Carg00430 (gene) Silver-seed gourd

Overview
NameCarg00430
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_001 : 2415785 .. 2417609 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGTATTGTCATTCAACTCTCTCAAGTCTGAACTTCTTGTTTCCGTTATCCTATTGTTGTTCGTCCTTCTCCATTTCATGATTGAAACTGTGAGAGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGGTGTTAAGCCTACGCCATTTGAATCGCCATTTTTTCAAGTCTGTGATCTGATTTTGAGTCTTACATTCTGGCGTTCTACTGTCGATTGTTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCGTCTGATATTTTTGTTGAATCATTTCTACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTACTGGCAGGCGTCATGTCTGTGGATTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTAAACGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTTATCAGTATTCGCCTTTAGATTCTTGAACATTGCTAGTTCATATTTTTCATCATATCATTTAGCCCCCTTGCCTTCAATAACGTTTGGGTTTATAGGAATCTGATCAAATATTTTCTTATAGATAGAATATTTCTGCCGAAGTCCGTCTTTCTCTTTATTTAATCGATTTTGTTACTTCAACCATTGTTTATACAATGGGGGAATTGGTAAGAGGTTAGAAGACTGAGGAACAAAACTTGGACCCGAAGTTGGTGTAGCTTGATTAGTTTCGGTAGAGCCAATTCATAAATATGTATGGCTCAAGTATACAATTCATAACTGACCTTCATTTACAATGGACAATTATCAGAATTTCCTAGCTTACCCTAGTAGAGAGACTACAAATACACAGTTCATAATCATACAATTCTACAGAACTATATGTTCTGAAAGAGGACATTCTTTGTGAGACTCTTCAATAAAGTACTTAGAACAATAGTTGTCCTAACTGAATAATCTTTGTCAATTGCCCGTGGGATGTCGTAGCTGTGCCTTTTCTTGTCATTATAGTGGGTGGAAGCAGAGAACTTGGGTGTACCTAGGCGCTCATTTGCAGCTCATCACCATATTTTAGAACCCTAACCTTATTCAATGTGGCTGCCATGCCATGGTGTGAAGTAAACTGCATTTGTTGCATTTGTGTGGATGTCCAATAGGTAGGCCCCTGTTTGATTGCCCAACAAAATAGTTGTTTAGTGAATAACTCAACCTATGACTTACTTAGAACCATCCCAAGCTCAGAGAAGAAAATATTTTTGATGAAGTGAAAGCAAACAATGAATGCTTCAACAGGTTTGAAGTGAGAATAGTTTGTTTCGATAATCGAGAGAGAGTGATGGAAGGAATAGACTATAGAAAGAAGGATCAGTCTCTGTTGCCATATGGGGATGATTGGATTTTGATGCCCTAATCTCAATTCAATCGACCAAGTTCGTTCATCGGGTTATCCTTTGTTGGCTCCTTGATAGGATCTAACCGAAATTAGTTTTTTTTTAATCTTTGTTTTTGCCTATTAGATTGGATTTGGCAAATTAA

mRNA sequence

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Coding sequence (CDS)

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Protein sequence

MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Homology
[Close]
BLAST of Carg00430 vs. NCBI nr
Match: ACU14423.1 (unknown, partial [Glycine max])

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]
BLAST of Carg00430 vs. NCBI nr
Match: PKA65509.1 (hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica])

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-08
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 29 VAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]
BLAST of Carg00430 vs. TrEMBL
Match: tr|C6SYV0|C6SYV0_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]
BLAST of Carg00430 vs. TrEMBL
Match: tr|A0A2I0BCI7|A0A2I0BCI7_9ASPA (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QDFQ++EEA EEDEAEQA+P LDP E+ ++ QIQR+AQALA H+ARVL+
Sbjct: 29 VAQDFQDKEEAGEEDEAEQAHPLLDPHEDGEHNQIQRQAQALAPHKARVLK 79

[Close]
BLAST of Carg00430 vs. TrEMBL
Match: tr|M0T0W0|M0T0W0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 4   VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
           V+QD  +QEEA EED  EQA P LDP E+RQ++Q+QR+AQALA HQ RVLR
Sbjct: 50  VAQDVPDQEEAGEEDAPEQADPPLDPHEDRQHHQVQREAQALAPHQVRVLR 100

The following BLAST results are available for this feature:
BLAST of Carg00430 vs. NCBI nr
Match NameE-valueIdentityDescription
ACU14423.13.7e-0970.59unknown, partial [Glycine max][more]
PKA65509.17.1e-0868.63hypothetical protein AXF42_Ash005843 [Apostasia shenzhenica][more]
BLAST of Carg00430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg00430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|C6SYV0|C6SYV0_SOYBN2.5e-0970.59Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
tr|A0A2I0BCI7|A0A2I0BCI7_9ASPA4.7e-0868.63Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash005843 P... [more]
tr|M0T0W0|M0T0W0_MUSAM5.2e-0766.67Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00430-RACarg00430-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00430CmaCh01G014800Cucurbita maxima (Rimu)carcmaB0947
Carg00430CmoCh01G015360Cucurbita moschata (Rifu)carcmoB0922
Carg00430Cp4.1LG02g03980Cucurbita pepo (Zucchini)carcpeB0943
Carg00430Cp4.1LG06g03120Cucurbita pepo (Zucchini)carcpeB0948
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00430Cucumber (Gy14) v1carcgyB0750
Carg00430Cucumber (Gy14) v1carcgyB0752
Carg00430Cucurbita maxima (Rimu)carcmaB0933
Carg00430Cucurbita maxima (Rimu)carcmaB0938
Carg00430Cucurbita moschata (Rifu)carcmoB0907
Carg00430Cucurbita moschata (Rifu)carcmoB0912
Carg00430Wild cucumber (PI 183967)carcpiB0692
Carg00430Wild cucumber (PI 183967)carcpiB0693
Carg00430Wild cucumber (PI 183967)carcpiB0700
Carg00430Cucumber (Chinese Long) v2carcuB0689
Carg00430Cucumber (Chinese Long) v2carcuB0681
Carg00430Cucumber (Chinese Long) v3carcucB0694
Carg00430Cucumber (Chinese Long) v3carcucB0695
Carg00430Cucumber (Chinese Long) v3carcucB0702
Carg00430Bottle gourd (USVL1VR-Ls)carlsiB606
Carg00430Melon (DHL92) v3.5.1carmeB0676
Carg00430Melon (DHL92) v3.6.1carmedB0676
Carg00430Melon (DHL92) v3.6.1carmedB0688
Carg00430Watermelon (Charleston Gray)carwcgB0649
Carg00430Watermelon (Charleston Gray)carwcgB0652
Carg00430Watermelon (97103) v1carwmB0661
Carg00430Watermelon (97103) v1carwmB0669
Carg00430Watermelon (97103) v2carwmbB0697
Carg00430Watermelon (97103) v2carwmbB0702
Carg00430Wax gourdcarwgoB0791
Carg00430Silver-seed gourdcarcarB553
Carg00430Silver-seed gourdcarcarB572
Carg00430Cucumber (Gy14) v2carcgybB0656
Carg00430Cucumber (Gy14) v2carcgybB0664