carg03013-RA.CDS.5	CDS
Carg03013-RA.CDS.4	Carg03013-RA.CDS.4	CDS
Carg03013-RA.CDS.3	Carg03013-RA.CDS.3	CDS
Carg03013-RA.CDS.2	Carg03013-RA.CDS.2	CDS
Carg03013-RA.CDS.1	Carg03013-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03013-RA.five_prime_UTR.2	Carg03013-RA.five_prime_UTR.2	five_prime_UTR
Carg03013-RA.five_prime_UTR.1	Carg03013-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03013-RA.exon.7	Carg03013-RA.exon.7	exon
Carg03013-RA.exon.6	Carg03013-RA.exon.6	exon
Carg03013-RA.exon.5	Carg03013-RA.exon.5	exon
Carg03013-RA.exon.4	Carg03013-RA.exon.4	exon
Carg03013-RA.exon.3	Carg03013-RA.exon.3	exon
Carg03013-RA.exon.2	Carg03013-RA.exon.2	exon
Carg03013-RA.exon.1	Carg03013-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 60..115 e-value: 5.8E-8 score: 34.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..169
None	No IPR available	PANTHER	PTHR16295	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	coord: 4..200
None	No IPR available	PANTHER	PTHR16295:SF23	SUBFAMILY NOT NAMED	coord: 4..200