Carg00430-RA (mRNA) Silver-seed gourd

Overview
NameCarg00430-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_001 : 2415785 .. 2417609 (+)
Sequence length180
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGTATTGTCATTCAACTCTCTCAAGTCTGAACTTCTTGTTTCCGTTATCCTATTGTTGTTCGTCCTTCTCCATTTCATGATTGAAACTGTGAGAGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGGTGTTAAGCCTACGCCATTTGAATCGCCATTTTTTCAAGTCTGTGATCTGATTTTGAGTCTTACATTCTGGCGTTCTACTGTCGATTGTTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCGTCTGATATTTTTGTTGAATCATTTCTACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTACTGGCAGGCGTCATGTCTGTGGATTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTAAACGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTTATCAGTATTCGCCTTTAGATTCTTGAACATTGCTAGTTCATATTTTTCATCATATCATTTAGCCCCCTTGCCTTCAATAACGTTTGGGTTTATAGGAATCTGATCAAATATTTTCTTATAGATAGAATATTTCTGCCGAAGTCCGTCTTTCTCTTTATTTAATCGATTTTGTTACTTCAACCATTGTTTATACAATGGGGGAATTGGTAAGAGGTTAGAAGACTGAGGAACAAAACTTGGACCCGAAGTTGGTGTAGCTTGATTAGTTTCGGTAGAGCCAATTCATAAATATGTATGGCTCAAGTATACAATTCATAACTGACCTTCATTTACAATGGACAATTATCAGAATTTCCTAGCTTACCCTAGTAGAGAGACTACAAATACACAGTTCATAATCATACAATTCTACAGAACTATATGTTCTGAAAGAGGACATTCTTTGTGAGACTCTTCAATAAAGTACTTAGAACAATAGTTGTCCTAACTGAATAATCTTTGTCAATTGCCCGTGGGATGTCGTAGCTGTGCCTTTTCTTGTCATTATAGTGGGTGGAAGCAGAGAACTTGGGTGTACCTAGGCGCTCATTTGCAGCTCATCACCATATTTTAGAACCCTAACCTTATTCAATGTGGCTGCCATGCCATGGTGTGAAGTAAACTGCATTTGTTGCATTTGTGTGGATGTCCAATAGGTAGGCCCCTGTTTGATTGCCCAACAAAATAGTTGTTTAGTGAATAACTCAACCTATGACTTACTTAGAACCATCCCAAGCTCAGAGAAGAAAATATTTTTGATGAAGTGAAAGCAAACAATGAATGCTTCAACAGGTTTGAAGTGAGAATAGTTTGTTTCGATAATCGAGAGAGAGTGATGGAAGGAATAGACTATAGAAAGAAGGATCAGTCTCTGTTGCCATATGGGGATGATTGGATTTTGATGCCCTAATCTCAATTCAATCGACCAAGTTCGTTCATCGGGTTATCCTTTGTTGGCTCCTTGATAGGATCTAACCGAAATTAGTTTTTTTTTAATCTTTGTTTTTGCCTATTAGATTGGATTTGGCAAATTAA

mRNA sequence

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Coding sequence (CDS)

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Protein sequence

MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Homology
[Close]
BLAST of Carg00430-RA vs. NCBI nr
Match: ACU14423.1 (unknown, partial [Glycine max])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]
BLAST of Carg00430-RA vs. NCBI nr
Match: PKA65509.1 (hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica])

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-08
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 29 VAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]
BLAST of Carg00430-RA vs. TrEMBL
Match: tr|C6SYV0|C6SYV0_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]
BLAST of Carg00430-RA vs. TrEMBL
Match: tr|A0A2I0BCI7|A0A2I0BCI7_9ASPA (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 29 VAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]
BLAST of Carg00430-RA vs. TrEMBL
Match: tr|M0T0W0|M0T0W0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 4   VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
           V+QD  +QEEA EED  EQA P LDP E+RQ++Q+QR+AQALA HQ RVLR
Sbjct: 50  VAQDVPDQEEAGEEDAPEQADPPLDPHEDRQHHQVQREAQALAPHQVRVLR 100

The following BLAST results are available for this feature:
BLAST of Carg00430-RA vs. NCBI nr
Match NameE-valueIdentityDescription
ACU14423.13.7e-0970.59unknown, partial [Glycine max][more]
PKA65509.17.1e-0868.63hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica][more]
BLAST of Carg00430-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00430-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00430-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|C6SYV0|C6SYV0_SOYBN2.5e-0970.59Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
tr|A0A2I0BCI7|A0A2I0BCI7_9ASPA4.7e-0868.63Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 P... [more]
tr|M0T0W0|M0T0W0_MUSAM5.2e-0766.67Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg00430Carg00430gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg00430-RACarg00430-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg00430-RA.exon.1Carg00430-RA.exon.1exon
Carg00430-RA.exon.2Carg00430-RA.exon.2exon
Carg00430-RA.exon.3Carg00430-RA.exon.3exon
Carg00430-RA.exon.4Carg00430-RA.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg00430-RA.CDS.1Carg00430-RA.CDS.1CDS
Carg00430-RA.CDS.2Carg00430-RA.CDS.2CDS
Carg00430-RA.CDS.3Carg00430-RA.CDS.3CDS
Carg00430-RA.CDS.4Carg00430-RA.CDS.4CDS


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31