Carg02988-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02988-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Isoamylase 3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_008 : 1191622 .. 1193428 (+)
Sequence length	1474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGGCCTTTTGCTGGTATGCATAGGAGGATTTGACTCTATAATCTGCATTTAGTACTTTTCCTCGCCTTCCCTCCCAAAAGAACAAAAATAGATGGGAGAAAAATGAACCGGCAGGTCTTAGAGAACAGGTTTGTCAAAGATGTGTATATGTATACTCACTTAACGGATATCAAGCCATGGAACTTTATGCTATGTTTAGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTTAGTTTCTCTCTTGCCATTTTGTTGCTTCTAATTTCTGTCCAACTTCCATTGAGTTGCTTTAGGCTTGAATTAACTTGGTAGAACTGCATATTTTTCAAACCGTGTTCGTGAATTAGTTCTTACGGGTTTTCGCTTCTCATGCAGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGATACTAACTCTATATTTAATCAAACCATTATTAGGCAGATGAATCAAGTTCTGTACAACATGACAATCGAAGTATCGTGGAAGAAATAAATTATGCAATCTAATGGAGGACGTGTAGAGCTATCCTCGGCATGGAATTCAGGTACCTGTTTTATGTTTATAGCATATTGGGAAAGAATTTTCTTTTTCTTCTGAAACAGATTAGAGTGTTGTTCATTGTTGCAATTACTTTCAACAATTAGATATAAGTGAATAAAATTATGATCATTAGGTATCTATTTTAGAAGGTCTTTTTTATGATTTTTGTTACTTTCGTCTTTGACCGATTGAAATGCATCCTTCTAAAATAAATGGAAGTCTTAGCAAACTTCCTTTTCTCAAGAAACTTGATCTTGATTCATGTAGAAACTCGATCTTGATTCGTGTAGAAACTCAAGATCTATGGTCCTAGTTGAAATAAAGAGAACAAAGTTCATACCGGTATAATTTCTTAGTTGAGTGAAATACCAGAGAATTATTAGGTACCATACGAGCAGGTCTGACAAAAATCTCTGTATAACCTCCTCAATTTCTCCATAAAAGAGCTAGATTAATTTTAACCCTCGGTATTGAAACAAAATTGTTAGGAATACAAACATTATCATTCATTAGTTAGAAGTGTCCTCACAAGGTTTATGAGAGTTTTGCTTGGACGAATATTTGAATATGAAACAAAAAATGATGAGCCTCGATTTCTTAGCAATATGGTTTGGGTGATAAAGATCATAGCCACTACTCTTCTTTCTAATAGAAAGATTACGAGGATAGCTCGAGATAGCTCAAGGGACCTTTATGATGTGATAAAGAGTGGTCTTCATCAACCATTTCACATTCATGGATTGAACTCTAATAGAATATTCTCCGAACAAAAGAAAAATAGAATTAGAACAAATTCTTAACCTAGAAAAACTGGATGGTTATTGTTTGGTACTTTGTTCAACGACAAAATTATAAACCGTCCGGTGAAATTTATGTTAGTATTATGTCAAATAAAATGAATACAATAATATTAGATAGTAATCATATGGAAATCTAGACTACAACAACAGCCTACAGCGCTACAGGTTATATATA

mRNA sequence

ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGATACTAACTCTATATTTAATCAAACCATTATTAGGCAGATGAATCAAGTTCTGTACAACATGACAATCGAAGTATCGTGGAAGAAATAAATTATGCAATCTAATGGAGGACGTGTAGAGCTATCCTCGGCATGGAATTCAGGTACCTGTTTTATGTTTATAGCATATTGGGAAAGAATTTTCTTTTTCTTCTGAAACAGATTAGAGTGTTGTTCATTGTTGCAATTACTTTCAACAATTAGATATAAGTGAATAAAATTATGATCATTAGGTATCTATTTTAGAAGGTCTTTTTTATGATTTTTGTTACTTTCGTCTTTGACCGATTGAAATGCATCCTTCTAAAATAAATGGAAGTCTTAGCAAACTTCCTTTTCTCAAGAAACTTGATCTTGATTCATGTAGAAACTCGATCTTGATTCGTGTAGAAACTCAAGATCTATGGTCCTAGTTGAAATAAAGAGAACAAAGTTCATACCGGTATAATTTCTTAGTTGAGTGAAATACCAGAGAATTATTAGGTACCATACGAGCAGGTCTGACAAAAATCTCTGTATAACCTCCTCAATTTCTCCATAAAAGAGCTAGATTAATTTTAACCCTCGGTATTGAAACAAAATTGTTAGGAATACAAACATTATCATTCATTAGTTAGAAGTGTCCTCACAAGGTTTATGAGAGTTTTGCTTGGACGAATATTTGAATATGAAACAAAAAATGATGAGCCTCGATTTCTTAGCAATATGGTTTGGGTGATAAAGATCATAGCCACTACTCTTCTTTCTAATAGAAAGATTACGAGGATAGCTCGAGATAGCTCAAGGGACCTTTATGATGTGATAAAGAGTGGTCTTCATCAACCATTTCACATTCATGGATTGAACTCTAATAGAATATTCTCCGAACAAAAGAAAAATAGAATTAGAACAAATTCTTAACCTAGAAAAACTGGATGGTTATTGTTTGGTACTTTGTTCAACGACAAAATTATAAACCGTCCGGTGAAATTTATGTTAGTATTATGTCAAATAAAATGAATACAATAATATTAGATAGTAATCATATGGAAATCTAGACTACAACAACAGCCTACAGCGCTACAGGTTATATATA

Coding sequence (CDS)

ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGA

Protein sequence

MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

Homology

[Close]

BLAST of Carg02988-RA vs. NCBI nr
Match: XP_022936809.1 (isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 695 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 754

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 755 YNLAPYSSILLKAKLENELL 774

[Close]

BLAST of Carg02988-RA vs. NCBI nr
Match: XP_022936810.1 (isoamylase 3, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 606 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 665

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 666 YNLAPYSSILLKAKLENELL 685

[Close]

BLAST of Carg02988-RA vs. NCBI nr
Match: XP_022975928.1 (isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 693 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 752

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 753 YNLAPYSSILLKAKLENELL 772

[Close]

BLAST of Carg02988-RA vs. NCBI nr
Match: XP_022975930.1 (isoamylase 3, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 606 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 665

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 666 YNLAPYSSILLKAKLENELL 685

[Close]

BLAST of Carg02988-RA vs. NCBI nr
Match: XP_023535183.1 (isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 693 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 752

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 753 YNLAPYSSILLKAKLENELL 772

[Close]

BLAST of Carg02988-RA vs. TAIR10
Match: AT4G09020.1 (isoamylase 3)

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-25
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 41  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  
Sbjct: 690 FTLHDGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLESPDDFVREGVAGVAD 749

Query: 101 TYNLAPYSSILLKAK 115
           TYN+AP+SSILL++K
Sbjct: 750 TYNVAPFSSILLQSK 764

[Close]

BLAST of Carg02988-RA vs. TAIR10
Match: AT1G03310.2 (debranching enzyme 1)

HSP 1 Score: 50.8 bits (120), Expect = 6.6e-07
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 28  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKW 87
           WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW
Sbjct: 773 WEDPASKFLALEIKSESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKW 832

Query: 88  FRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSSILLK 113
            R+VDT L  P  F ++G   +          Y + PYS  L +
Sbjct: 833 RRLVDTALPFPGFFSVEGETVVAEEPLQQLVVYEMKPYSCTLFE 876

[Close]

BLAST of Carg02988-RA vs. Swiss-Prot
Match: sp|Q9M0S5|ISOA3_ARATH (Isoamylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA3 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 41  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  
Sbjct: 690 FTLHDGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLESPDDFVREGVAGVAD 749

Query: 101 TYNLAPYSSILLKAK 115
           TYN+AP+SSILL++K
Sbjct: 750 TYNVAPFSSILLQSK 764

[Close]

BLAST of Carg02988-RA vs. Swiss-Prot
Match: sp|B9G434|ISOA3_ORYSJ (Isoamylase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISA3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-20
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 41  YRLHDGN-GEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + +HD N G D+YLAFNAHDYFV   +P PP ++ W RVVDTNLESP D V +G+   G 
Sbjct: 707 FTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTGP 766

Query: 101 TYNLAPYSSILLKAK 115
            Y +APYSSILLKAK
Sbjct: 767 KYRIAPYSSILLKAK 781

[Close]

BLAST of Carg02988-RA vs. Swiss-Prot
Match: sp|Q8L735|ISOA2_ARATH (Isoamylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA2 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 28  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKW 87
           WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW
Sbjct: 773 WEDPASKFLALEIKSESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKW 832

Query: 88  FRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSSILLK 113
            R+VDT L  P  F ++G   +          Y + PYS  L +
Sbjct: 833 RRLVDTALPFPGFFSVEGETVVAEEPLQQLVVYEMKPYSCTLFE 876

[Close]

BLAST of Carg02988-RA vs. Swiss-Prot
Match: sp|P10342|ISOA_PSEAY (Isoamylase OS=Pseudomonas amyloderamosa OX=32043 GN=iam PE=1 SV=3)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-05
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 46  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGS 105
           G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+
Sbjct: 702 GDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGT 761

Query: 106 TYNLAPYSSILLKAK 115
           TY     S +LL +K
Sbjct: 762 TYGQCGQSLLLLISK 776

[Close]

BLAST of Carg02988-RA vs. Swiss-Prot
Match: sp|P26501|ISOA_PSEUM (Isoamylase OS=Pseudomonas sp. (strain SMP1) OX=72588 GN=iam PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-05
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 46  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGS 105
           G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+
Sbjct: 702 GDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGT 761

Query: 106 TYNLAPYSSILLKAK 115
           TY     S +LL +K
Sbjct: 762 TYGQCGQSLLLLISK 776

[Close]

BLAST of Carg02988-RA vs. TrEMBL
Match: tr|A0A0A0LE02|A0A0A0LE02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889910 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.5e-33
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHD NGEDVYLAFNAH+YFV+VSLPSPPT RKWFRVVDTNLESP DFVLDGI G+GS+
Sbjct: 696 YTLHDDNGEDVYLAFNAHEYFVNVSLPSPPTKRKWFRVVDTNLESPHDFVLDGIPGVGSS 755

Query: 101 YNLAPYSSILLKAKLENELL 121
           YN+APYSSILLKA LEN+LL
Sbjct: 756 YNVAPYSSILLKANLENDLL 775

[Close]

BLAST of Carg02988-RA vs. TrEMBL
Match: tr|A0A1S2Y9Y4|A0A1S2Y9Y4_CICAR (isoamylase 3, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 706 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 765

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 766 YSIAPYSSILLEAK 779

[Close]

BLAST of Carg02988-RA vs. TrEMBL
Match: tr|A0A1S2Y9X8|A0A1S2Y9X8_CICAR (isoamylase 3, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 682 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 741

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 742 YSIAPYSSILLEAK 755

[Close]

BLAST of Carg02988-RA vs. TrEMBL
Match: tr|A0A1S3E758|A0A1S3E758_CICAR (isoamylase 3, chloroplastic isoform X3 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 614 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 673

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 674 YSIAPYSSILLEAK 687

[Close]

BLAST of Carg02988-RA vs. TrEMBL
Match: tr|A0A164ZKG3|A0A164ZKG3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019290 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.5e-26
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 20  QNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVV 79
           +NW     +ES F A      + LHD NG D+YLAFNAHDYFV V++PSPP  R+WFRVV
Sbjct: 625 KNWD---NYESKFLA------FTLHDSNGGDIYLAFNAHDYFVKVAIPSPPPKRQWFRVV 684

Query: 80  DTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK 115
           DTNL SP DFV DG+ GIG +YN+APYSSILLKAK
Sbjct: 685 DTNLMSPDDFVHDGVPGIGDSYNVAPYSSILLKAK 710

The following BLAST results are available for this feature:

BLAST of Carg02988-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936809.1	3.5e-38	98.75	isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_022936810.1	3.5e-38	98.75	isoamylase 3, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_022975928.1	1.7e-37	97.50	isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022975930.1	1.7e-37	97.50	isoamylase 3, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_023535183.1	1.7e-37	97.50	isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02988-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09020.1	9.2e-25	61.33	isoamylase 3	[more]
AT1G03310.2	6.6e-07	32.69	debranching enzyme 1	[more]

BLAST of Carg02988-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0S5\|ISOA3_ARATH	1.7e-23	61.33	Isoamylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA3 PE=1 SV=2	[more]
sp\|B9G434\|ISOA3_ORYSJ	5.0e-20	61.33	Isoamylase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISA3 PE=...	[more]
sp\|Q8L735\|ISOA2_ARATH	1.2e-05	32.69	Isoamylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA2 PE=1 SV=2	[more]
sp\|P10342\|ISOA_PSEAY	6.0e-05	34.67	Isoamylase OS=Pseudomonas amyloderamosa OX=32043 GN=iam PE=1 SV=3	[more]
sp\|P26501\|ISOA_PSEUM	6.0e-05	34.67	Isoamylase OS=Pseudomonas sp. (strain SMP1) OX=72588 GN=iam PE=1 SV=1	[more]

BLAST of Carg02988-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LE02\|A0A0A0LE02_CUCSA	8.5e-33	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889910 PE=4 SV=1	[more]
tr\|A0A1S2Y9Y4\|A0A1S2Y9Y4_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A1S2Y9X8\|A0A1S2Y9X8_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A1S3E758\|A0A1S3E758_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X3 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A164ZKG3\|A0A164ZKG3_DAUCA	3.5e-26	64.21	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019290 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013780	Glyco_hydro_b

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02988	Carg02988	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02988-RA	Carg02988-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02988-RA.exon.1	Carg02988-RA.exon.1	exon
Carg02988-RA.exon.2	Carg02988-RA.exon.2	exon
Carg02988-RA.exon.3	Carg02988-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02988-RA.CDS.1	Carg02988-RA.CDS.1	CDS
Carg02988-RA.CDS.2	Carg02988-RA.CDS.2	CDS
Carg02988-RA.CDS.3	Carg02988-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02988-RA.three_prime_UTR.1	Carg02988-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013780	Glycosyl hydrolase, all-beta	GENE3D	G3DSA:2.60.40.1180		coord: 37..119 e-value: 3.5E-17 score: 64.4
None	No IPR available	PANTHER	PTHR43002	FAMILY NOT NAMED	coord: 29..114
None	No IPR available	SUPERFAMILY	SSF51011	Glycosyl hydrolase domain	coord: 44..114