Carg02833-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02833-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_008 : 284844 .. 288158 (-)
Sequence length	3315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCTAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCGAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAGATCCGGAGCAAGCGACGGTGGCGGTAAAAGAGAAGATGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCAGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCGGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCATGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTACTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGGGGTGGCCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATAGAAGAATGGTTTCAGAAGGGCTTAAGCCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAAGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATCAGAGTGCTAGGGAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACAGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATCTGGACACTGTCAAAGAATTTTGGAGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGATGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAATATCGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAAACGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTTTAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGAACTTTGGTTGAAGCTGAGATAGACAAGGCTGTTATATTTGCTGAAGAATTGGTACTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTTGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTCGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCAAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTACTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGACGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCAGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTTTGGTAGAATGCCTTTGCCTTGCTGGAAAAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCGCAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGGCTTGCTGGAATGGTGGAAGAAGCCGAGAGAATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAACGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGATCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

mRNA sequence

ATGTCCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCTAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCGAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAGATCCGGAGCAAGCGACGGTGGCGGTAAAAGAGAAGATGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCAGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCGGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCATGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTACTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGGGGTGGCCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATAGAAGAATGGTTTCAGAAGGGCTTAAGCCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAAGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATCAGAGTGCTAGGGAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACAGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATCTGGACACTGTCAAAGAATTTTGGAGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGATGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAATATCGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAAACGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTTTAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGAACTTTGGTTGAAGCTGAGATAGACAAGGCTGTTATATTTGCTGAAGAATTGGTACTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTTGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTCGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCAAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTACTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGACGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCAGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTTTGGTAGAATGCCTTTGCCTTGCTGGAAAAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCGCAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGGCTTGCTGGAATGGTGGAAGAAGCCGAGAGAATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAACGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGATCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

Coding sequence (CDS)

ATGTCCAGCACTTGTTGCAATGGTGCTTTTAGTAATTGTCAGATATACGCTTCTAGTTGTAGTGGATCATCGAGAGGATTGATATCGGAAAATCTGGGGGATTTTCGAACTGCGACTTTGTCTATGGCGAATTGGAAGAAGCACAGGAAGAAGCGGAAGAATGTTTGCCGGTTTGCGTTGCAAGATCCGGAGCAAGCGACGGTGGCGGTAAAAGAGAAGATGAAAATTCCAGTGTCCGAAGAGGAAATTCTTCAGGCTTTGAAATCGATGACGGATACTACGCGTGCTCTTTCTTATTTTTACTCGGTACCTGATTTTCCTTGTGTTCAGCATACCACTGAGACGTGCAATTTCATGCTTGAATTCTTAAGAGTTCATGAGAAGGTGGAGGATATGGCTACTGTTTTTGAATTTATGCAGAAGAAAATTATTAGGAGGGATTTGAGCACTTATTTGACTATCTTTAAAGCTCTTTCCATCAGGGGTGGCCTTCGGCAGGTGACGATTGCGCTAAAGAAGATGAGAAAAGCTGGATTTGTCTTGAATGCATATTCATACAACGGATTGATCCATTTGTTGATTCAATCAGGATTCTGTAGTGAGGCCTTGGAAGTTTATAGAAGAATGGTTTCAGAAGGGCTTAAGCCGAGCCTGAAGACGTATTCGGCACTTATGGTTGCGTTGGGAAAGAAGAGGGACTCGGAAACGGTAATGGTTCTGTTGAAAGAGATGGAAAGTTTGGGATTGAGACCAAATGTTTACACTTATACAATATGCATCAGAGTGCTAGGGAGGGCTGGGAAAATCGACGAGGCGTATGAGATATTTAGGAGAATGGACGAGGAAGGTTGTGGACCCGACCTTGTTACGTATACAGTCCTCATCGACGCTCTTTGTAATGCAGGACGGTTGGAAAGTGCCAAGGAGTTGTTTGTGAAGATGAAAGCTAATGGTCACAAACCTGATCAAGTAATCTACATTACTTTGTTAGATAAGTTCAATGATTTTGGAGATCTGGACACTGTCAAAGAATTTTGGAGTCAGATGGAAGCTGATGGATATATGCCCGATGTCGTTACCTTCACTATTCTCGTTGACACCTTATGCAAAGCCAGAGACTTCGATGAGGCGTTCGCTACCTTTGATGTCATGAGAAAGCAAGGCATCTTGCCAAATCTTCATACTTATAACACACTTATTTGTGGACTTCTGAAGGCAGGTAGAATTGAGGATGCACTAAAGCTTTTAGATACCATGGAATCCTTAGGTGTTCAGCCGACTGCTTATACGTACGTTATTTTTATCGACTATTTCGGAAAGTCCGGAGATACTGGCAAAGCTGTTGAGACCTTTGAGAAGATGAAAGCTAGAGGAATCGTTCCAAATATCGTAGCGTGCAATGCATCGTTGTATAGCCTTGCTGAAACGGGGAGGTTGAGAGAAGCAAAAAACATGTTCAATGGGCTAAGAGAGAATGGTCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAGTGCTACAGCAAAGTAGGACAAGTAGACGACGCCGTGAATTTACTTTTCGAGATGATAAAAAATGGATGTGAACCTGATGTGATTGTGGTTAACTCTTTGATCGATTCGCTTTACAAGGCGGGACGAGTTGATGAAGCATGGAAAATGTTCGACAGAATGAAGGACATGAAGCTTTCTCCAACAGTTGTGACGTTTAATACGTTACTCTCTGGATTAGGGAAAGAGGGTCGAGTCCAGAAAGCCATTGAATTATTCGAAAGTATGATTAAGCAAAGGTGTTCTCCGAACACGATATCGTTTAACACGCTCCTGGATTGCTTTTGCAAAAACGACGAGATTGAATTGGCTTTGGAAATGTTTTCTAAAATGACAGAAATGGACTGTAAACCTGATGTCTTGACTTACAACACTGTTATTTATGGGCTGATCAAAGAAAACAGAGTAAATTATGCATTCTGGTTCTTCCACCAGTTGAAGAAATCGATGTACCCCGATCATGTCACAATATGTACCCTCCTTCCCGGTATCGTGAAGAGCGGGCGGATAGGGGATGCTATAAAGATTGCAAAGGATTTCATCAACCAGGTCCAGTTTCGTGTAAATAGATCCTTTTGGGAAGATTTAATGGGAGGAACTTTGGTTGAAGCTGAGATAGACAAGGCTGTTATATTTGCTGAAGAATTGGTACTGAATGGGATTTGCAGGGAAGACTCATTCTTGATACCTCTAATTAGAGTTTTGTGTAAGCAAAAGAGAGCACTTTATGCTTATCAAATATTTGAGAACTTCACGACGAATCTCGAAATCAAACCGACAGTGGCATCATATAATTGTTTGATAGGTGAGCTTCTTGAAGTTCATTACACCGAAAAGGCCTGGGATCTGTTTCAGGATATGAAGAACGCCGCCTGTGCTCCTGATACTTTTACCTACAACATGTTGCTCGATGTTCATGGAAAGTCGGGGAAGATCGCCGAACTTTTTGAACTGTACAATGAGATGGTTTCGAGGAAATGCAAGCCAAACGTCATAACTTACAACATCGTCATCTCCAGCCTTGCAAAATCTAATAACTTGGATAAAGCTTTAGATTTTTACTATGATCTTGTTAGTAGTGATTTCTGCCCCACTCCTTGTACGTACGGCCCTCTGCTCGACGGACTAGCAAAAGCGGGGCGCTTAGAGGAAGCGATGCAGCTCTTCGAAGAGATGCCAGACTATGGATGCAAGCCAAACTGTGCAATATTCAACATTCTGATAAATGGATATGGGAAAACAGGTGACATAGAAATCGCTCATCAGTTGTTTAAAAGGATGGTGAAGGAGGGTATAAGGCCAGACTTGAAGTCATACACCATTTTGGTAGAATGCCTTTGCCTTGCTGGAAAAGTAGATGAAGCCTTATACTATTTCGAGGAGCTGAAATCAACCGGTCTTGATCCCGACTTTATCGCTTATAATCGTATAATAAACGGTCTAGGAAAATCGCAGAGGATGGAGGAAGCGCTCGCTTTATACAGCGAAATGCGAGAGAGAGGCATTGTTCCTGACCTGCACACATATAATGCAATGTTGCTTTATCTTGGGCTTGCTGGAATGGTGGAAGAAGCCGAGAGAATGTATGAAGAGCTTCAACTTGCAGGGCTAGAACCAGATGTCTTTACTTATAACGCTCTCATTCGAGGGTACAGCGTGTCGGGGAACCCCGAGCATGCTTATACGATCTACAAGAACATGATGGTCGATGGCTGCAACCCCAACGACGGTACGTACGCACAGCTCCCTAATCCATCTTGA

Protein sequence

MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFALQDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFMLEFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFVLNAYSYNGLIHLLIQSGFCSEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSETVMVLLKEMESLGLRPNVYTYTICIRVLGRAGKIDEAYEIFRRMDEEGCGPDLVTYTVLIDALCNAGRLESAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTVKEFWSQMEADGYMPDVVTFTILVDTLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLKAGRIEDALKLLDTMESLGVQPTAYTYVIFIDYFGKSGDTGKAVETFEKMKARGIVPNIVACNASLYSLAETGRLREAKNMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDDAVNLLFEMIKNGCEPDVIVVNSLIDSLYKAGRVDEAWKMFDRMKDMKLSPTVVTFNTLLSGLGKEGRVQKAIELFESMIKQRCSPNTISFNTLLDCFCKNDEIELALEMFSKMTEMDCKPDVLTYNTVIYGLIKENRVNYAFWFFHQLKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNCLIGELLEVHYTEKAWDLFQDMKNAACAPDTFTYNMLLDVHGKSGKIAELFELYNEMVSRKCKPNVITYNIVISSLAKSNNLDKALDFYYDLVSSDFCPTPCTYGPLLDGLAKAGRLEEAMQLFEEMPDYGCKPNCAIFNILINGYGKTGDIEIAHQLFKRMVKEGIRPDLKSYTILVECLCLAGKVDEALYYFEELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYSEMRERGIVPDLHTYNAMLLYLGLAGMVEEAERMYEELQLAGLEPDVFTYNALIRGYSVSGNPEHAYTIYKNMMVDGCNPNDGTYAQLPNPS

Homology

[Close]

BLAST of Carg02833-RA vs. NCBI nr
Match: XP_023536419.1 (pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 513.5 bits (1321), Expect = 1.8e-141
Identity = 777/809 (96.04%), Postives = 782/809 (96.66%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M STCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL
Sbjct: 11  MFSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PE+ATVAVKEK KIPVSEEEIL+ALKSMTDTTRALSYFYSVPDFPCVQHTTETCNF+L
Sbjct: 71  QNPEEATVAVKEKTKIPVSEEEILRALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFVL 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVHEKVEDMA VFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV
Sbjct: 131 EFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFCSEALEVY RMV                       XXXXXXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCSEALEVYGRMVSEGLKPSLKTYSALMVALGKKRDXXXXXXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV
Sbjct: 671 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAEIDKA+IFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA
Sbjct: 731 EAEIDKAIIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 790

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDMKNAA 810
           SYNCLIGELLEVHYTEKAWDLFQDMKNAA
Sbjct: 791 SYNCLIGELLEVHYTEKAWDLFQDMKNAA 819

[Close]

BLAST of Carg02833-RA vs. NCBI nr
Match: XP_022937237.1 (pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita moschata])

HSP 1 Score: 513.1 bits (1320), Expect = 2.4e-141
Identity = 800/811 (98.64%), Postives = 804/811 (99.14%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M STCCNGAFSNCQI ASSCSGSSRGLISENLG FRTATLSMANWKKHRKKRKNVCRFAL
Sbjct: 11  MFSTCCNGAFSNCQISASSCSGSSRGLISENLGGFRTATLSMANWKKHRKKRKNVCRFAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PE+ TVAVKEK KIPVSEEEIL+ALKSMTDTT ALSYFYS+PDFPCVQHTTETCNFML
Sbjct: 71  QNPEEVTVAVKEKTKIPVSEEEILRALKSMTDTTHALSYFYSIPDFPCVQHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVHEKVEDMA VFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV
Sbjct: 131 EFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV
Sbjct: 671 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA
Sbjct: 731 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 790

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDMKNAACA 812
           SYNCLIGELLEVHYTEKAWDLFQDMKNAACA
Sbjct: 791 SYNCLIGELLEVHYTEKAWDLFQDMKNAACA 821

[Close]

BLAST of Carg02833-RA vs. NCBI nr
Match: XP_022976228.1 (pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita maxima])

HSP 1 Score: 499.2 bits (1284), Expect = 3.6e-137
Identity = 792/811 (97.66%), Postives = 797/811 (98.27%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M STCCNGAFSNCQIYASSCSGSSRGLISEN GDFRTATLSMANWKKHRKKRKNVCRFAL
Sbjct: 11  MFSTCCNGAFSNCQIYASSCSGSSRGLISENQGDFRTATLSMANWKKHRKKRKNVCRFAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PE+  VAVKEK K PVSEEEIL+ALKSMTDTTRALSYFYS+PDFPCVQHTTETCNFML
Sbjct: 71  QNPEEMMVAVKEKTKNPVSEEEILRALKSMTDTTRALSYFYSIPDFPCVQHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVHEKVEDMA +FEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMR AGFV
Sbjct: 131 EFLRVHEKVEDMAAIFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRTAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFCSEALEVYRR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCSEALEVYRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQF VNRSFWEDLMGGTLV
Sbjct: 671 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFHVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTT LEIKPTV 
Sbjct: 731 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTKLEIKPTVV 790

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDMKNAACA 812
           SYNCLIGELLEVHYTEKAWDLFQDMKN ACA
Sbjct: 791 SYNCLIGELLEVHYTEKAWDLFQDMKNTACA 821

[Close]

BLAST of Carg02833-RA vs. NCBI nr
Match: XP_022142283.1 (pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Momordica charantia])

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-102
Identity = 732/811 (90.26%), Postives = 765/811 (94.33%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M S+CCNGAFS+CQ+ A SC+GSS GLI E LGDF+T +LS+ANWKKHRK+R    R AL
Sbjct: 1   MLSSCCNGAFSDCQMSALSCNGSSGGLIWEKLGDFQTVSLSLANWKKHRKRRTGFFRLAL 60

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PEQ  +AV  K KIPVS +E+L+ LKSM+D  RALSYFYS+ +FP V HTTETCNFML
Sbjct: 61  QNPEQ-VMAVNVKAKIPVSGDEVLRVLKSMSDLARALSYFYSISEFPTVLHTTETCNFML 120

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVHEKVEDMA VFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV
Sbjct: 121 EFLRVHEKVEDMAAVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSG CSEA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 LNAYSYNGLIHLLIQSGSCSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XXX KKSMYPDHVTICTLLPG+VK G+IGDA+ IAKDF++QV+F VNRSFWEDLMGGTLV
Sbjct: 661 XXXLKKSMYPDHVTICTLLPGVVKYGQIGDAVNIAKDFMHQVRFHVNRSFWEDLMGGTLV 720

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAE+DKA+IFAEELVLNGIC+EDSFL+PL+RVLCK KR L+A++IFE FT  L I PT+A
Sbjct: 721 EAEMDKAIIFAEELVLNGICKEDSFLVPLVRVLCKHKRTLHAHKIFEKFTKRLGINPTLA 780

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDMKNAACA 812
           SYNCLIGELLEVHYT+KAWDLF+DMKN ACA
Sbjct: 781 SYNCLIGELLEVHYTKKAWDLFKDMKNGACA 810

[Close]

BLAST of Carg02833-RA vs. NCBI nr
Match: XP_008452843.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 6.4e-102
Identity = 732/805 (90.93%), Postives = 757/805 (94.04%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M  TCCNGAFS CQIY SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11  MFGTCCNGAFSECQIYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PEQ  V VK K +I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNFML
Sbjct: 71  QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVH+KVEDMA VF+ MQKKIIRRDL+TYLTIFKALSIRGGLRQ+T  L KMR+AGFV
Sbjct: 131 EFLRVHDKVEDMAAVFDLMQKKIIRRDLNTYLTIFKALSIRGGLRQMTTVLNKMRRAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFC EA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XX  KKS++PDHVTICTLLPG+VK GRIGDAIKIA+DF+ QV+FRVNRSFWEDLMGGTLV
Sbjct: 671 XXQLKKSIHPDHVTICTLLPGLVKCGRIGDAIKIARDFMYQVRFRVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAE+DKA+IFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIFE FT  L I PT+A
Sbjct: 731 EAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFEKFTKKLGISPTLA 790

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDM 806
           SYNCLIGELLEV YTEKAWDLFQDM
Sbjct: 791 SYNCLIGELLEVRYTEKAWDLFQDM 814

[Close]

BLAST of Carg02833-RA vs. TAIR10
Match: AT4G31850.1 (proton gradient regulation 3)

HSP 1 Score: 136.7 bits (343), Expect = 8.5e-32
Identity = 70/139 (50.36%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 665 KKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEI 724
           KK +YPD VT+CTLLPG+VK+  I DA KI  +F+     +    FWEDL+G  L EA I
Sbjct: 670 KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI 729

Query: 725 DKAVIFAEELVLNGICRE-DSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYN 784
           D AV F+E LV NGICR+ DS L+P+IR  CK      A  +FE FT +L ++P + +YN
Sbjct: 730 DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYN 789

Query: 785 CLIGELLEVHYTEKAWDLF 803
            LIG LLE    E A D+F
Sbjct: 790 LLIGGLLEADMIEIAQDVF 808

[Close]

BLAST of Carg02833-RA vs. Swiss-Prot
Match: sp|Q9SZ52|PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR3 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-30
Identity = 70/139 (50.36%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 665 KKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEI 724
           KK +YPD VT+CTLLPG+VK+  I DA KI  +F+     +    FWEDL+G  L EA I
Sbjct: 670 KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGI 729

Query: 725 DKAVIFAEELVLNGICRE-DSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYN 784
           D AV F+E LV NGICR+ DS L+P+IR  CK      A  +FE FT +L ++P + +YN
Sbjct: 730 DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYN 789

Query: 785 CLIGELLEVHYTEKAWDLF 803
            LIG LLE    E A D+F
Sbjct: 790 LLIGGLLEADMIEIAQDVF 808

[Close]

BLAST of Carg02833-RA vs. TrEMBL
Match: tr|A0A1S3BUU7|A0A1S3BUU7_CUCME (pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493741 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 4.2e-102
Identity = 732/805 (90.93%), Postives = 757/805 (94.04%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M  TCCNGAFS CQIY SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11  MFGTCCNGAFSECQIYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PEQ  V VK K +I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNFML
Sbjct: 71  QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVH+KVEDMA VF+ MQKKIIRRDL+TYLTIFKALSIRGGLRQ+T  L KMR+AGFV
Sbjct: 131 EFLRVHDKVEDMAAVFDLMQKKIIRRDLNTYLTIFKALSIRGGLRQMTTVLNKMRRAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFC EA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XX  KKS++PDHVTICTLLPG+VK GRIGDAIKIA+DF+ QV+FRVNRSFWEDLMGGTLV
Sbjct: 671 XXQLKKSIHPDHVTICTLLPGLVKCGRIGDAIKIARDFMYQVRFRVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAE+DKA+IFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIFE FT  L I PT+A
Sbjct: 731 EAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFEKFTKKLGISPTLA 790

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDM 806
           SYNCLIGELLEV YTEKAWDLFQDM
Sbjct: 791 SYNCLIGELLEVRYTEKAWDLFQDM 814

[Close]

BLAST of Carg02833-RA vs. TrEMBL
Match: tr|A0A1S4DZB2|A0A1S4DZB2_CUCME (pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493741 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 8.0e-101
Identity = 705/805 (87.58%), Postives = 730/805 (90.68%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M  TCCNGAFS CQIY SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11  MFGTCCNGAFSECQIYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PEQ  V VK K +I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNFML
Sbjct: 71  QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVH+KVEDMA VF+ MQKKIIRRDL+TYLTIFKALSIRGGLRQ+T  L KMR+AGFV
Sbjct: 131 EFLRVHDKVEDMAAVFDLMQKKIIRRDLNTYLTIFKALSIRGGLRQMTTVLNKMRRAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFCSEALEVYRRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           LNAYSYNGLIHLLIQSGFC EA                                   XXX
Sbjct: 191 LNAYSYNGLIHLLIQSGFCGEA-----------------------------------XXX 250

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 310

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 371 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 431 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 490

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 491 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 550

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 551 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 610

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 660
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 611 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670

Query: 661 XXXXKKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLV 720
           XX  KKS++PDHVTICTLLPG+VK GRIGDAIKIA+DF+ QV+FRVNRSFWEDLMGGTLV
Sbjct: 671 XXQLKKSIHPDHVTICTLLPGLVKCGRIGDAIKIARDFMYQVRFRVNRSFWEDLMGGTLV 730

Query: 721 EAEIDKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVA 780
           EAE+DKA+IFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIFE FT  L I PT+A
Sbjct: 731 EAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFEKFTKKLGISPTLA 779

Query: 781 SYNCLIGELLEVHYTEKAWDLFQDM 806
           SYNCLIGELLEV YTEKAWDLFQDM
Sbjct: 791 SYNCLIGELLEVRYTEKAWDLFQDM 779

[Close]

BLAST of Carg02833-RA vs. TrEMBL
Match: tr|A0A0A0L492|A0A0A0L492_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651880 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.8e-80
Identity = 159/199 (79.90%), Postives = 172/199 (86.43%), Query Frame = 0


Query: 1   MSSTCCNGAFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVCRFAL 60
           M  TCCNGAFS CQ+Y SSC+ SSRGLI E+LGDF+TATLSM NWKKHRKKRK+ CR AL
Sbjct: 11  MFGTCCNGAFSECQVYVSSCNRSSRGLIWESLGDFQTATLSMVNWKKHRKKRKDFCRLAL 70

Query: 61  QDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETCNFML 120
           Q+PEQ  V VK K +I VSE+E+L  LKSMTD  RALSYFYS+ +FP V HTTETCNFML
Sbjct: 71  QNPEQVMV-VKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFML 130

Query: 121 EFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRKAGFV 180
           EFLRVH+KVEDMA VFEFMQKKIIRRDL TYLTIFKALSIRGGLRQ+T  L KMRKAGFV
Sbjct: 131 EFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFV 190

Query: 181 LNAYSYNGLIHLLIQSGFC 200
           LNAYSYNGLIHLLIQSGFC
Sbjct: 191 LNAYSYNGLIHLLIQSGFC 208

[Close]

BLAST of Carg02833-RA vs. TrEMBL
Match: tr|A0A0A0L5J9|A0A0A0L5J9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651870 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.9e-63
Identity = 118/140 (84.29%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 665 KKSMYPDHVTICTLLPGIVKSGRIGDAIKIAKDFINQVQFRVNRSFWEDLMGGTLVEAEI 724
           KKSM+PDHVTICTLLPG+VK G+IGDAI IA+DF+ QV+FRVNRSFWEDLMGGTLVEAE+
Sbjct: 190 KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEM 249

Query: 725 DKAVIFAEELVLNGICREDSFLIPLIRVLCKQKRALYAYQIFENFTTNLEIKPTVASYNC 784
           DKA+IFAEELVLNGICREDSFLIPL+RVLCK KR LYAYQIF+ FT  L I PT+ASYNC
Sbjct: 250 DKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNC 309

Query: 785 LIGELLEVHYTEKAWDLFQD 805
           LIGELLEVHYTEKAWDLF+D
Sbjct: 310 LIGELLEVHYTEKAWDLFKD 329

[Close]

BLAST of Carg02833-RA vs. TrEMBL
Match: tr|A0A2I4HHB2|A0A2I4HHB2_9ROSI (pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Juglans regia OX=51240 GN=LOC109017823 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.1e-49
Identity = 120/214 (56.07%), Postives = 142/214 (66.36%), Query Frame = 0


Query: 2   SSTCCNG-----AFSNCQIYASSCSGSSRGLISENLGDFRTATLSMANWKKHRKKRKNVC 61
           SS  C G     AF++ +IY  S +GS  G  S +L    +   S  NWKKHR+K    C
Sbjct: 9   SSIFCTGIAYACAFTDSKIYGLSHNGSVGGRSSRHLKTLPSG--STVNWKKHRRKLVGFC 68

Query: 62  RFALQDPEQATVAVKEKMKIPVSEEEILQALKSMTDTTRALSYFYSVPDFPCVQHTTETC 121
            F ++ P+   VA K K    VS EE +  LKS++D   A SYF  V   P V HTTETC
Sbjct: 69  GFVMKSPDGVVVA-KGKPNKAVSSEEFIGVLKSISDPKCAFSYFNYVAQLPSVVHTTETC 128

Query: 122 NFMLEFLRVHEKVEDMATVFEFMQKKIIRRDLSTYLTIFKALSIRGGLRQVTIALKKMRK 181
           NFMLE LR+H +V DMA VF+ MQK+II R++ TYLTIFK L IRGG+R+   AL KMRK
Sbjct: 129 NFMLEVLRIHRRVGDMALVFDLMQKQIINRNMKTYLTIFKGLYIRGGIRRAPSALVKMRK 188

Query: 182 AGFVLNAYSYNGLIHLLIQSGFCSEALEVYRRMV 211
           AGFVLNAYSYNGLIHLL+QSGFC EALEVYR MV
Sbjct: 189 AGFVLNAYSYNGLIHLLLQSGFCREALEVYRGMV 219

The following BLAST results are available for this feature:

BLAST of Carg02833-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536419.1	1.8e-141	96.04	pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita ...	[more]
XP_022937237.1	2.4e-141	98.64	pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita ...	[more]
XP_022976228.1	3.6e-137	97.66	pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Cucurbita ...	[more]
XP_022142283.1	1.7e-102	90.26	pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Momordica ...	[more]
XP_008452843.1	6.4e-102	90.93	PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic ...	[more]

BLAST of Carg02833-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31850.1	8.5e-32	50.36	proton gradient regulation 3	[more]

BLAST of Carg02833-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZ52\|PP344_ARATH	1.5e-30	50.36	Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop...	[more]

BLAST of Carg02833-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUU7\|A0A1S3BUU7_CUCME	4.2e-102	90.93	pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X1 ...	[more]
tr\|A0A1S4DZB2\|A0A1S4DZB2_CUCME	8.0e-101	87.58	pentatricopeptide repeat-containing protein At4g31850, chloroplastic isoform X2 ...	[more]
tr\|A0A0A0L492\|A0A0A0L492_CUCSA	7.8e-80	79.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651880 PE=4 SV=1	[more]
tr\|A0A0A0L5J9\|A0A0A0L5J9_CUCSA	3.9e-63	84.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651870 PE=4 SV=1	[more]
tr\|A0A2I4HHB2\|A0A2I4HHB2_9ROSI	7.1e-49	56.07	pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Juglans ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02833	Carg02833	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02833-RA.CDS.1	Carg02833-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02833-RA.exon.1	Carg02833-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02833-RA	Carg02833-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 781..807 e-value: 0.44 score: 10.8 coord: 536..562 e-value: 1.8E-6 score: 27.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 880..910 e-value: 4.1E-9 score: 35.9 coord: 352..385 e-value: 2.3E-10 score: 39.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 171..230 e-value: 6.4E-9 score: 35.7 coord: 240..298 e-value: 2.3E-13 score: 49.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 920..965 e-value: 8.0E-13 score: 48.3 coord: 987..1031 e-value: 5.5E-13 score: 48.8 coord: 496..533 e-value: 7.3E-11 score: 42.0 coord: 636..682 e-value: 2.8E-7 score: 30.5 coord: 566..615 e-value: 1.1E-16 score: 60.6 coord: 812..861 e-value: 4.0E-16 score: 58.8 coord: 391..438 e-value: 1.5E-14 score: 53.8 coord: 1057..1097 e-value: 2.9E-9 score: 36.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 781..814 e-value: 1.4E-4 score: 19.8 coord: 429..463 e-value: 3.9E-8 score: 31.0 coord: 604..638 e-value: 5.7E-10 score: 36.7 coord: 1060..1093 e-value: 6.2E-9 score: 33.5 coord: 394..427 e-value: 1.0E-9 score: 36.0 coord: 254..287 e-value: 1.1E-9 score: 35.9 coord: 359..392 e-value: 8.6E-9 score: 33.0 coord: 1025..1059 e-value: 9.5E-7 score: 26.6 coord: 921..953 e-value: 1.9E-9 score: 35.1 coord: 220..253 e-value: 5.0E-5 score: 21.2 coord: 499..533 e-value: 1.4E-11 score: 41.8 coord: 815..849 e-value: 3.9E-9 score: 34.1 coord: 850..883 e-value: 1.3E-7 score: 29.4 coord: 991..1023 e-value: 4.5E-10 score: 37.1 coord: 885..919 e-value: 2.8E-10 score: 37.7 coord: 956..988 e-value: 9.7E-8 score: 29.7 coord: 184..217 e-value: 2.6E-6 score: 25.2 coord: 289..322 e-value: 3.9E-10 score: 37.3 coord: 535..567 e-value: 1.3E-8 score: 32.4 coord: 569..603 e-value: 3.7E-11 score: 40.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 497..531 score: 13.998
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 392..426 score: 13.307
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 988..1022 score: 13.165
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 287..321 score: 13.68
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 357..391 score: 12.704
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 217..251 score: 10.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 778..812 score: 9.46
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 918..952 score: 12.902
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 252..286 score: 12.847
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 671..701 score: 6.062
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 7.333
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 813..847 score: 12.211
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..216 score: 12.057
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 602..636 score: 12.375
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 112..146 score: 6.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 567..601 score: 12.934
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1058..1092 score: 12.573
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 848..882 score: 11.016
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 637..667 score: 8.846
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 322..356 score: 9.295
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 532..566 score: 12.496
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 462..496 score: 9.865
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 883..917 score: 13.395
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 427..461 score: 11.224
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 953..987 score: 11.838
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1023..1057 score: 11.356
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 65..185 e-value: 2.0E-8 score: 35.8 coord: 333..439 e-value: 4.5E-32 score: 112.8 coord: 227..332 e-value: 1.1E-32 score: 114.9 coord: 860..967 e-value: 1.0E-33 score: 118.2 coord: 741..859 e-value: 9.5E-31 score: 108.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 631..701 e-value: 4.7E-14 score: 54.3 coord: 562..630 e-value: 7.9E-23 score: 82.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 972..1102 e-value: 3.1E-35 score: 124.2 coord: 440..561 e-value: 3.0E-34 score: 121.0
None	No IPR available	PANTHER	PTHR24015:SF612	SUBFAMILY NOT NAMED	coord: 1022..1098
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1022..1098
None	No IPR available	PANTHER	PTHR24015:SF612	SUBFAMILY NOT NAMED	coord: 43..927 coord: 922..1023
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 43..927 coord: 922..1023
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 372..457 coord: 496..642
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 891..1084
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 766..947