Carg01845-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01845-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L15, putative
Location	Cucurbita_argyrosperma_scaffold_003 : 724891 .. 726662 (-)
Sequence length	1047

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGAACAGAACCACAATTGTAAATACCGACTCCCAGTTTATCCATGGCTGCTCTTCTTTCCTTATCTTCAAGTTCCCTGACCAGAACAGCCATTGCTCTGCCTCATCCAACCACTCCCTTCAAGGTAATTTAAATTCCAGACGTTATCTCATTTCAATTTTCTTGCACGTCGATTCTTTTATCATTTACGGAACTCTGATTCACATACATTTCCAGGGAAATGTGAAGATTCTGAATTCAAAGCAGTTCAGCTTTTCTCCACTCAAGCTCAAATTCAAGGTGGGAGATGGAAAACCATTGGTTGTTCGCAGCCAGGCCGCTGCGTCTTCCTTGTCTGCCTCCCCCGTCGAGAGTGTGCGGTTCCGTCTGGACAATCTTGGACCACAGCAAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGTGGTAGCTGTGGATTTGGAATGAGAGGACAGAAATCAAGGTCTGGGCCTGGTGTAAGAAAAGGATTCGAAGGTGGACAGATGCCTCTTTATCGGAGAATTCCCAAACTTAGAGGAATTGCAGGAGGTAATTTCTATCATTCTGCTACTTCCCTTTTGTATTTGAATTATACAACTCTAGTATCTGGCTGGTAGGCGTCCGCAATGGCTAATTTCGGCTAGTAGTTGTGGTTGCTTCATTGAGGGAGAGTTCTAATTATCCTTTCTATCTTATCTTGAATACTTCCATTCATTGCTCACACTCTTTACCCCTTAATTTCTTTTAACCTTCTTAGTACACGGTGGTTGTTGGAGAAATTGCGATTGCTAATAGTTGTTTGTATTGATTGTACTCGTATTTGTGTAGTTCCTTATTCCTTGATCTAGCACATTCGGCCTTGTTAGATTTTAGGAGACTAGGACAATGGAGAAAAGCAGTCACTCTATAATCTGATGTCCTTCTCCTGGTTCTTTTCAAGATGATATAGTTCGTATTACATTCGTATGAACTTATGATATTGAAGCCGAACAATTTCTTTTCCTTTGCAAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGCGGCAGGATTTCAGGAAGGGGAAGAGGTCTCTTTGGAAAGTTTGAAGGAGAAGGGTTTGATCAACCCATCAGGAAGAGAAAGGAAACTCCCATTGAAGGTACTAATGTCACGAGTATCTTCATTGTGAAGATTACATATCAAAATTGACATGCTGCTCTTTCCTGCTCCAAGAAGTGAAACCAAAACTGAATGATTTAAACAGATGTTTCTTAACTCATCAAGATTTTGGTATCTGATTCTTACTGTCTTAACTTCGTCTTTCCTTCAGATTTTAGCTGATGGAGAGCTAAGTGTGAAGCTAAATATCAAAGCTCGGGCGTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCCGTTGGCTGTTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGGGCTGATGAATACTTCGCGAAGAAAAGGGCTGCAGCAGCTGCTGCAGAACAAGCTGACTGATTCCAAAATTGCGGTTGGTGACAAATTCCAGGTTAAATCTCCTCCCCAGTAATTTTGGGCCTTAGAGCTAATTTGTGGGCATTAAGTCCAATTTCACATAGTTGTCTGATTGTATTGATGATTGATTTTCAAGTGCAAAATTTTCTCTCTGAAGATGTTGACGCTCTCTTTTACTTATATTAAATTACCATAACAATT

mRNA sequence

AGGGGAACAGAACCACAATTGTAAATACCGACTCCCAGTTTATCCATGGCTGCTCTTCTTTCCTTATCTTCAAGTTCCCTGACCAGAACAGCCATTGCTCTGCCTCATCCAACCACTCCCTTCAAGGGAAATGTGAAGATTCTGAATTCAAAGCAGTTCAGCTTTTCTCCACTCAAGCTCAAATTCAAGGTGGGAGATGGAAAACCATTGGTTGTTCGCAGCCAGGCCGCTGCGTCTTCCTTGTCTGCCTCCCCCGTCGAGAGTGTGCGGTTCCGTCTGGACAATCTTGGACCACAGCAAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGTGGTAGCTGTGGATTTGGAATGAGAGGACAGAAATCAAGGTCTGGGCCTGGTGTAAGAAAAGGATTCGAAGGTGGACAGATGCCTCTTTATCGGAGAATTCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGCGGCAGGATTTCAGGAAGGGGAAGAGGTCTCTTTGGAAAGTTTGAAGGAGAAGGGTTTGATCAACCCATCAGGAAGAGAAAGGAAACTCCCATTGAAGATTTTAGCTGATGGAGAGCTAAGTGTGAAGCTAAATATCAAAGCTCGGGCGTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCCGTTGGCTGTTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGGGCTGATGAATACTTCGCGAAGAAAAGGGCTGCAGCAGCTGCTGCAGAACAAGCTGACTGATTCCAAAATTGCGGTTGGTGACAAATTCCAGGTTAAATCTCCTCCCCAGTAATTTTGGGCCTTAGAGCTAATTTGTGGGCATTAAGTCCAATTTCACATAGTTGTCTGATTGTATTGATGATTGATTTTCAAGTGCAAAATTTTCTCTCTGAAGATGTTGACGCTCTCTTTTACTTATATTAAATTACCATAACAATT

Coding sequence (CDS)

ATGGCTGCTCTTCTTTCCTTATCTTCAAGTTCCCTGACCAGAACAGCCATTGCTCTGCCTCATCCAACCACTCCCTTCAAGGGAAATGTGAAGATTCTGAATTCAAAGCAGTTCAGCTTTTCTCCACTCAAGCTCAAATTCAAGGTGGGAGATGGAAAACCATTGGTTGTTCGCAGCCAGGCCGCTGCGTCTTCCTTGTCTGCCTCCCCCGTCGAGAGTGTGCGGTTCCGTCTGGACAATCTTGGACCACAGCAAGGTTCGAGGAAGAAGGGCAAGAGAAAGGGGAGAGGTATATCGGCGGGACAGGGTGGTAGCTGTGGATTTGGAATGAGAGGACAGAAATCAAGGTCTGGGCCTGGTGTAAGAAAAGGATTCGAAGGTGGACAGATGCCTCTTTATCGGAGAATTCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGGTTACCTAAATATGTGCCAGTGAATCTGAAAGACATTGAAGCGGCAGGATTTCAGGAAGGGGAAGAGGTCTCTTTGGAAAGTTTGAAGGAGAAGGGTTTGATCAACCCATCAGGAAGAGAAAGGAAACTCCCATTGAAGATTTTAGCTGATGGAGAGCTAAGTGTGAAGCTAAATATCAAAGCTCGGGCGTTTTCATCAGCAGCAAAAGAGAAGCTTGAAGCCGTTGGCTGTTCCCTTACTGTATTACCTGGACGAAAGAAGTGGGTTAAGCCATCAGTGGCTAAGAACCTCGCACGGGCTGATGAATACTTCGCGAAGAAAAGGGCTGCAGCAGCTGCTGCAGAACAAGCTGACTGA

Protein sequence

MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAAAAAAEQAD

Homology

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BLAST of Carg01845-RA vs. NCBI nr
Match: XP_022956924.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 500.7 bits (1288), Expect = 3.0e-138
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEYFAKKRAAAAAAEQAD 268
           SVAKNLARADEYFAKKRAAAAAAEQAD
Sbjct: 241 SVAKNLARADEYFAKKRAAAAAAEQAD 267

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BLAST of Carg01845-RA vs. NCBI nr
Match: XP_022984826.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 494.6 bits (1272), Expect = 2.1e-136
Identity = 265/267 (99.25%), Postives = 265/267 (99.25%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAALLSLSSSSLTRTAIALPHPTT FKGNVKILNSKQFSFS LKLKFKVGDGKPLVVRSQ
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTSFKGNVKILNSKQFSFSSLKLKFKVGDGKPLVVRSQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEYFAKKRAAAAAAEQAD 268
           SVAKNLARADEYFAKKRAAAAAAEQAD
Sbjct: 241 SVAKNLARADEYFAKKRAAAAAAEQAD 267

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BLAST of Carg01845-RA vs. NCBI nr
Match: XP_023521047.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477.2 bits (1227), Expect = 3.5e-131
Identity = 252/255 (98.82%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAALLSLSSSSLTRTAIALPHPTT FKGNVK+LNSKQFSFS LKLKFKVGDGKPLVVRSQ
Sbjct: 1   MAALLSLSSSSLTRTAIALPHPTTSFKGNVKVLNSKQFSFSSLKLKFKVGDGKPLVVRSQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEYFAK 256
           SVAKNLARADEYFAK
Sbjct: 241 SVAKNLARADEYFAK 255

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BLAST of Carg01845-RA vs. NCBI nr
Match: XP_004135093.1 (PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis sativus] >KGN52087.1 hypothetical protein Csa_5G609730 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 4.9e-117
Identity = 229/252 (90.87%), Postives = 235/252 (93.25%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAAL SLSS SLTRTA ALP+PTT FKGNV ILNSK  S S L+LK K  DGK LVVR+Q
Sbjct: 1   MAALFSLSSPSLTRTATALPYPTTSFKGNVNILNSKHLSISSLRLKSKSVDGKHLVVRNQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSLSASP E+VRFRLDNLGPQ GSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLSASPAENVRFRLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE AGFQEGEEVSLESLKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEEAGFQEGEEVSLESLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEA GCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEY 253
           SVAKNLARA+EY
Sbjct: 241 SVAKNLARAEEY 252

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BLAST of Carg01845-RA vs. NCBI nr
Match: XP_022968128.1 (50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima] >XP_022968129.1 50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima] >XP_022968130.1 50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 426.8 bits (1096), Expect = 5.5e-116
Identity = 229/266 (86.09%), Postives = 240/266 (90.23%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAA LSLSS SLTRTA  LPH TT FKGNV++LNS  F+    +LKF V DGK LVVRSQ
Sbjct: 1   MAAFLSLSSISLTRTATVLPHSTTSFKGNVRLLNSNPFNICSSRLKFTVADGKRLVVRSQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAA+SLSAS  ESVRFRLDNLGPQ GSRKK KRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAAASLSASSGESVRFRLDNLGPQSGSRKKAKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VR+GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGE+V+LE+LKEK
Sbjct: 121 VRRGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEQVTLETLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEA GC+LTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAAGCTLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEYFAKKRAAAAAAEQA 267
           SVAKNLARA+EYFAKK      AEQA
Sbjct: 241 SVAKNLARAEEYFAKKXXXXXXAEQA 266

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BLAST of Carg01845-RA vs. TAIR10
Match: AT3G25920.1 (ribosomal protein L15)

HSP 1 Score: 335.1 bits (858), Expect = 3.9e-92
Identity = 191/274 (69.71%), Postives = 215/274 (78.47%), Query Frame = 0


Query: 1   MAALLSLSSSSLT-RTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGD------GK 60
           MA  LS+SS+ LT R    L   +T FKGNV +L +       LKL   +         +
Sbjct: 1   MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFAR 60

Query: 61  PLVVRSQAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQ 120
           PLVV SQ AA+  S++ V   RFRLDNLGPQ GSRKK KRKGRGISAGQG SCGFGMRGQ
Sbjct: 61  PLVVVSQTAAT--SSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQ 120

Query: 121 KSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVS 180
           KSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGFQEG+EVS
Sbjct: 121 KSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVS 180

Query: 181 LESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPG 240
           LE+LK+KGLINPSGRERKLPLKIL  GELS+KL  KARAFS+ AKEKLEA GC+LTVLPG
Sbjct: 181 LETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPG 240

Query: 241 RKKWVKPSVAKNLARADEYFAKKRAAAAAAEQAD 268
           RKKWVKPSVAKN ARADEYFAKKRAAAA A  ++
Sbjct: 241 RKKWVKPSVAKNQARADEYFAKKRAAAAEAATSE 272

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BLAST of Carg01845-RA vs. TAIR10
Match: AT5G64670.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-07
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 0


Query: 53  KPLVVRSQAAASSLSASPVESVR-FRLDNLGPQQGS--RKKGKRKGRGISAGQGGSCGFG 112
           +P  + +Q   S+  A   + +R + L +L   + +  RK   RKGRGI      + G G
Sbjct: 37  RPSPISTQIPTSTSRALSFQGIRAYSLLSLNDLRDNVPRKLKTRKGRGIGXXXXXTAGRG 96

Query: 113 MRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL----KDIEAAG 172
            +GQK+R    ++ GFEGGQ PL RR+PK RG           + PV L    K I A  
Sbjct: 97  HKGQKARG--TMKFGFEGGQTPLRRRLPK-RGFKNKFKL---HFQPVGLGKIAKLINAGK 156

Query: 173 FQEGEEVSLESLKEKGLINPSGRERKLPLKILADGELSVK--LNIKARAFSSAAKEKLEA 229
               E +++++LK+ G I   G++ +  ++++  G   +K  L+ +    +  AKE +EA
Sbjct: 157 IDSHELITMKTLKDVGAI---GKQIEDGVRLMGRGADDIKWPLHFEVSRVTVRAKEVVEA 212

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BLAST of Carg01845-RA vs. Swiss-Prot
Match: sp|P22798|RK15_SPIOL (50S ribosomal protein L15, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL15 PE=1 SV=3)

HSP 1 Score: 340.5 bits (872), Expect = 1.7e-92
Identity = 188/271 (69.37%), Postives = 221/271 (81.55%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFK---VGDGKPLVV 60
           MA+LLSLSS+    TA +  +P++ FKGN+       F+F+PLKL  +     +   LVV
Sbjct: 1   MASLLSLSSTP-PSTANSNNYPSSTFKGNINNFRINPFNFAPLKLHLRNIVKKESTRLVV 60

Query: 61  RSQAAASSLSAS--PVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKS 120
            + A++S++S S       RFRLDNLGPQ GSRKKGKRKGRG +AGQGGSCGFGMRGQKS
Sbjct: 61  VASASSSNVSPSIGSGSETRFRLDNLGPQPGSRKKGKRKGRGHAAGQGGSCGFGMRGQKS 120

Query: 121 RSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLE 180
           RSGPG+ +GFEGGQMPLYRRIPKLRGIAGGM AGLPKYVP+NL+DIE AGF+EGEEVSLE
Sbjct: 121 RSGPGIMRGFEGGQMPLYRRIPKLRGIAGGMRAGLPKYVPINLRDIEVAGFKEGEEVSLE 180

Query: 181 SLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRK 240
           SLK KG+INPSGRER+LPLKIL +GELS KL IKARAFS +AKEKLEA GCS+TVLPGRK
Sbjct: 181 SLKAKGIINPSGRERRLPLKILGEGELSTKLQIKARAFSGSAKEKLEAAGCSVTVLPGRK 240

Query: 241 KWVKPSVAKNLARADEYFAKKRAAAAAAEQA 267
           K++K SV KNLARADEYFAKKRAA+A+  ++
Sbjct: 241 KYIKESVRKNLARADEYFAKKRAASASEAES 270

[Close]

BLAST of Carg01845-RA vs. Swiss-Prot
Match: sp|P25873|RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL15 PE=1 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 7.1e-91
Identity = 191/274 (69.71%), Postives = 215/274 (78.47%), Query Frame = 0


Query: 1   MAALLSLSSSSLT-RTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGD------GK 60
           MA  LS+SS+ LT R    L   +T FKGNV +L +       LKL   +         +
Sbjct: 1   MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFAR 60

Query: 61  PLVVRSQAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQ 120
           PLVV SQ AA+  S++ V   RFRLDNLGPQ GSRKK KRKGRGISAGQG SCGFGMRGQ
Sbjct: 61  PLVVVSQTAAT--SSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQ 120

Query: 121 KSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVS 180
           KSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGFQEG+EVS
Sbjct: 121 KSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVS 180

Query: 181 LESLKEKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPG 240
           LE+LK+KGLINPSGRERKLPLKIL  GELS+KL  KARAFS+ AKEKLEA GC+LTVLPG
Sbjct: 181 LETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPG 240

Query: 241 RKKWVKPSVAKNLARADEYFAKKRAAAAAAEQAD 268
           RKKWVKPSVAKN ARADEYFAKKRAAAA A  ++
Sbjct: 241 RKKWVKPSVAKNQARADEYFAKKRAAAAEAATSE 272

[Close]

BLAST of Carg01845-RA vs. Swiss-Prot
Match: sp|P31165|RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL15 PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.6e-88
Identity = 185/263 (70.34%), Postives = 211/263 (80.23%), Query Frame = 0


Query: 7   LSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKL---KFKVGDGKPLVVRSQAAA 66
           +S++SL   + +LP   +PFKGNVK L +K      LK+   K +V      VV   A+A
Sbjct: 1   MSAASLIPVS-SLPSLASPFKGNVKTLVAKPCLCPCLKIQRTKLRVS-----VVNKAASA 60

Query: 67  SSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRK 126
            ++ +S  E+VRFRLDNLGPQ GSRK+ KRKGRGI+AGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 61  YNVKSSG-ENVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 120

Query: 127 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEKGLI 186
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGFQ+GEEVSLE+LK K +I
Sbjct: 121 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 180

Query: 187 NPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKPSVA 246
           NPSGRERKLPLKILADGELS KL IKA AFS++AKEKLE  GCSL VLPGRKKWVKPSVA
Sbjct: 181 NPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVA 240

Query: 247 KNLARADEYFAKKRAAAAAAEQA 267
           KNLARA+EYFAKKR    A+E A
Sbjct: 241 KNLARAEEYFAKKRGGETASEPA 256

[Close]

BLAST of Carg01845-RA vs. Swiss-Prot
Match: sp|P31160|RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=rplO PE=3 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 83/158 (52.53%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 77  RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 136
           +LDNL PQ G++K+ +R GRGI+AGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+
Sbjct: 2   KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRV 61

Query: 137 PKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFQEGEEVSLESLKEKGLINPSGRERKLP 196
           PKL+      H  L     Y  VN+  +  AG   G EV+LESL   G++     +   P
Sbjct: 62  PKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGP 121

Query: 197 LKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVL 232
           LKIL DGELSV L++ A AF++ A++K+EA G S+ ++
Sbjct: 122 LKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147

[Close]

BLAST of Carg01845-RA vs. Swiss-Prot
Match: sp|Q5N0U8|RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rplO PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 83/158 (52.53%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 77  RLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 136
           +LDNL PQ G++K+ +R GRGI+AGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+
Sbjct: 2   KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRV 61

Query: 137 PKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFQEGEEVSLESLKEKGLINPSGRERKLP 196
           PKL+      H  L     Y  VN+  +  AG   G EV+LESL   G++     +   P
Sbjct: 62  PKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGP 121

Query: 197 LKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVL 232
           LKIL DGELSV L++ A AF++ A++K+EA G S+ ++
Sbjct: 122 LKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147

[Close]

BLAST of Carg01845-RA vs. TrEMBL
Match: tr|A0A0A0KUI5|A0A0A0KUI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609730 PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 3.3e-117
Identity = 229/252 (90.87%), Postives = 235/252 (93.25%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAAL SLSS SLTRTA ALP+PTT FKGNV ILNSK  S S L+LK K  DGK LVVR+Q
Sbjct: 1   MAALFSLSSPSLTRTATALPYPTTSFKGNVNILNSKHLSISSLRLKSKSVDGKHLVVRNQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSLSASP E+VRFRLDNLGPQ GSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLSASPAENVRFRLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE AGFQEGEEVSLESLKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEEAGFQEGEEVSLESLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEA GCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARADEY 253
           SVAKNLARA+EY
Sbjct: 241 SVAKNLARAEEY 252

[Close]

BLAST of Carg01845-RA vs. TrEMBL
Match: tr|A0A1S3BFG1|A0A1S3BFG1_CUCME (50S ribosomal protein L15, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489288 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 2.3e-115
Identity = 225/250 (90.00%), Postives = 233/250 (93.20%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKPLVVRSQ 60
           MAAL SLSS+SLTRTA ALP+PTT FKGNV ILNSK  S S  KLKFK  DGK LVVR+Q
Sbjct: 1   MAALFSLSSTSLTRTATALPYPTTSFKGNVSILNSKHLSISSPKLKFKAVDGKHLVVRNQ 60

Query: 61  AAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120
           AAASSL ASP ++VRFRLDNLGPQ GSRK+GKRKGRGISAGQGGSCGFGMRGQKSRSGPG
Sbjct: 61  AAASSLYASPADNVRFRLDNLGPQPGSRKRGKRKGRGISAGQGGSCGFGMRGQKSRSGPG 120

Query: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKEK 180
           VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE AGFQEGEEVSLE+LKEK
Sbjct: 121 VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEEAGFQEGEEVSLETLKEK 180

Query: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVKP 240
           GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEA GCSLTVLPGRKKWVKP
Sbjct: 181 GLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAAGCSLTVLPGRKKWVKP 240

Query: 241 SVAKNLARAD 251
           SVAKNLARA+
Sbjct: 241 SVAKNLARAE 250

[Close]

BLAST of Carg01845-RA vs. TrEMBL
Match: tr|A0A2C9UKG6|A0A2C9UKG6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102900 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 9.2e-104
Identity = 206/265 (77.74%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKV-GDGKPLVVRS 60
           MAA+L LS +   +    L HP++PFKGN+  L  +  +F PLKL FK   +G+P +V +
Sbjct: 1   MAAILPLSLNPSLKPKPYLHHPSSPFKGNLANLKFRACNFIPLKLNFKTNSNGRPSLVVT 60

Query: 61  QAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGP 120
             AAS+  ASP  +VRFRLDNLGPQ GSRK+GKRKGRGISAGQG SCGFGMRGQKSRSGP
Sbjct: 61  NQAASAAVASPASNVRFRLDNLGPQPGSRKRGKRKGRGISAGQGNSCGFGMRGQKSRSGP 120

Query: 121 GVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKE 180
           GVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLE+LKE
Sbjct: 121 GVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLETLKE 180

Query: 181 KGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVK 240
           KGLINPSGRERKLPLKIL DGELSVKL  KARA+S +AKEKLEA GC+LTVLPGRKKWVK
Sbjct: 181 KGLINPSGRERKLPLKILGDGELSVKLKFKARAYSESAKEKLEAAGCALTVLPGRKKWVK 240

Query: 241 PSVAKNLARADEYFAKKRAAAAAAE 265
           PSVAKNLARA+EYFAKK+AAAA +E
Sbjct: 241 PSVAKNLARAEEYFAKKKAAAATSE 265

[Close]

BLAST of Carg01845-RA vs. TrEMBL
Match: tr|A0A067JZV6|A0A067JZV6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18333 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.5e-101
Identity = 206/262 (78.63%), Postives = 228/262 (87.02%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKV-GDGKP-LVVR 60
           MAA+LSLSSSSL +T  +  H ++ FKGN+  L  K  +F+PLKL       G+P LVV 
Sbjct: 1   MAAILSLSSSSLLKTTPSHHHLSSSFKGNLATLKLKTCNFTPLKLHSNTKPKGRPQLVVV 60

Query: 61  SQAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSG 120
           +QA AS   ASP+ + RFRLDNLGPQ GSRK+GKRKGRGISAGQG SCGFGM+GQKSRSG
Sbjct: 61  NQATAS--VASPISNARFRLDNLGPQPGSRKRGKRKGRGISAGQGNSCGFGMKGQKSRSG 120

Query: 121 PGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLK 180
           PGVRKGFEGGQ PLYRR+PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLE+LK
Sbjct: 121 PGVRKGFEGGQTPLYRRVPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLETLK 180

Query: 181 EKGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWV 240
           E+GLINPSGRER+LPLKIL DGELSVKLN KARAFS++AKEKLEA GCSLTVLPGRKKWV
Sbjct: 181 ERGLINPSGRERRLPLKILGDGELSVKLNFKARAFSTSAKEKLEAAGCSLTVLPGRKKWV 240

Query: 241 KPSVAKNLARADEYFAKKRAAA 261
           KPSVAKNLARA+EYFAKK+AAA
Sbjct: 241 KPSVAKNLARAEEYFAKKKAAA 260

[Close]

BLAST of Carg01845-RA vs. TrEMBL
Match: tr|D7T943|D7T943_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g03590 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 6.2e-100
Identity = 204/264 (77.27%), Postives = 227/264 (85.98%), Query Frame = 0


Query: 1   MAALLSLSSSSLTRTAIALPHPTTPFKGNVKILNSKQFSFSPLKLKFKVGDGKP-LVVRS 60
           MAALLS+SS+  +RT + L HP++PFKGNV+ L +    F  +KL+ K    K  +VV S
Sbjct: 1   MAALLSVSSAPSSRTPLFLHHPSSPFKGNVRNLKANPCQFLTIKLEVKEKVRKSGVVVAS 60

Query: 61  QAAASSLSASPVESVRFRLDNLGPQQGSRKKGKRKGRGISAGQGGSCGFGMRGQKSRSGP 120
           Q + SS+    V++VRFRLDNLGPQ GSRKK KRKGRGISAGQG SCGFGMRGQKSRSGP
Sbjct: 61  QGSPSSV----VDNVRFRLDNLGPQPGSRKKAKRKGRGISAGQGNSCGFGMRGQKSRSGP 120

Query: 121 GVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLESLKE 180
           GV KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSL+SLK+
Sbjct: 121 GVMKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLDSLKK 180

Query: 181 KGLINPSGRERKLPLKILADGELSVKLNIKARAFSSAAKEKLEAVGCSLTVLPGRKKWVK 240
           KGLINPSGRER+LPLKIL  G+LSVKLNIKARAFSS+AKEKLEA GCS+TVLPGRKKW+K
Sbjct: 181 KGLINPSGRERRLPLKILGAGDLSVKLNIKARAFSSSAKEKLEAAGCSITVLPGRKKWLK 240

Query: 241 PSVAKNLARADEYFAKKRAAAAAA 264
           PSV KNLARA+EYFAKKRAAA  A
Sbjct: 241 PSVIKNLARAEEYFAKKRAAAEQA 260

The following BLAST results are available for this feature:

BLAST of Carg01845-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956924.1	3.0e-138	100.00	50S ribosomal protein L15, chloroplastic-like [Cucurbita moschata]	[more]
XP_022984826.1	2.1e-136	99.25	50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima]	[more]
XP_023521047.1	3.5e-131	98.82	50S ribosomal protein L15, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_004135093.1	4.9e-117	90.87	PREDICTED: 50S ribosomal protein L15, chloroplastic [Cucumis sativus] >KGN52087....	[more]
XP_022968128.1	5.5e-116	86.09	50S ribosomal protein L15, chloroplastic-like [Cucurbita maxima] >XP_022968129.1...	[more]

BLAST of Carg01845-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25920.1	3.9e-92	69.71	ribosomal protein L15	[more]
AT5G64670.1	6.6e-07	30.81	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Carg01845-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P22798\|RK15_SPIOL	1.7e-92	69.37	50S ribosomal protein L15, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL15 P...	[more]
sp\|P25873\|RK15_ARATH	7.1e-91	69.71	50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|P31165\|RK15_PEA	9.6e-88	70.34	50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
sp\|P31160\|RL15_SYNE7	1.3e-31	52.53	50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 G...	[more]
sp\|Q5N0U8\|RL15_SYNP6	1.3e-31	52.53	50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]

BLAST of Carg01845-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUI5\|A0A0A0KUI5_CUCSA	3.3e-117	90.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609730 PE=3 SV=1	[more]
tr\|A0A1S3BFG1\|A0A1S3BFG1_CUCME	2.3e-115	90.00	50S ribosomal protein L15, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489288...	[more]
tr\|A0A2C9UKG6\|A0A2C9UKG6_MANES	9.2e-104	77.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102900 PE=3 SV=...	[more]
tr\|A0A067JZV6\|A0A067JZV6_JATCU	1.5e-101	78.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18333 PE=3 SV=1	[more]
tr\|D7T943\|D7T943_VITVI	6.2e-100	77.27	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g03590 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR036227	L18e/L15P_sf
IPR030878	Ribosomal_L15
IPR001196	Ribosomal_L15_CS
IPR021131	Ribosomal_L18e/L15P
IPR005749	Ribosomal_L15_bac-type

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg01845	Carg01845	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg01845-RA	Carg01845-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01845-RA.three_prime_UTR.1	Carg01845-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01845-RA.CDS.4	Carg01845-RA.CDS.4	CDS
Carg01845-RA.CDS.3	Carg01845-RA.CDS.3	CDS
Carg01845-RA.CDS.2	Carg01845-RA.CDS.2	CDS
Carg01845-RA.CDS.1	Carg01845-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01845-RA.five_prime_UTR.1	Carg01845-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg01845-RA.exon.4	Carg01845-RA.exon.4	exon
Carg01845-RA.exon.3	Carg01845-RA.exon.3	exon
Carg01845-RA.exon.2	Carg01845-RA.exon.2	exon
Carg01845-RA.exon.1	Carg01845-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005749	Ribosomal protein L15, bacterial-type	TIGRFAM	TIGR01071	TIGR01071	coord: 78..228 e-value: 7.9E-39 score: 130.7
IPR005749	Ribosomal protein L15, bacterial-type	PANTHER	PTHR12934	50S RIBOSOMAL PROTEIN L15	coord: 64..257
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 102..229 e-value: 1.9E-30 score: 105.9
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 150..232 e-value: 1.6E-18 score: 68.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..126
None	No IPR available	PANTHER	PTHR12934:SF11	50S RIBOSOMAL PROTEIN L15, CHLOROPLASTIC	coord: 64..257
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 195..225
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 78..231 score: 18.338
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	SSF52080	Ribosomal proteins L15p and L18e	coord: 79..230