Carg02988 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02988
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Isoamylase 3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_008 : 1191622 .. 1193428 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGGCCTTTTGCTGGTATGCATAGGAGGATTTGACTCTATAATCTGCATTTAGTACTTTTCCTCGCCTTCCCTCCCAAAAGAACAAAAATAGATGGGAGAAAAATGAACCGGCAGGTCTTAGAGAACAGGTTTGTCAAAGATGTGTATATGTATACTCACTTAACGGATATCAAGCCATGGAACTTTATGCTATGTTTAGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTTAGTTTCTCTCTTGCCATTTTGTTGCTTCTAATTTCTGTCCAACTTCCATTGAGTTGCTTTAGGCTTGAATTAACTTGGTAGAACTGCATATTTTTCAAACCGTGTTCGTGAATTAGTTCTTACGGGTTTTCGCTTCTCATGCAGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGATACTAACTCTATATTTAATCAAACCATTATTAGGCAGATGAATCAAGTTCTGTACAACATGACAATCGAAGTATCGTGGAAGAAATAAATTATGCAATCTAATGGAGGACGTGTAGAGCTATCCTCGGCATGGAATTCAGGTACCTGTTTTATGTTTATAGCATATTGGGAAAGAATTTTCTTTTTCTTCTGAAACAGATTAGAGTGTTGTTCATTGTTGCAATTACTTTCAACAATTAGATATAAGTGAATAAAATTATGATCATTAGGTATCTATTTTAGAAGGTCTTTTTTATGATTTTTGTTACTTTCGTCTTTGACCGATTGAAATGCATCCTTCTAAAATAAATGGAAGTCTTAGCAAACTTCCTTTTCTCAAGAAACTTGATCTTGATTCATGTAGAAACTCGATCTTGATTCGTGTAGAAACTCAAGATCTATGGTCCTAGTTGAAATAAAGAGAACAAAGTTCATACCGGTATAATTTCTTAGTTGAGTGAAATACCAGAGAATTATTAGGTACCATACGAGCAGGTCTGACAAAAATCTCTGTATAACCTCCTCAATTTCTCCATAAAAGAGCTAGATTAATTTTAACCCTCGGTATTGAAACAAAATTGTTAGGAATACAAACATTATCATTCATTAGTTAGAAGTGTCCTCACAAGGTTTATGAGAGTTTTGCTTGGACGAATATTTGAATATGAAACAAAAAATGATGAGCCTCGATTTCTTAGCAATATGGTTTGGGTGATAAAGATCATAGCCACTACTCTTCTTTCTAATAGAAAGATTACGAGGATAGCTCGAGATAGCTCAAGGGACCTTTATGATGTGATAAAGAGTGGTCTTCATCAACCATTTCACATTCATGGATTGAACTCTAATAGAATATTCTCCGAACAAAAGAAAAATAGAATTAGAACAAATTCTTAACCTAGAAAAACTGGATGGTTATTGTTTGGTACTTTGTTCAACGACAAAATTATAAACCGTCCGGTGAAATTTATGTTAGTATTATGTCAAATAAAATGAATACAATAATATTAGATAGTAATCATATGGAAATCTAGACTACAACAACAGCCTACAGCGCTACAGGTTATATATA

mRNA sequence

ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGATACTAACTCTATATTTAATCAAACCATTATTAGGCAGATGAATCAAGTTCTGTACAACATGACAATCGAAGTATCGTGGAAGAAATAAATTATGCAATCTAATGGAGGACGTGTAGAGCTATCCTCGGCATGGAATTCAGGTACCTGTTTTATGTTTATAGCATATTGGGAAAGAATTTTCTTTTTCTTCTGAAACAGATTAGAGTGTTGTTCATTGTTGCAATTACTTTCAACAATTAGATATAAGTGAATAAAATTATGATCATTAGGTATCTATTTTAGAAGGTCTTTTTTATGATTTTTGTTACTTTCGTCTTTGACCGATTGAAATGCATCCTTCTAAAATAAATGGAAGTCTTAGCAAACTTCCTTTTCTCAAGAAACTTGATCTTGATTCATGTAGAAACTCGATCTTGATTCGTGTAGAAACTCAAGATCTATGGTCCTAGTTGAAATAAAGAGAACAAAGTTCATACCGGTATAATTTCTTAGTTGAGTGAAATACCAGAGAATTATTAGGTACCATACGAGCAGGTCTGACAAAAATCTCTGTATAACCTCCTCAATTTCTCCATAAAAGAGCTAGATTAATTTTAACCCTCGGTATTGAAACAAAATTGTTAGGAATACAAACATTATCATTCATTAGTTAGAAGTGTCCTCACAAGGTTTATGAGAGTTTTGCTTGGACGAATATTTGAATATGAAACAAAAAATGATGAGCCTCGATTTCTTAGCAATATGGTTTGGGTGATAAAGATCATAGCCACTACTCTTCTTTCTAATAGAAAGATTACGAGGATAGCTCGAGATAGCTCAAGGGACCTTTATGATGTGATAAAGAGTGGTCTTCATCAACCATTTCACATTCATGGATTGAACTCTAATAGAATATTCTCCGAACAAAAGAAAAATAGAATTAGAACAAATTCTTAACCTAGAAAAACTGGATGGTTATTGTTTGGTACTTTGTTCAACGACAAAATTATAAACCGTCCGGTGAAATTTATGTTAGTATTATGTCAAATAAAATGAATACAATAATATTAGATAGTAATCATATGGAAATCTAGACTACAACAACAGCCTACAGCGCTACAGGTTATATATA

Coding sequence (CDS)

ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGA

Protein sequence

MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

Homology

[Close]

BLAST of Carg02988 vs. NCBI nr
Match: XP_022936809.1 (isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 695 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 754

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 755 YNLAPYSSILLKAKLENELL 774

[Close]

BLAST of Carg02988 vs. NCBI nr
Match: XP_022936810.1 (isoamylase 3, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 606 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 665

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 666 YNLAPYSSILLKAKLENELL 685

[Close]

BLAST of Carg02988 vs. NCBI nr
Match: XP_022975928.1 (isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 693 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 752

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 753 YNLAPYSSILLKAKLENELL 772

[Close]

BLAST of Carg02988 vs. NCBI nr
Match: XP_022975930.1 (isoamylase 3, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 606 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 665

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 666 YNLAPYSSILLKAKLENELL 685

[Close]

BLAST of Carg02988 vs. NCBI nr
Match: XP_023535183.1 (isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGST
Sbjct: 693 YTLHDGNGEDVYLAFNAHDYFVSVSLPSPPTKRKWFRVVDTNLESPQDFVLDGIRGIGST 752

Query: 101 YNLAPYSSILLKAKLENELL 121
           YNLAPYSSILLKAKLENELL
Sbjct: 753 YNLAPYSSILLKAKLENELL 772

[Close]

BLAST of Carg02988 vs. TAIR10
Match: AT4G09020.1 (isoamylase 3)

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-25
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 41  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  
Sbjct: 690 FTLHDGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLESPDDFVREGVAGVAD 749

Query: 101 TYNLAPYSSILLKAK 115
           TYN+AP+SSILL++K
Sbjct: 750 TYNVAPFSSILLQSK 764

[Close]

BLAST of Carg02988 vs. TAIR10
Match: AT1G03310.2 (debranching enzyme 1)

HSP 1 Score: 50.8 bits (120), Expect = 6.6e-07
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 28  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKW 87
           WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW
Sbjct: 773 WEDPASKFLALEIKSESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKW 832

Query: 88  FRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSSILLK 113
            R+VDT L  P  F ++G   +          Y + PYS  L +
Sbjct: 833 RRLVDTALPFPGFFSVEGETVVAEEPLQQLVVYEMKPYSCTLFE 876

[Close]

BLAST of Carg02988 vs. Swiss-Prot
Match: sp|Q9M0S5|ISOA3_ARATH (Isoamylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA3 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 41  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  
Sbjct: 690 FTLHDGIGGRDIYVAFNAHDYFVKALIPQPPPGKQWFRVADTNLESPDDFVREGVAGVAD 749

Query: 101 TYNLAPYSSILLKAK 115
           TYN+AP+SSILL++K
Sbjct: 750 TYNVAPFSSILLQSK 764

[Close]

BLAST of Carg02988 vs. Swiss-Prot
Match: sp|B9G434|ISOA3_ORYSJ (Isoamylase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISA3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-20
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 41  YRLHDGN-GEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS 100
           + +HD N G D+YLAFNAHDYFV   +P PP ++ W RVVDTNLESP D V +G+   G 
Sbjct: 707 FTVHDHNSGGDIYLAFNAHDYFVDAVIPPPPHHKCWNRVVDTNLESPNDIVPEGVPFTGP 766

Query: 101 TYNLAPYSSILLKAK 115
            Y +APYSSILLKAK
Sbjct: 767 KYRIAPYSSILLKAK 781

[Close]

BLAST of Carg02988 vs. Swiss-Prot
Match: sp|Q8L735|ISOA2_ARATH (Isoamylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA2 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 28  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKW 87
           WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW
Sbjct: 773 WEDPASKFLALEIKSESEEEETASLAEPNEPKSNDLFIGFNASDHPESVVLPSLPDGSKW 832

Query: 88  FRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSSILLK 113
            R+VDT L  P  F ++G   +          Y + PYS  L +
Sbjct: 833 RRLVDTALPFPGFFSVEGETVVAEEPLQQLVVYEMKPYSCTLFE 876

[Close]

BLAST of Carg02988 vs. Swiss-Prot
Match: sp|P10342|ISOA_PSEAY (Isoamylase OS=Pseudomonas amyloderamosa OX=32043 GN=iam PE=1 SV=3)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-05
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 46  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGS 105
           G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+
Sbjct: 702 GDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGT 761

Query: 106 TYNLAPYSSILLKAK 115
           TY     S +LL +K
Sbjct: 762 TYGQCGQSLLLLISK 776

[Close]

BLAST of Carg02988 vs. Swiss-Prot
Match: sp|P26501|ISOA_PSEUM (Isoamylase OS=Pseudomonas sp. (strain SMP1) OX=72588 GN=iam PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.0e-05
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 46  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGS 105
           G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+
Sbjct: 702 GDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGT 761

Query: 106 TYNLAPYSSILLKAK 115
           TY     S +LL +K
Sbjct: 762 TYGQCGQSLLLLISK 776

[Close]

BLAST of Carg02988 vs. TrEMBL
Match: tr|A0A0A0LE02|A0A0A0LE02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889910 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.5e-33
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           Y LHD NGEDVYLAFNAH+YFV+VSLPSPPT RKWFRVVDTNLESP DFVLDGI G+GS+
Sbjct: 696 YTLHDDNGEDVYLAFNAHEYFVNVSLPSPPTKRKWFRVVDTNLESPHDFVLDGIPGVGSS 755

Query: 101 YNLAPYSSILLKAKLENELL 121
           YN+APYSSILLKA LEN+LL
Sbjct: 756 YNVAPYSSILLKANLENDLL 775

[Close]

BLAST of Carg02988 vs. TrEMBL
Match: tr|A0A1S2Y9Y4|A0A1S2Y9Y4_CICAR (isoamylase 3, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 706 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 765

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 766 YSIAPYSSILLEAK 779

[Close]

BLAST of Carg02988 vs. TrEMBL
Match: tr|A0A1S2Y9X8|A0A1S2Y9X8_CICAR (isoamylase 3, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 682 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 741

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 742 YSIAPYSSILLEAK 755

[Close]

BLAST of Carg02988 vs. TrEMBL
Match: tr|A0A1S3E758|A0A1S3E758_CICAR (isoamylase 3, chloroplastic isoform X3 OS=Cicer arietinum OX=3827 GN=LOC101496876 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.2e-27
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 41  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST 100
           + LHD NGED+YLAFNAHDYF+ VSLP+PPT R+WFRVVDTNL+SP DFVLDG+  +G T
Sbjct: 614 FTLHDRNGEDIYLAFNAHDYFLEVSLPTPPTKRRWFRVVDTNLKSPDDFVLDGVPKVGKT 673

Query: 101 YNLAPYSSILLKAK 115
           Y++APYSSILL+AK
Sbjct: 674 YSIAPYSSILLEAK 687

[Close]

BLAST of Carg02988 vs. TrEMBL
Match: tr|A0A164ZKG3|A0A164ZKG3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019290 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.5e-26
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 20  QNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVV 79
           +NW     +ES F A      + LHD NG D+YLAFNAHDYFV V++PSPP  R+WFRVV
Sbjct: 625 KNWD---NYESKFLA------FTLHDSNGGDIYLAFNAHDYFVKVAIPSPPPKRQWFRVV 684

Query: 80  DTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK 115
           DTNL SP DFV DG+ GIG +YN+APYSSILLKAK
Sbjct: 685 DTNLMSPDDFVHDGVPGIGDSYNVAPYSSILLKAK 710

The following BLAST results are available for this feature:

BLAST of Carg02988 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936809.1	3.5e-38	98.75	isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_022936810.1	3.5e-38	98.75	isoamylase 3, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_022975928.1	1.7e-37	97.50	isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022975930.1	1.7e-37	97.50	isoamylase 3, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_023535183.1	1.7e-37	97.50	isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg02988 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09020.1	9.2e-25	61.33	isoamylase 3	[more]
AT1G03310.2	6.6e-07	32.69	debranching enzyme 1	[more]

BLAST of Carg02988 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0S5\|ISOA3_ARATH	1.7e-23	61.33	Isoamylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA3 PE=1 SV=2	[more]
sp\|B9G434\|ISOA3_ORYSJ	5.0e-20	61.33	Isoamylase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISA3 PE=...	[more]
sp\|Q8L735\|ISOA2_ARATH	1.2e-05	32.69	Isoamylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA2 PE=1 SV=2	[more]
sp\|P10342\|ISOA_PSEAY	6.0e-05	34.67	Isoamylase OS=Pseudomonas amyloderamosa OX=32043 GN=iam PE=1 SV=3	[more]
sp\|P26501\|ISOA_PSEUM	6.0e-05	34.67	Isoamylase OS=Pseudomonas sp. (strain SMP1) OX=72588 GN=iam PE=1 SV=1	[more]

BLAST of Carg02988 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LE02\|A0A0A0LE02_CUCSA	8.5e-33	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889910 PE=4 SV=1	[more]
tr\|A0A1S2Y9Y4\|A0A1S2Y9Y4_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A1S2Y9X8\|A0A1S2Y9X8_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A1S3E758\|A0A1S3E758_CICAR	9.2e-27	74.32	isoamylase 3, chloroplastic isoform X3 OS=Cicer arietinum OX=3827 GN=LOC10149687...	[more]
tr\|A0A164ZKG3\|A0A164ZKG3_DAUCA	3.5e-26	64.21	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019290 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013780	Glyco_hydro_b

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02988-RA	Carg02988-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013780	Glycosyl hydrolase, all-beta	GENE3D	G3DSA:2.60.40.1180		coord: 37..119 e-value: 3.5E-17 score: 64.4
None	No IPR available	PANTHER	PTHR43002	FAMILY NOT NAMED	coord: 29..114
None	No IPR available	SUPERFAMILY	SSF51011	Glycosyl hydrolase domain	coord: 44..114

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02988	Cucurbita pepo (Zucchini)	carcpeB0894
Carg02988	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02988	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02988	Cucurbita pepo (Zucchini)	carcpeB0907
Carg02988	Wild cucumber (PI 183967)	carcpiB0665
Carg02988	Wild cucumber (PI 183967)	carcpiB0662
Carg02988	Cucumber (Chinese Long) v2	carcuB0652
Carg02988	Cucumber (Chinese Long) v2	carcuB0655
Carg02988	Cucumber (Chinese Long) v3	carcucB0663
Carg02988	Cucumber (Chinese Long) v3	carcucB0666
Carg02988	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02988	Bottle gourd (USVL1VR-Ls)	carlsiB579
Carg02988	Melon (DHL92) v3.5.1	carmeB0630
Carg02988	Melon (DHL92) v3.5.1	carmeB0631
Carg02988	Melon (DHL92) v3.6.1	carmedB0639
Carg02988	Melon (DHL92) v3.6.1	carmedB0640
Carg02988	Watermelon (Charleston Gray)	carwcgB0610
Carg02988	Watermelon (Charleston Gray)	carwcgB0617
Carg02988	Watermelon (97103) v1	carwmB0627
Carg02988	Watermelon (97103) v1	carwmB0634
Carg02988	Watermelon (97103) v2	carwmbB0655
Carg02988	Watermelon (97103) v2	carwmbB0656
Carg02988	Watermelon (97103) v2	carwmbB0664
Carg02988	Wax gourd	carwgoB0749
Carg02988	Wax gourd	carwgoB0751
Carg02988	Wax gourd	carwgoB0752
Carg02988	Silver-seed gourd	carcarB066
Carg02988	Silver-seed gourd	carcarB424
Carg02988	Cucumber (Gy14) v2	carcgybB0629
Carg02988	Cucumber (Gy14) v2	carcgybB0632
Carg02988	Cucumber (Gy14) v1	carcgyB0707
Carg02988	Cucumber (Gy14) v1	carcgyB0712
Carg02988	Cucurbita maxima (Rimu)	carcmaB0889
Carg02988	Cucurbita maxima (Rimu)	carcmaB0892
Carg02988	Cucurbita maxima (Rimu)	carcmaB0894
Carg02988	Cucurbita maxima (Rimu)	carcmaB0900
Carg02988	Cucurbita moschata (Rifu)	carcmoB0865
Carg02988	Cucurbita moschata (Rifu)	carcmoB0868
Carg02988	Cucurbita moschata (Rifu)	carcmoB0870
Carg02988	Cucurbita moschata (Rifu)	carcmoB0877