Carg02342-RA (mRNA) Silver-seed gourd

NameCarg02342-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein translocase subunit
LocationCucurbita_argyrosperma_scaffold_007 : 1274427 .. 1276499 (+)
Sequence length842
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTGGAATTCTAAGATCCATTGTCCGACCCCTAACGAGGATCGCCACTTCCCGACCACCATGTCCGGTCACTTCCACTTCCGCGAAACTGGGGTTTCATGTCCCTTCAACTCAAGCTCCTTGGTCGTTCCAAATTGGGAACCATTTCCACAGTTTGACCGACACTCGGTTTCCGAAGAGACGGCCCAGTGATAAAGCTCCTTGTTCTTTGAATTGGATGTTTGATTCCATGAATTAATGGTTTCAAATGCTTTGTTTTCTGAATGGCAGGGCCATATGCTTGGGTTCAATATACCCCTGGTGACCCAATTCTTCCCAATCAACCGAATGAAGGGAGCATTTATTCTGGTTCGTATGTTATGATATAATCAACTTTGAAGCATTGTTTTGGTGACTTTTCTCTTCTTTACTGGCTTCATAGCTCCATAACCATTGCTGTGCTTTGCTGTTCTATTATAAACTGTCTAGTGAACTGCACATTGTGGTATGCTAGGTGGATGTCCCACGTTTTAAAGTCTTAAGGGGAAAAGCCTAAAGAGGATAATATCTGCTAGCGGTGGATTTGGGGCGTTACAAATGGTATCAGAGTCAGACACTGAATGATGTGCTAGCCTTCTCGCTGTTCCCCAAAGGGGTAGACACGAGGCGGTATGCCAGTAAAGACGCTGGCCCTAAAAGGGGTGGATTGTGATGTCCTATGTTGGTTTGGGAAGAGAACAAACCTCCTTTATAAGGGTGTGGAAACCTTCCACTAGTAGATGCGTTTTGAAGCTTTGAGGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATATGCCAATGGTGGAACTGGGGTGTTACACTAGCTGAATACATATAAATCATGACTTGAATAGGTTATTCTCACGGCTGCAAATAGGCCCGGGAGAGGTTTTCACCCATTTATAAAGAATGTTCGCTCCCCCTCTAACTAACGTGGGATCTCACAGTCCACCTCAAGGAGAGGTTTTCACACTCTTGTAAAGAATGATTCGTTTCACTCTCCAACCAATGTGGGATCTCACAATCTACCTCCTTTGAGGCTCAGCTCTACTCTCCTTGATACTATTTATAACAATCTAAACCCACAGTTAGTAGATATTGTCCTCTTTGTACTTTCCCTTCTAACCTTCTCCTTAAGGTTTTAAAACGCGCATGTTAGGGAAAGGTTTTCACATCCTTAAAACGTTTAGTTCCCTTCTCCAATCAAAGTGGGATCTCACAATTCAACACTAGCGTTTTAGAAGATATTTGGAGAAGTGGGAGGGCTTGAAAGGCTGAAATTGTGGAAGCTTGTAACGGGATTTGCTAATGTGCGTATAACTTAGTTAGTTAACGCGTATATCCTCGATTGGTGTGAAATTTGTTCATGGAATTAAACGTGTCCCCTTCCCCTTTGTTCATGGTTAAGGCGTATACTCTCAACCAATGAGTCCGATACATTTATGTACCATTACCAAAAGACTTGCTGGTTGGTATGTGCAGGCTGAAAAAAAGAAGAGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAAAACTAAGTTACGATCAAAGTTCAGACATAGACAGCAAACCTGTCCTGTCTTTTGGTAACCTAGTACACATACACAGACAGAAAAACTAGGATCAAGACATAACTCCATTATTTCTGAAACTCAGAGTTGTATTATTCTATAGTAGTCCAATAGATGGATGTTTGTGTGTGTCATGATGATGAAGGAGACTCATTGATTGGTTCTCGATGTGTCTGAGCCAGCCATGACTTGACTTAGAGTAGAGGTAAGTCGGTTAGAGTCGCAACGAGTTGGTGATGTTAGTTTCTGCATGAATTGTGTTCCGTTAACAGAGGAGAACCTCGCCTATGATTCAATGAATAGAACTTGAGTTCTTTCTTAGTCTTTTCATGAACAGGTCGAGATCATGACGACCGTGTGAAAAGGGTACTGATTGAATGCAAAATCTTAAATCAAATTTACCCCAACTACACGGCATTTGTTTTTGTATGTAAGAATCTAAGCCACCACACAGCCTACGGGTATCAGTATT

mRNA sequence

ATGGGGCTTGGAATTCTAAGATCCATTGTCCGACCCCTAACGAGGATCGCCACTTCCCGACCACCATGTCCGGTCACTTCCACTTCCGCGAAACTGGGGTTTCATGTCCCTTCAACTCAAGCTCCTTGGTCGTTCCAAATTGGGAACCATTTCCACAGTTTGACCGACACTCGGTTTCCGAAGAGACGGCCCAGGCCATATGCTTGGGTTCAATATACCCCTGGTGACCCAATTCTTCCCAATCAACCGAATGAAGGGAGCATTTATTCTGGTTCGTATGCTGAAAAAAAGAAGAGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAAAACTAAGTTACGATCAAAGTTCAGACATAGACAGCAAACCTGTCCTGTCTTTTGGTAACCTAGTACACATACACAGACAGAAAAACTAGGATCAAGACATAACTCCATTATTTCTGAAACTCAGAGTTGTATTATTCTATAGTAGTCCAATAGATGGATGTTTGTGTGTGTCATGATGATGAAGGAGACTCATTGATTGGTTCTCGATGTGTCTGAGCCAGCCATGACTTGACTTAGAGTAGAGGTAAGTCGGTTAGAGTCGCAACGAGTTGGTGATGTTAGTTTCTGCATGAATTGTGTTCCGTTAACAGAGGAGAACCTCGCCTATGATTCAATGAATAGAACTTGAGTTCTTTCTTAGTCTTTTCATGAACAGGTCGAGATCATGACGACCGTGTGAAAAGGGTACTGATTGAATGCAAAATCTTAAATCAAATTTACCCCAACTACACGGCATTTGTTTTTGTATGTAAGAATCTAAGCCACCACACAGCCTACGGGTATCAGTATT

Coding sequence (CDS)

ATGGGGCTTGGAATTCTAAGATCCATTGTCCGACCCCTAACGAGGATCGCCACTTCCCGACCACCATGTCCGGTCACTTCCACTTCCGCGAAACTGGGGTTTCATGTCCCTTCAACTCAAGCTCCTTGGTCGTTCCAAATTGGGAACCATTTCCACAGTTTGACCGACACTCGGTTTCCGAAGAGACGGCCCAGGCCATATGCTTGGGTTCAATATACCCCTGGTGACCCAATTCTTCCCAATCAACCGAATGAAGGGAGCATTTATTCTGGTTCGTATGCTGAAAAAAAGAAGAGGAAAGCTCAGCTTCAAGAGGCAAAGAAGAAGAAAAAACTAAGTTACGATCAAAGTTCAGACATAGACAGCAAACCTGTCCTGTCTTTTGGTAACCTAGTACACATACACAGACAGAAAAACTAG

Protein sequence

MGLGILRSIVRPLTRIATSRPPCPVTSTSAKLGFHVPSTQAPWSFQIGNHFHSLTDTRFPKRRPRPYAWVQYTPGDPILPNQPNEGSIYSGSYAEKKKRKAQLQEAKKKKKLSYDQSSDIDSKPVLSFGNLVHIHRQKN
BLAST of Carg02342-RA vs. NCBI nr
Match: XP_022992813.1 (uncharacterized protein LOC111489033 [Cucurbita maxima])

HSP 1 Score: 166.8 bits (421), Expect = 5.3e-38
Identity = 88/129 (68.22%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRPPCPVTSTSAKLGFHVPSTQAPWSFQIGNHFHSLTDTRFP 60
           MGL ILRSIVRPLTRIATSRPPCPVTSTSAKLGFHV ST+APW FQI  HFHSLTDTRFP
Sbjct: 1   MGLEILRSIVRPLTRIATSRPPCPVTSTSAKLGFHVSSTEAPWLFQIATHFHSLTDTRFP 60

Query: 61  KRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS------------YA 104
           KRRP               PYAWVQYTPG+PILPNQPNEGS+   +              
Sbjct: 61  KRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKRIRLRRAFILG 120

BLAST of Carg02342-RA vs. NCBI nr
Match: XP_022132599.1 (uncharacterized protein LOC111005424 [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 76/138 (55.07%), Postives = 83/138 (60.14%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPS-----TQAPWSFQIGNH 60
           MGLG+LRS+VRPLTR   SRP     P P   TS +  FH+ S     TQAPW F I NH
Sbjct: 1   MGLGMLRSVVRPLTRTLRSRPSTSLTPFPAAFTSPEPRFHLLSGGSVGTQAPW-FPIANH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 103
           FHSLTDTRFPKRRP               PYAWVQYTPG+PILPNQPNEGS+   +    
Sbjct: 61  FHSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNQPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. NCBI nr
Match: XP_008466941.1 (PREDICTED: uncharacterized protein LOC103504316 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 72/139 (51.80%), Postives = 82/139 (58.99%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPSTQA-----PWSFQIGNH 60
           MGLGILRSIVRPLTRI+ S P       P   T +K GFH+PST +     PW F I NH
Sbjct: 1   MGLGILRSIVRPLTRISRSHPFSSPTAFPSAFTFSKPGFHLPSTGSVRTGDPW-FPITNH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 104
           FHSLTDTRFPKRRP               PYAWV YTPG PILPN PNEGS+   +    
Sbjct: 61  FHSLTDTRFPKRRPSYKPRRRRASLKPPGPYAWVPYTPGQPILPNHPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. NCBI nr
Match: XP_004142815.1 (PREDICTED: uncharacterized protein LOC101208398 [Cucumis sativus] >KGN51446.1 hypothetical protein Csa_5G548120 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 71/139 (51.08%), Postives = 82/139 (58.99%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPSTQA-----PWSFQIGNH 60
           MGLGILRSI+RPLTRI+ S P       P   T +K GFH+PST +     PW F I NH
Sbjct: 1   MGLGILRSIIRPLTRISRSHPFSSPTAFPSAFTFSKPGFHLPSTGSVRTGDPW-FPIANH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 104
           FHSLT+TR PKRRP               PYAWV YTPG PILPNQPNEGS+   +    
Sbjct: 61  FHSLTETRLPKRRPSYKPRRKRASLRPPGPYAWVPYTPGQPILPNQPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. NCBI nr
Match: XP_022963246.1 (uncharacterized protein LOC111463516 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 72/139 (51.80%), Postives = 82/139 (58.99%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPS-----TQAPWSFQIGNH 60
           MGLGILRS +RPLTR   SRP     P P    S K GF++ S     T+APW F I NH
Sbjct: 1   MGLGILRSALRPLTRTLGSRPFTSLTPSPSAFISPKSGFNLRSLGAVGTKAPW-FPISNH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 104
           F+SLTDTRFPKRRP               PYAWV+YTPG+PI PNQPNEGS+   +    
Sbjct: 61  FNSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVKYTPGEPIQPNQPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. TAIR10
Match: AT3G51010.1 (unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-15
Identity = 57/142 (40.14%), Postives = 69/142 (48.59%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSR-------PPCPVTSTSAK------LGFHVPSTQAPWSFQI 60
           MG G +RSI+RPL+R   SR        P   T  +AK       G  +   + PW   +
Sbjct: 1   MGFGAIRSILRPLSRTLVSRAVVNYSSAPFNATIPAAKPELCSFFGGSMTHLRLPW-IPM 60

Query: 61  GNHFH--SLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSG 102
            NHFH  SLTDTR PKRRP               PYA+VQYTPG PI  N PNEGS+   
Sbjct: 61  ANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRR 120

BLAST of Carg02342-RA vs. TrEMBL
Match: tr|A0A1S3CSD0|A0A1S3CSD0_CUCME (uncharacterized protein LOC103504316 OS=Cucumis melo OX=3656 GN=LOC103504316 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 72/139 (51.80%), Postives = 82/139 (58.99%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPSTQA-----PWSFQIGNH 60
           MGLGILRSIVRPLTRI+ S P       P   T +K GFH+PST +     PW F I NH
Sbjct: 1   MGLGILRSIVRPLTRISRSHPFSSPTAFPSAFTFSKPGFHLPSTGSVRTGDPW-FPITNH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 104
           FHSLTDTRFPKRRP               PYAWV YTPG PILPN PNEGS+   +    
Sbjct: 61  FHSLTDTRFPKRRPSYKPRRRRASLKPPGPYAWVPYTPGQPILPNHPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. TrEMBL
Match: tr|A0A0A0KUQ0|A0A0A0KUQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G548120 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 71/139 (51.08%), Postives = 82/139 (58.99%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRP-----PCPVTSTSAKLGFHVPSTQA-----PWSFQIGNH 60
           MGLGILRSI+RPLTRI+ S P       P   T +K GFH+PST +     PW F I NH
Sbjct: 1   MGLGILRSIIRPLTRISRSHPFSSPTAFPSAFTFSKPGFHLPSTGSVRTGDPW-FPIANH 60

Query: 61  FHSLTDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS---- 104
           FHSLT+TR PKRRP               PYAWV YTPG PILPNQPNEGS+   +    
Sbjct: 61  FHSLTETRLPKRRPSYKPRRKRASLRPPGPYAWVPYTPGQPILPNQPNEGSVKRRNEKKR 120

BLAST of Carg02342-RA vs. TrEMBL
Match: tr|A0A2P4MTD8|A0A2P4MTD8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_70382 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 67/141 (47.52%), Postives = 77/141 (54.61%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSR---------PPCPVTSTSAKLGFHVP---STQAPWSFQIG 60
           MG G LR+++RPL+R   SR          P P TST + L   +      QAPW F I 
Sbjct: 1   MGFGALRTLIRPLSRTLISRTYTSICSTTTPFPATSTFSPLNSELRFAFGGQAPW-FPIH 60

Query: 61  NHFHSLTDTRFPKRR--------------PRPYAWVQYTPGDPILPNQPNEGSIYSGS-- 104
           NHFHSL DTRFPKRR              P PYAWV+YTPG+PILPN PNEGS+   +  
Sbjct: 61  NHFHSLNDTRFPKRRPGQKSRRKRATMKTPGPYAWVKYTPGEPILPNNPNEGSVKRRNEK 120

BLAST of Carg02342-RA vs. TrEMBL
Match: tr|A0A067E8W4|A0A067E8W4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030229mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.4e-20
Identity = 66/138 (47.83%), Postives = 77/138 (55.80%), Query Frame = 0

Query: 1   MGLGILRSIVRPLTRIATSRPPCPVTSTS--------AKLGFHVPST-QAPWSFQIGNHF 60
           MG G+LRSI+RPL+R   SR P   +ST+         K  F + ST Q+PW   I NHF
Sbjct: 1   MGFGVLRSIIRPLSRTLISRSPTSTSSTTPFFSSSSLLKPYFQLLSTRQSPW-IPISNHF 60

Query: 61  HSLTDTRFPKRR--------------PRPYAWVQYTPGDPILPNQPNEGSIYSGS----- 104
           HSLTDTRFPKRR              P PYAWVQYTPG PI PN PN+GS+   +     
Sbjct: 61  HSLTDTRFPKRRPVEKPRRKRASLRPPGPYAWVQYTPGQPISPNNPNQGSVKRRNEKKRM 120

BLAST of Carg02342-RA vs. TrEMBL
Match: tr|A0A1S3VBS0|A0A1S3VBS0_VIGRR (uncharacterized protein LOC106773601 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773601 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 63/135 (46.67%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 1   MGL-GILRSIVRPLTRIATSRPPCPVTSTSAKLGFHVPSTQAP-----WSFQIGNHFHSL 60
           MG+ G+LR+IVRPL+ +A+SR      ST+A +    P + +P     W+  + NHFHSL
Sbjct: 1   MGIAGVLRNIVRPLS-LASSRTLTSRMSTNASMALFCPVSPSPCKPPLWTLPLLNHFHSL 60

Query: 61  TDTRFPKRRPR--------------PYAWVQYTPGDPILPNQPNEGSIYSGS-------- 104
           TDTRFPKRRP               PYAWVQYTPG+PILPN+PNEGS+   +        
Sbjct: 61  TDTRFPKRRPSDKPRRKRASLRPSGPYAWVQYTPGEPILPNKPNEGSVKRRNEKKRMRQR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022992813.15.3e-3868.22uncharacterized protein LOC111489033 [Cucurbita maxima][more]
XP_022132599.11.4e-2555.07uncharacterized protein LOC111005424 [Momordica charantia][more]
XP_008466941.11.7e-2351.80PREDICTED: uncharacterized protein LOC103504316 [Cucumis melo][more]
XP_004142815.12.2e-2351.08PREDICTED: uncharacterized protein LOC101208398 [Cucumis sativus] >KGN51446.1 hy... [more]
XP_022963246.11.1e-2251.80uncharacterized protein LOC111463516 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G51010.14.5e-1540.14unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CSD0|A0A1S3CSD0_CUCME1.1e-2351.80uncharacterized protein LOC103504316 OS=Cucumis melo OX=3656 GN=LOC103504316 PE=... [more]
tr|A0A0A0KUQ0|A0A0A0KUQ0_CUCSA1.4e-2351.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G548120 PE=4 SV=1[more]
tr|A0A2P4MTD8|A0A2P4MTD8_QUESU4.3e-2047.52Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_70382 PE=4 SV=1[more]
tr|A0A067E8W4|A0A067E8W4_CITSI7.4e-2047.83Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030229mg PE=4 SV=1[more]
tr|A0A1S3VBS0|A0A1S3VBS0_VIGRR1.3e-1946.67uncharacterized protein LOC106773601 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg02342Carg02342gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg02342-RACarg02342-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02342-RA.exon.1Carg02342-RA.exon.1exon
Carg02342-RA.exon.2Carg02342-RA.exon.2exon
Carg02342-RA.exon.3Carg02342-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02342-RA.CDS.1Carg02342-RA.CDS.1CDS
Carg02342-RA.CDS.2Carg02342-RA.CDS.2CDS
Carg02342-RA.CDS.3Carg02342-RA.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02342-RA.three_prime_UTR.1Carg02342-RA.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..117
NoneNo IPR availablePANTHERPTHR36767FAMILY NOT NAMEDcoord: 1..112