Carg02498-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02498-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox protein knotted-1, putative
Location	Cucurbita_argyrosperma_scaffold_009 : 263056 .. 264272 (+)
Sequence length	636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGCAAGTCAAACAAGTTATTATCATCATTCAAAATGTTTAGATATTAGTGTCTTTTTTTAAATGGAGATTCAAATTCTCTCTTTCTTGTCTGTAATCTACTATACAAGAAACTTAAAAATGCTTTGTTTAATTTAATCTCTGCTGGGTTTTTCTTTTACTGTAAAGTCTTTCATTATCCATCTTTTGCTCGTTGTAGTAGCGTGCATATTAATATCTAAAATTGTCATCTTATTCAAGAAATTGGGGTGGTTTTGAATTGTCACGCCCTCGATTTAACATGACCAATAATGTGTGGCTTTTAATGTCAATTCCAGTCTTGTGGGGGAAGAGGTTGTTAAAAATATAATGAGATCCTTTAAGCACAGTTAGTTGTAGTATGGAACCTTAATTATTGGCACCGTCAAAGTAGTTTATATCTTTTGCTTTTGTTGAACATTTGATGCATTTCCCATTACCAAACATGGAAAGATGTGCTAATTTACCAACTTTGTATGCTAATTTAACATGGTGTTTAGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGTCCCTTTTATATGGTCTTGCAAATGAAGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

mRNA sequence

ATGGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

Coding sequence (CDS)

ATGGGAGTGAGCCTTGGTGAAGGAAGCGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTAGTGATGCACACGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCAGAAAGGTCGTTGATGGAGAGGGGATGGTTTGTTTGGGATTTAGAAGAGGTCAAGAACGTGATGGTATTTTGGTTGCAGGGATTCAAGTCAAGAATTGAGGACGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGTAAGGAAAAACCAAACCCAACCATTTCATTTGGAAACAAAGAGTTTTGAAGTTGGAATCTCTACAACATCTCGTCTTTCCTTTGCGATTGCAGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCCTGAAGTCAAAGCGCAAGAGATAAGGAAATCATATGATATGTTATATTGTAGGTTTGGCAAAAGTATGGTCTGA

Protein sequence

MGVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTVRKNQTQPFHLETKSFEVGISTTSRLSFAIAGRRQGEAGGGDGVAAETNKQLVHQPKEEKLAQQLSISNIPEVKAQEIRKSYDMLYCRFGKSMV

Homology

[Close]

BLAST of Carg02498-RA vs. NCBI nr
Match: XP_022958449.1 (homeobox protein knotted-1-like 7 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 3.1e-45
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSG DAHDMMGFGPLLPTESERSLMER       
Sbjct: 149 GVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMER-----VR 208

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 209 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 256

[Close]

BLAST of Carg02498-RA vs. NCBI nr
Match: XP_023532817.1 (homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532818.1 homeobox protein knotted-1-like 7 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 3.1e-45
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDDDDDVPMEFSLDQSG DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

[Close]

BLAST of Carg02498-RA vs. NCBI nr
Match: XP_004143939.1 (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypothetical protein Csa_5G156150 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 4.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

[Close]

BLAST of Carg02498-RA vs. NCBI nr
Match: XP_008437194.1 (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 4.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 147 GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 206

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 207 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 254

[Close]

BLAST of Carg02498-RA vs. NCBI nr
Match: XP_022159793.1 (homeobox protein knotted-1-like 7 [Momordica charantia])

HSP 1 Score: 187.6 bits (475), Expect = 4.4e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 80  GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 139

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 140 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 187

[Close]

BLAST of Carg02498-RA vs. TAIR10
Match: AT1G62990.1 (KNOTTED-like homeobox of Arabidopsis thaliana 7)

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-41
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+PM+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 135 GATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 194

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 195 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 245

[Close]

BLAST of Carg02498-RA vs. TAIR10
Match: AT5G11060.1 (KNOTTED1-like homeobox gene 4)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAH------DMMGFGPLLPTESERSLMERG 61
           GVS GEG+GATMS+D+D        +Q  SDAH      D +GFGPL+PTESERSLMER 
Sbjct: 232 GVSPGEGTGATMSEDED--------EQVESDAHLFDGSLDGLGFGPLVPTESERSLMER- 291

Query: 62  WFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPY 118
                 +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK+WWQ HSKWPY
Sbjct: 292 ----VRQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPY 337

[Close]

BLAST of Carg02498-RA vs. TAIR10
Match: AT5G25220.1 (KNOTTED1-like homeobox gene 3)

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-31
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GVS GEG GATMSDD+D+ V  + ++   G    D++GFGPL+PTESERSLMER      
Sbjct: 268 GVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMER-----V 327

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 328 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373

[Close]

BLAST of Carg02498-RA vs. TAIR10
Match: AT4G32040.1 (KNOTTED1-like homeobox gene 5)

HSP 1 Score: 127.5 bits (319), Expect = 9.8e-30
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD--VPMEFSLDQSGSDAHD-MMGFGPLLPTESERSLMERGWFV 61
           GVS  E +G TMSDD+DD  V  E ++     D  D +MGFGPL+PTE ERSLMER    
Sbjct: 222 GVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMER---- 281

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K+ +    QGFK +I D+REEI+RKRRAGKLPGDTT+VLK WW+ HSKWPYPT
Sbjct: 282 -VKKELKHEL---KQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPT 332

[Close]

BLAST of Carg02498-RA vs. TAIR10
Match: AT1G23380.2 (KNOTTED1-like homeobox gene 6)

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-07
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 72  LQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           L+ F SRI  ++ E  +K++ GKLP +    L +WW  H KWPYPT
Sbjct: 232 LRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPT 277

[Close]

BLAST of Carg02498-RA vs. Swiss-Prot
Match: sp|Q9FPQ8|KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-40
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+PM+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 135 GATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 194

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 195 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 245

[Close]

BLAST of Carg02498-RA vs. Swiss-Prot
Match: sp|P46606|HD1_BRANA (Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSD---AHDMMGFGPLLPTESERSLMERGWFV 61
           G +LGEGSGATMS+D+DD+ M+FS D SG D    HDM GFGPLLPTESERSLMER    
Sbjct: 138 GATLGEGSGATMSEDEDDLQMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMER---- 197

Query: 62  WDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
              +E+K  +    QGFKSRIEDVREEI+RKRRAGKLPGDTTTVLKNWWQQH KWPYPT
Sbjct: 198 -VRQELKLEL---KQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPT 248

[Close]

BLAST of Carg02498-RA vs. Swiss-Prot
Match: sp|O04136|KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.1e-33
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDD-VPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWD 61
           GVS GEG+ ATMSDD+DD V  + +L   G + HD MGFGPL+PTESERSLMER      
Sbjct: 273 GVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMER-----V 332

Query: 62  LEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
            +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKWPYPT
Sbjct: 333 RQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 381

[Close]

BLAST of Carg02498-RA vs. Swiss-Prot
Match: sp|Q94LW3|KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS66 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-31
Identity = 75/123 (60.98%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 4   SLGEGSGATMS---------DDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMER 63
           SL + +GAT+          D+D+  PM       GSD HD+MGFGPL+PT+SERSLMER
Sbjct: 155 SLQDLTGATLEEXXXXXXXXDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMER 214

Query: 64  GWFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWP 118
                  +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTT+LK WWQQHSKWP
Sbjct: 215 -----VRQELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWP 269

[Close]

BLAST of Carg02498-RA vs. Swiss-Prot
Match: sp|P48001|KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana OX=3702 GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-30
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAH------DMMGFGPLLPTESERSLMERG 61
           GVS GEG+GATMS+D+D        +Q  SDAH      D +GFGPL+PTESERSLMER 
Sbjct: 232 GVSPGEGTGATMSEDED--------EQVESDAHLFDGSLDGLGFGPLVPTESERSLMER- 291

Query: 62  WFVWDLEEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPY 118
                 +E+K+ +    QG+K +I D+REEILRKRRAGKLPGDTT+VLK+WWQ HSKWPY
Sbjct: 292 ----VRQELKHEL---KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPY 337

[Close]

BLAST of Carg02498-RA vs. TrEMBL
Match: tr|A0A1S3ATE3|A0A1S3ATE3_CUCME (homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.9e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 147 GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 206

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 207 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 254

[Close]

BLAST of Carg02498-RA vs. TrEMBL
Match: tr|A0A0A0KKD3|A0A0A0KKD3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.9e-44
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+PM+FSLDQSG+DAHDMMGFGPLLPTESERSLMER       
Sbjct: 148 GVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMER-----VR 207

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 208 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 255

[Close]

BLAST of Carg02498-RA vs. TrEMBL
Match: tr|A0A2P2LEW3|A0A2P2LEW3_RHIMU (Homeobox protein HD1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 95/116 (81.90%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GV+LGEG+GATMSDD+DD+ MEFSLDQSGSD HDMMGFGPLLPTESERSLMER       
Sbjct: 149 GVTLGEGTGATMSDDEDDLQMEFSLDQSGSDGHDMMGFGPLLPTESERSLMER-----VR 208

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   V   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 209 QELK---VELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 256

[Close]

BLAST of Carg02498-RA vs. TrEMBL
Match: tr|M5WA76|M5WA76_PRUPE (KNOPE7 OS=Prunus persica OX=3760 GN=KNOPE7 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 94/116 (81.03%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEGSGATMSDD+DD+ M+FSLDQSG D HDMMGFGPLLPTESERSLMER       
Sbjct: 138 GVSLGEGSGATMSDDEDDMQMDFSLDQSGGDGHDMMGFGPLLPTESERSLMER-----VR 197

Query: 62  EEVKNVMVFWLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
           +E+K   +   QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 198 QELK---IELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 245

[Close]

BLAST of Carg02498-RA vs. TrEMBL
Match: tr|W9RYL6|W9RYL6_9ROSA (Homeobox protein knotted-1-like 7 OS=Morus notabilis OX=981085 GN=L484_023141 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.7e-42
Identity = 92/117 (78.63%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 2   GVSLGEGSGATMSDDDDDVPMEFSLDQSGSDAHDMMGFGPLLPTESERSLMERGWFVWDL 61
           GVSLGEG+GATMSDD+DD+ M+FS DQSG+D HDMMGFGPLLPTESERSLMER       
Sbjct: 144 GVSLGEGTGATMSDDEDDLQMDFSFDQSGADGHDMMGFGPLLPTESERSLMER------- 203

Query: 62  EEVKNVMVFWL-QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 118
             V++ +   L QGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT
Sbjct: 204 --VRHELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPT 251

The following BLAST results are available for this feature:

BLAST of Carg02498-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958449.1	3.1e-45	85.34	homeobox protein knotted-1-like 7 [Cucurbita moschata]	[more]
XP_023532817.1	3.1e-45	85.34	homeobox protein knotted-1-like 7 isoform X1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_004143939.1	4.4e-44	81.90	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus] >KGN50155.1 hypot...	[more]
XP_008437194.1	4.4e-44	81.90	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo]	[more]
XP_022159793.1	4.4e-44	81.90	homeobox protein knotted-1-like 7 [Momordica charantia]	[more]

BLAST of Carg02498-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62990.1	1.9e-41	73.11	KNOTTED-like homeobox of Arabidopsis thaliana 7	[more]
AT5G11060.1	1.8e-31	60.66	KNOTTED1-like homeobox gene 4	[more]
AT5G25220.1	3.1e-31	61.54	KNOTTED1-like homeobox gene 3	[more]
AT4G32040.1	9.8e-30	58.82	KNOTTED1-like homeobox gene 5	[more]
AT1G23380.2	9.0e-07	45.65	KNOTTED1-like homeobox gene 6	[more]

BLAST of Carg02498-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FPQ8\|KNAT7_ARATH	3.4e-40	73.11	Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana OX=3702 GN=KNAT7 PE=1 ...	[more]
sp\|P46606\|HD1_BRANA	2.9e-39	72.27	Homeobox protein HD1 OS=Brassica napus OX=3708 GN=HD1 PE=2 SV=1	[more]
sp\|O04136\|KNAP3_MALDO	4.1e-33	64.10	Homeobox protein knotted-1-like 3 OS=Malus domestica OX=3750 PE=2 SV=1	[more]
sp\|Q94LW3\|KNOS3_ORYSJ	2.2e-31	60.98	Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HO...	[more]
sp\|P48001\|KNAT4_ARATH	3.2e-30	60.66	Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana OX=3702 GN=KNAT4 PE=1 ...	[more]

BLAST of Carg02498-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATE3\|A0A1S3ATE3_CUCME	2.9e-44	81.90	homeobox protein knotted-1-like 7 OS=Cucumis melo OX=3656 GN=LOC103482695 PE=3 S...	[more]
tr\|A0A0A0KKD3\|A0A0A0KKD3_CUCSA	2.9e-44	81.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G156150 PE=3 SV=1	[more]
tr\|A0A2P2LEW3\|A0A2P2LEW3_RHIMU	4.2e-43	81.90	Homeobox protein HD1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
tr\|M5WA76\|M5WA76_PRUPE	7.2e-43	81.03	KNOPE7 OS=Prunus persica OX=3760 GN=KNOPE7 PE=2 SV=1	[more]
tr\|W9RYL6\|W9RYL6_9ROSA	2.7e-42	78.63	Homeobox protein knotted-1-like 7 OS=Morus notabilis OX=981085 GN=L484_023141 PE...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02498	Carg02498	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02498-RA	Carg02498-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02498-RA.exon.1	Carg02498-RA.exon.1	exon
Carg02498-RA.exon.2	Carg02498-RA.exon.2	exon
Carg02498-RA.exon.3	Carg02498-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02498-RA.CDS.1	Carg02498-RA.CDS.1	CDS
Carg02498-RA.CDS.2	Carg02498-RA.CDS.2	CDS
Carg02498-RA.CDS.3	Carg02498-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11850:SF74	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	coord: 2..117
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 2..117