Carg00735-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00735-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide repeat-containing domain
Location	Cucurbita_argyrosperma_scaffold_014 : 1194877 .. 1195512 (-)
Sequence length	636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCGCCGGAAGCCATGATACAAGTAGCCCTCTTCATTCTCACAGCAGCGACGATGTTAGCCGTACGAGAACTTTCCAAGCGAGCTTTCGGCAAGGTCCGCCTGAAGAACAGAGCGATCCTCCAATCCAGTCGCCACTTCCTCGAGGGAACTCATCTACTCGCTCGAGCACGATCTACTTCTCAACAATCTCAATCGATGGACTACGCGAAGAAGGCACTAAACGAGGCCGAAACGGCGCTCTCGCTTTCGCCTAGAGATCCGGCATCGCACATCTTGAAAGCCCTAGCCTTAAATCACATGGGTCACCACAGCTCCGCACTTAAATCTCTCGACGTCGCACTTTCGCCGCCGTGCTTGAAGTCATTATCCGAAAAAGAGGTCGCTAAGGCGTTGGTCAAGAGAGCCGAATTGAAAATAGCCGTCAATCGGAAACGACGACTCGACTCGGCGGTGGAAGACTTGCTGCAGGCGGTGAGTTTGGGCGGAGATGACACGAAGGCCTTCTGTTTGTTGGGCCAATGTTACGAATGGAAGAAAATGAAAGATGAGGCCAGACAGGCTTTTGAGAAGGCCTTAACTGTAGATCCTGAATCAGCCCCGGCTCGCGAGGCATTGGGCCGACTGAATTAA

mRNA sequence

ATGATGTCGCCGGAAGCCATGATACAAGTAGCCCTCTTCATTCTCACAGCAGCGACGATGTTAGCCGTACGAGAACTTTCCAAGCGAGCTTTCGGCAAGGTCCGCCTGAAGAACAGAGCGATCCTCCAATCCAGTCGCCACTTCCTCGAGGGAACTCATCTACTCGCTCGAGCACGATCTACTTCTCAACAATCTCAATCGATGGACTACGCGAAGAAGGCACTAAACGAGGCCGAAACGGCGCTCTCGCTTTCGCCTAGAGATCCGGCATCGCACATCTTGAAAGCCCTAGCCTTAAATCACATGGGTCACCACAGCTCCGCACTTAAATCTCTCGACGTCGCACTTTCGCCGCCGTGCTTGAAGTCATTATCCGAAAAAGAGGTCGCTAAGGCGTTGGTCAAGAGAGCCGAATTGAAAATAGCCGTCAATCGGAAACGACGACTCGACTCGGCGGTGGAAGACTTGCTGCAGGCGGTGAGTTTGGGCGGAGATGACACGAAGGCCTTCTGTTTGTTGGGCCAATGTTACGAATGGAAGAAAATGAAAGATGAGGCCAGACAGGCTTTTGAGAAGGCCTTAACTGTAGATCCTGAATCAGCCCCGGCTCGCGAGGCATTGGGCCGACTGAATTAA

Coding sequence (CDS)

ATGATGTCGCCGGAAGCCATGATACAAGTAGCCCTCTTCATTCTCACAGCAGCGACGATGTTAGCCGTACGAGAACTTTCCAAGCGAGCTTTCGGCAAGGTCCGCCTGAAGAACAGAGCGATCCTCCAATCCAGTCGCCACTTCCTCGAGGGAACTCATCTACTCGCTCGAGCACGATCTACTTCTCAACAATCTCAATCGATGGACTACGCGAAGAAGGCACTAAACGAGGCCGAAACGGCGCTCTCGCTTTCGCCTAGAGATCCGGCATCGCACATCTTGAAAGCCCTAGCCTTAAATCACATGGGTCACCACAGCTCCGCACTTAAATCTCTCGACGTCGCACTTTCGCCGCCGTGCTTGAAGTCATTATCCGAAAAAGAGGTCGCTAAGGCGTTGGTCAAGAGAGCCGAATTGAAAATAGCCGTCAATCGGAAACGACGACTCGACTCGGCGGTGGAAGACTTGCTGCAGGCGGTGAGTTTGGGCGGAGATGACACGAAGGCCTTCTGTTTGTTGGGCCAATGTTACGAATGGAAGAAAATGAAAGATGAGGCCAGACAGGCTTTTGAGAAGGCCTTAACTGTAGATCCTGAATCAGCCCCGGCTCGCGAGGCATTGGGCCGACTGAATTAA

Protein sequence

MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARSTSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCLKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWKKMKDEARQAFEKALTVDPESAPAREALGRLN

Homology

[Close]

BLAST of Carg00735-RA vs. NCBI nr
Match: XP_022950520.1 (uncharacterized protein LOC111453603 [Cucurbita moschata])

HSP 1 Score: 390.6 bits (1002), Expect = 3.4e-105
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60
           MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS
Sbjct: 1   MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60

Query: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC 120
           TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC
Sbjct: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC 120

Query: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180
           LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK
Sbjct: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180

Query: 181 KMKDEARQAFEKALTVDPESAPAREALGRLN 212
           KMKDEARQAFEKALTVDPESAPAREALGRLN
Sbjct: 181 KMKDEARQAFEKALTVDPESAPAREALGRLN 211

[Close]

BLAST of Carg00735-RA vs. NCBI nr
Match: XP_022978825.1 (uncharacterized protein LOC111478668 [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 1.4e-103
Identity = 207/211 (98.10%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60
           MMSPEA+IQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS
Sbjct: 1   MMSPEAVIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60

Query: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC 120
            SQQSQSMDYAKKA+NEAETALSLSPRDPASHILKALALNHMGHHSSALKSLD+ALSPPC
Sbjct: 61  ISQQSQSMDYAKKAVNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDIALSPPC 120

Query: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180
           LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK
Sbjct: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180

Query: 181 KMKDEARQAFEKALTVDPESAPAREALGRLN 212
           KMKDEARQAFEKALTVDPESAPAREALGRLN
Sbjct: 181 KMKDEARQAFEKALTVDPESAPAREALGRLN 211

[Close]

BLAST of Carg00735-RA vs. NCBI nr
Match: XP_023543662.1 (uncharacterized protein LOC111803474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 1.9e-103
Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60
           M+SPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS
Sbjct: 1   MVSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60

Query: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC 120
           TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGH SSALKSLDVALSPPC
Sbjct: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHQSSALKSLDVALSPPC 120

Query: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180
           LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK
Sbjct: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWK 180

Query: 181 KMKDEARQAFEKALTVDPESAPAREALGRLN 212
           KMKDEAR+AFEKALTVDPESAPAREALGRLN
Sbjct: 181 KMKDEAREAFEKALTVDPESAPAREALGRLN 211

[Close]

BLAST of Carg00735-RA vs. NCBI nr
Match: XP_022132455.1 (uncharacterized protein LOC111005306 [Momordica charantia])

HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91
Identity = 186/210 (88.57%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           MSPEAMIQVALFILTAAT+LAVRELSKRAFGKVR KNRAILQSSRHF EGTHLLARARST
Sbjct: 1   MSPEAMIQVALFILTAATLLAVRELSKRAFGKVRPKNRAILQSSRHFFEGTHLLARARST 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
           SQQSQS DYAKKAL EAETALSLSP+DPASHILKALAL+HMGH SSALKSLDVALSPPCL
Sbjct: 61  SQQSQSFDYAKKALTEAETALSLSPKDPASHILKALALDHMGHQSSALKSLDVALSPPCL 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGDDTKAFCLLGQCYEWKK 181
           KSLS +E+ KAL+KRAELKIAVNRKRRLDSAVEDLL+AV LG  D K FCLLGQCYEWK+
Sbjct: 121 KSLSGRELGKALIKRAELKIAVNRKRRLDSAVEDLLEAVRLGVQDPKGFCLLGQCYEWKQ 180

Query: 182 MKDEARQAFEKALTVDPESAPAREALGRLN 212
           MKDEA+QAFEKALTVDPES+PARE L RLN
Sbjct: 181 MKDEAKQAFEKALTVDPESSPAREGLERLN 210

[Close]

BLAST of Carg00735-RA vs. NCBI nr
Match: XP_008236271.1 (PREDICTED: uncharacterized protein LOC103335053 [Prunus mume])

HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 133/212 (62.74%), Postives = 168/212 (79.25%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+PE ++Q+ L ILT A   A+ ++S++A  K+R  NRA LQS+RHF++G+HLL RARS 
Sbjct: 1   MAPEVVLQLGLLILTLAMFFAIHKISRKALTKLRTNNRANLQSTRHFVQGSHLLTRARSN 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
             ++QS  +AK AL EAE AL+LSPRDP  HILKALAL+ +GH +SALKS DVALSPPC+
Sbjct: 61  PHKAQSQAHAKNALTEAEKALALSPRDPGPHILKALALDLLGHKTSALKSFDVALSPPCV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLG---GDDTKAFCLLGQCYE 181
           KSLSE+E  +ALVKRAELKI +NR+RR+DSAVEDL+QAV L    GDD  +FCLLGQCYE
Sbjct: 121 KSLSERERGEALVKRAELKIGLNRRRRVDSAVEDLVQAVRLSRGEGDDVTSFCLLGQCYE 180

Query: 182 WKKMKDEARQAFEKALTVDPESAPAREALGRL 211
           WK+MK+EAR+AFE+AL  +P S  AR+ L RL
Sbjct: 181 WKEMKEEAREAFERALRAEPGSVLARQGLDRL 212

[Close]

BLAST of Carg00735-RA vs. TAIR10
Match: AT5G65520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-46
Identity = 106/202 (52.48%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 1   MMSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARS 60
           M + E +IQ A+ +LT     A++ LS+R   K R K+RA LQ+ R  ++ + LLARAR+
Sbjct: 1   MATTETIIQGAILVLTLVMFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARART 60

Query: 61  TSQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPC 120
           T ++SQS   AK AL EA+  +++SP D A HI++ALAL+ +GHH+SALKS D+AL+ P 
Sbjct: 61  TPKKSQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPR 120

Query: 121 LKSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSL--GGDDTKAFCLLGQCYE 180
           LKSLS  E A ALVKRAE+K+AVNR+RR+DSAVEDL +AV L  G D  + F LLG+CYE
Sbjct: 121 LKSLSVGERADALVKRAEMKLAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYE 180

Query: 181 WKKMKDEARQAFEKALTVDPES 201
           +K +K++A+ AF +AL   P S
Sbjct: 181 FKGLKEKAQWAFNEALKAQPSS 202

[Close]

BLAST of Carg00735-RA vs. TrEMBL
Match: tr|A0A251NVU0|A0A251NVU0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G203100 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.4e-62
Identity = 133/212 (62.74%), Postives = 167/212 (78.77%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+PE ++Q+ L ILT A   A+ ++S++A  K+R  NRA LQS+RHF++G+HLL RARS 
Sbjct: 1   MAPEVVLQLGLLILTLAMFFAIHKISRKALTKLRTNNRANLQSTRHFVQGSHLLTRARSN 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
             ++QS  +AK AL EAE AL+LSPRDP  HILKALAL+ +GH +SALKS DVALSPPC+
Sbjct: 61  PHKAQSQAHAKNALTEAEKALALSPRDPGPHILKALALDLLGHKTSALKSFDVALSPPCV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLG---GDDTKAFCLLGQCYE 181
           KSLSE+E  +ALVKRAELKI +NR+RR+DSAVEDL+QAV L    GDD  +FCLLGQCYE
Sbjct: 121 KSLSERERGEALVKRAELKIGLNRRRRVDSAVEDLVQAVRLSRGEGDDVTSFCLLGQCYE 180

Query: 182 WKKMKDEARQAFEKALTVDPESAPAREALGRL 211
           WK MK+EAR+AFE+AL  +P S  AR+ L RL
Sbjct: 181 WKGMKEEAREAFERALRAEPGSVLARQGLDRL 212

[Close]

BLAST of Carg00735-RA vs. TrEMBL
Match: tr|A0A2P6RPV8|A0A2P6RPV8_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0111021 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.4e-61
Identity = 135/211 (63.98%), Postives = 169/211 (80.09%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+ E ++QVAL ILT A   A+ +LSK+A  K+R  NRA LQ++RHF+ G+ LL RARST
Sbjct: 1   MAAEVVLQVALLILTLAIFFAIHKLSKQALTKLRTNNRATLQATRHFVLGSQLLTRARST 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
             ++QS  +AK AL EAE ALSLSPRDP  HILKALAL+ +GH +SAL+SLD ALSPPC+
Sbjct: 61  PHKTQSHSHAKSALTEAEKALSLSPRDPGPHILKALALDLLGHRTSALRSLDAALSPPCV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSL--GGDDTKAFCLLGQCYEW 181
           KSL+++E  +ALVKRAELK+A+NR+RR+DSAVEDL++AV L  G DDT AFCLLGQCYE 
Sbjct: 121 KSLADRERGEALVKRAELKLALNRRRRVDSAVEDLVEAVGLSSGEDDTTAFCLLGQCYER 180

Query: 182 KKMKDEARQAFEKALTVDPESAPAREALGRL 211
           K M+DEAR+AFE+ALT+D  SA AR+ L RL
Sbjct: 181 KGMRDEAREAFERALTMDSGSALARQGLDRL 211

[Close]

BLAST of Carg00735-RA vs. TrEMBL
Match: tr|A0A2N9EF42|A0A2N9EF42_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1264 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 124/210 (59.05%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+PE ++Q+A+  L  A  +A+++L + A  K+R K+RA LQ++RHF+ G+HLLARARST
Sbjct: 1   MAPEIVVQLAILTLALAMFIAIQKLPREALTKLRTKHRATLQTNRHFVHGSHLLARARST 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
           + ++QS  +AK AL EAE ALSLSP+DPA  +LKALAL+ MGH  SALKSLD+ALSPP +
Sbjct: 61  NHRTQSQAHAKSALIEAEKALSLSPKDPAPQLLKALALDLMGHKVSALKSLDLALSPPRV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGG--DDTKAFCLLGQCYEW 181
           +SLSE E   ALVKRAELK+A+NR+RR+DSAV+DL++AV L G  D   AFCLLG+CYEW
Sbjct: 121 RSLSESERGDALVKRAELKLAMNRRRRVDSAVDDLVEAVKLSGMNDKATAFCLLGECYEW 180

Query: 182 KKMKDEARQAFEKALTVDPESAPAREALGR 210
           K M+ EAR+AF++AL V+P S  AR+   R
Sbjct: 181 KGMRQEAREAFQEALRVEPGSVAARQGFDR 210

[Close]

BLAST of Carg00735-RA vs. TrEMBL
Match: tr|A0A2I4ELF1|A0A2I4ELF1_9ROSI (uncharacterized protein LOC108990655 isoform X2 OS=Juglans regia OX=51240 GN=LOC108990655 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 124/211 (58.77%), Postives = 163/211 (77.25%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+PE ++Q+AL  L  A   A+  L K A  K+R K+RA L S+RHF++G+HLL RARST
Sbjct: 1   MAPEIVLQLALLTLALAMFFAIHRLPKGALTKLRTKHRATLLSNRHFVQGSHLLDRARST 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
             + QS+ +AK AL EAE A+SLSP+DPA HILKA+AL+ +GH +SAL+SLD+ALS P +
Sbjct: 61  PHRIQSLTHAKSALLEAEKAVSLSPKDPAPHILKAMALDLLGHKTSALRSLDLALSSPRV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGD-DTKAFCLLGQCYEWK 181
           +S+  KE   ALVKRAELK+ +NRKRR+DSAVEDL++AV L G+ +T+A+CLLG+CYEWK
Sbjct: 121 RSIVGKERGDALVKRAELKLGMNRKRRVDSAVEDLVEAVRLSGNSNTRAYCLLGECYEWK 180

Query: 182 KMKDEARQAFEKALTVDPESAPAREALGRLN 212
             K+EAR+AFE AL V P+S  AR AL RL+
Sbjct: 181 GRKEEAREAFENALRVQPDSVAARHALDRLS 211

[Close]

BLAST of Carg00735-RA vs. TrEMBL
Match: tr|A0A2I4ELF5|A0A2I4ELF5_9ROSI (uncharacterized protein LOC108990655 isoform X3 OS=Juglans regia OX=51240 GN=LOC108990655 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 124/211 (58.77%), Postives = 163/211 (77.25%), Query Frame = 0


Query: 2   MSPEAMIQVALFILTAATMLAVRELSKRAFGKVRLKNRAILQSSRHFLEGTHLLARARST 61
           M+PE ++Q+AL  L  A   A+  L K A  K+R K+RA L S+RHF++G+HLL RARST
Sbjct: 1   MAPEIVLQLALLTLALAMFFAIHRLPKGALTKLRTKHRATLLSNRHFVQGSHLLDRARST 60

Query: 62  SQQSQSMDYAKKALNEAETALSLSPRDPASHILKALALNHMGHHSSALKSLDVALSPPCL 121
             + QS+ +AK AL EAE A+SLSP+DPA HILKA+AL+ +GH +SAL+SLD+ALS P +
Sbjct: 61  PHRIQSLTHAKSALLEAEKAVSLSPKDPAPHILKAMALDLLGHKTSALRSLDLALSSPRV 120

Query: 122 KSLSEKEVAKALVKRAELKIAVNRKRRLDSAVEDLLQAVSLGGD-DTKAFCLLGQCYEWK 181
           +S+  KE   ALVKRAELK+ +NRKRR+DSAVEDL++AV L G+ +T+A+CLLG+CYEWK
Sbjct: 121 RSIVGKERGDALVKRAELKLGMNRKRRVDSAVEDLVEAVRLSGNSNTRAYCLLGECYEWK 180

Query: 182 KMKDEARQAFEKALTVDPESAPAREALGRLN 212
             K+EAR+AFE AL V P+S  AR AL RL+
Sbjct: 181 GRKEEAREAFENALRVQPDSVAARHALDRLS 211

The following BLAST results are available for this feature:

BLAST of Carg00735-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950520.1	3.4e-105	100.00	uncharacterized protein LOC111453603 [Cucurbita moschata]	[more]
XP_022978825.1	1.4e-103	98.10	uncharacterized protein LOC111478668 [Cucurbita maxima]	[more]
XP_023543662.1	1.9e-103	98.58	uncharacterized protein LOC111803474 [Cucurbita pepo subsp. pepo]	[more]
XP_022132455.1	1.7e-91	88.57	uncharacterized protein LOC111005306 [Momordica charantia]	[more]
XP_008236271.1	1.6e-62	62.74	PREDICTED: uncharacterized protein LOC103335053 [Prunus mume]	[more]

BLAST of Carg00735-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65520.1	1.5e-46	52.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg00735-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00735-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251NVU0\|A0A251NVU0_PRUPE	2.4e-62	62.74	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G203100 PE=4 SV=1	[more]
tr\|A0A2P6RPV8\|A0A2P6RPV8_ROSCH	3.4e-61	63.98	Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A2N9EF42\|A0A2N9EF42_FAGSY	1.1e-56	59.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1264 PE=4 SV=1	[more]
tr\|A0A2I4ELF1\|A0A2I4ELF1_9ROSI	1.6e-55	58.77	uncharacterized protein LOC108990655 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4ELF5\|A0A2I4ELF5_9ROSI	1.6e-55	58.77	uncharacterized protein LOC108990655 isoform X3 OS=Juglans regia OX=51240 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR001440	TPR_1
IPR011990	TPR-like_helical_dom_sf
IPR019734	TPR_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg00735	Carg00735	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00735-RA.CDS.1	Carg00735-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00735-RA.exon.1	Carg00735-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg00735-RA	Carg00735-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 167..200 e-value: 5.7E-6 score: 35.8
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 167..200 score: 10.738
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 16..141 e-value: 2.8E-7 score: 32.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 142..211 e-value: 8.4E-12 score: 47.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 71..208
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 168..199 e-value: 1.3E-7 score: 31.1
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 2..211
None	No IPR available	PANTHER	PTHR26312:SF112	SUBFAMILY NOT NAMED	coord: 2..211
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 130..211 score: 13.0