Carg03011-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03011-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription initiation factor IIA subunit 2
Location	Cucurbita_argyrosperma_scaffold_008 : 1335082 .. 1336893 (-)
Sequence length	692

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTGTAACTACAATTCCTTGCTTGTACTCGCTCTTTAATTTTATTTCGTTCCTTTTAGAATTGATCTCTCGCTTTTATTTCGAAGATTTTGCCAGCTTTCTCGAATTCTGATGCTATGTTTCAAATTTTTCTGAAGATTTTGTCAATTCTGGATGTGTATTTTTTGACTAAATTTGATATCTTAGCTAAAGAGCTTCCATATTTTTCAGATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGGTACAGTCAAAGCTGTTTGAAGATTTTATATATTTTTGGATTTGTGTACGGAATTAAGGTTTAAGGTCTTGTTTGATTTAATTTCCTTCCACTTTTGGCTTTTGCAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCCTTTTTTTCTTTTTTCTGGCTTATGAATTTGGCGAATCTTTTAATGCAGAGATTTATGTTGCTAAGTAAAGTCAACATTATAAACTTGAAACGTGATTTAATAACTGATGAGAGGAATTGGTTGTGTCTGCCTGTTCTGAGATTGCTCTGTTTGTGCTGTAGTGCACGTCTAGCCTTGAGCCAAATTGTTATGTCGGCAACACATCCATATGTCGAATGTGTAGTAGAATATTTTTCCGTGGTCTTTGGTTTCATATACAAATGCACAGCATACAAACATTTGTATTTGAAACGTGGAAGTTTCGTTGGTGGAACTTTTCATTAGGTTACTTGTGTTCATTCCATTCCTTGTTTTGTTTTCCCCTGATTCTTGAAACGTTTTCAGTATAAAATATTGCACATTGAATAAGTCTCTCTGGACTGAACTTCGTTACTTTGTGTTTTTGGAATCTGGCGATAAAGTAATCGATGTCATTAGGGATATGGCCTTGCTACAATATCAGGTTCCACAATGAGTCTTAACGACTATTCAATCGGAAGGATGTCGATTTTCTCATGATACTCGGTTGAAAGTTGACAGTGCATAGATTATATGATAAGTTTTCTTTAAAAGAAATGAAGAATTTACAATCACACAGCAATCTTTAAGGTGTTATATAGTCATCGGGCCTGGCGTTCTTTTAGATCTTCCCAGCCATTTTTTTTGACTCTTTCGTTCATAACACCAATCAATTTGTTTTTGCCAAGTGAATGTATTTCATAACGCCCACACCAATCACACCTATTCTGTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

mRNA sequence

AAATTTCTTCGCTCGCGAAAAGCTTTGGAGCCATCGTTGTCCCGGTTAGAATCAAGAAACGAGAAGAATCACATACTTACCAACAATCTATCTTGTTTTCTGAAGAAGAATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAAGCTTGATGATGAAATTTGCATAATTATTTGATGATGGTAGAAGGAAATAGTCATGGTGACGAAATGGCCATCCGGGCAGTGTTGCGAGTTGGAAGCGATTCAAACATGATTCTGTAAAGTCATCGACCCGAACAGCTAAAAGTTACTTTCACGCCCATTGACGATACATTTGACTGTAATTGGCATTTAAAGCTGATTACATAACAATTATACAGCCCTTCTAGTGTAATGATAATAAAAACATGATATCTATTTTCATATT

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCACACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ

Homology

[Close]

BLAST of Carg03011-RA vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 6.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-51
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 7.1e-51
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011-RA vs. NCBI nr
Match: XP_020411465.1 (transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypothetical protein PRUPE_1G536300 [Prunus persica])

HSP 1 Score: 208.8 bits (530), Expect = 9.3e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. NCBI nr
Match: XP_008219223.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDS ETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSSETVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. TAIR10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S))

HSP 1 Score: 197.6 bits (501), Expect = 3.9e-51
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. Swiss-Prot
Match: sp|Q39236|T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.0e-50
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. Swiss-Prot
Match: sp|A2XZI2|T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011-RA vs. Swiss-Prot
Match: sp|Q0DLD3|T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-48
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Carg03011-RA vs. Swiss-Prot
Match: sp|O74948|T2AG_SCHPO (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 52/99 (52.53%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ +F+ ++   T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]

BLAST of Carg03011-RA vs. Swiss-Prot
Match: sp|Q54ND1|T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-24
Identity = 55/101 (54.46%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K + KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E ++   V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]

BLAST of Carg03011-RA vs. TrEMBL
Match: tr|A0A251RHK1|A0A251RHK1_PRUPE (Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE_1G536300 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. TrEMBL
Match: tr|M5XZ20|M5XZ20_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 68  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 127

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQETVGR+KIVACDSKLLTQ
Sbjct: 128 GHLHTYRFCDNVWTFILQDALFKNEDSQETVGRVKIVACDSKLLTQ 173

[Close]

BLAST of Carg03011-RA vs. TrEMBL
Match: tr|I1JH19|I1JH19_SOYBN (Transcription initiation factor IIA subunit 2 OS=Glycine max OX=3847 GN=100814623 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. TrEMBL
Match: tr|V7B6T1|V7B6T1_PHAVU (Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G183300g PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

[Close]

BLAST of Carg03011-RA vs. TrEMBL
Match: tr|A0A1S3VVM5|A0A1S3VVM5_VIGRR (Transcription initiation factor IIA subunit 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778943 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 107
           GHLHTYRFCDNVWTFILQDA FKNEDSQE VGR+KIVACDSKLLTQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of Carg03011-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936677.1	6.4e-52	100.00	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]
XP_022941425.1	1.4e-51	99.06	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]
XP_022133819.1	7.1e-51	98.11	transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382...	[more]
XP_020411465.1	9.3e-51	97.17	transcription initiation factor IIA subunit 2 [Prunus persica] >ONI35447.1 hypot...	[more]
XP_008219223.1	3.5e-50	96.23	PREDICTED: transcription initiation factor IIA subunit 2 [Prunus mume]	[more]

BLAST of Carg03011-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24440.1	3.9e-51	91.51	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

BLAST of Carg03011-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39236\|T2AG_ARATH	7.0e-50	91.51	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|A2XZI2\|T2AG_ORYSI	3.8e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
sp\|Q0DLD3\|T2AG_ORYSJ	3.8e-48	87.74	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|O74948\|T2AG_SCHPO	1.9e-26	52.53	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
sp\|Q54ND1\|T2AG_DICDI	1.0e-24	54.46	Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446...	[more]

BLAST of Carg03011-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251RHK1\|A0A251RHK1_PRUPE	6.1e-51	97.17	Transcription initiation factor IIA subunit 2 OS=Prunus persica OX=3760 GN=PRUPE...	[more]
tr\|M5XZ20\|M5XZ20_PRUPE	6.1e-51	97.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa012329mg PE=4 SV=1	[more]
tr\|I1JH19\|I1JH19_SOYBN	2.3e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Glycine max OX=3847 GN=10081462...	[more]
tr\|V7B6T1\|V7B6T1_PHAVU	2.3e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Phaseolus vulgaris OX=3885 GN=P...	[more]
tr\|A0A1S3VVM5\|A0A1S3VVM5_VIGRR	2.3e-50	96.23	Transcription initiation factor IIA subunit 2 OS=Vigna radiata var. radiata OX=3...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0005672	transcription factor TFIIA complex

Vocabulary: **INTERPRO**
Term	Definition
IPR015871	TFIIA_gsu_C
IPR009083	TFIIA_a-hlx
IPR015872	TFIIA_gsu_N
IPR009088	TFIIA_b-brl
IPR003194	TFIIA_gsu

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03011	Carg03011	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03011-RA	Carg03011-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03011-RA.three_prime_UTR.1	Carg03011-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03011-RA.CDS.3	Carg03011-RA.CDS.3	CDS
Carg03011-RA.CDS.2	Carg03011-RA.CDS.2	CDS
Carg03011-RA.CDS.1	Carg03011-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03011-RA.five_prime_UTR.2	Carg03011-RA.five_prime_UTR.2	five_prime_UTR
Carg03011-RA.five_prime_UTR.1	Carg03011-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03011-RA.exon.4	Carg03011-RA.exon.4	exon
Carg03011-RA.exon.3	Carg03011-RA.exon.3	exon
Carg03011-RA.exon.2	Carg03011-RA.exon.2	exon
Carg03011-RA.exon.1	Carg03011-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003194	Transcription initiation factor IIA, gamma subunit	PIRSF	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 e-value: 2.6E-49 score: 163.9
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 2..104
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	G3DSA:2.30.18.10		coord: 55..106 e-value: 4.0E-25 score: 89.3
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	SSF50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..102
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 e-value: 1.7E-23 score: 82.2
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PRODOM	PD009224		coord: 1..50 e-value: 4.0E-22 score: 253.0
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..49 e-value: 2.24514E-21 score: 79.9172
IPR009083	Transcription factor IIA, helical	GENE3D	G3DSA:1.10.287.190		coord: 3..54 e-value: 1.4E-23 score: 84.3
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 53..101 e-value: 1.3E-24 score: 85.9
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 57..102 e-value: 1.1484E-22 score: 83.4511
None	No IPR available	PANTHER	PTHR10966:SF0	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 2..104
None	No IPR available	SUPERFAMILY	SSF47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54