Carg00300-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGCCACCATCCAGCTTCTTCGTGATAGGGTTTTCCATTGTTGCAACCCTCACCCTCGCCTCCTTCGCGTCATGTATGGCTGCTGAATTCAACAGAACAAGTGTAAGTTTCTTCTTTCACTTTCTTTCTCATTTACAGTATTGATTTTTCATACAAAAATTTCCTGAATCATCGAAATCGAAATATGTGGCAGAAAAAGGACCTGAAATTGAACGGCAGATTCTGCTTTCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGGTTTGATCTGTTTAATAATGGCTCAAATCATTGGAAACACTATAATCTGCCATAGCTATTGGCCAAAGGAGAATAGAAAGAGTTGCAGTGTCAAAAGGCCTCTCCTTTCAACCACCCTTCTCATCTCTTGGTCAGTAATTATTTCTTCATATAAATCTTCATTTTTTTCTGTATTTTTTTCAGTTTATCTGGGGATTAAGAAAATGAAACTAACAATAGTAACAAAAAATAAATAAATAAAAACAAAAACAAAAACCTGAAAGTATAATTTTTTTTTTTTTTTTCTTTTTTGGCAATTTCCAAGTTGTGAAGATCCACATATGAATTTAAAAATGAATAGCAGTAACCTGAATTCAAGATCGTTTTGATTTTTTTTTTTTTTTGCAAGATCAAGTAAACTACAAAATAGCATTATTATTAATACTAAAATGATAATAATATATGAGAATTATTTGAAGGATAAAGTAATTTCCTTTGTTCCGGGCATATATTGTTAAGAAAAAACATATAGTACTTATTGTATCATTTAGTCTCCAATATTTTGGTGCTAAATCAATTTCAACATTCATCATCAACAAGAAGACCAAAAAATAATCCAAACATAAGAGAACACTCCTCAATTAAAGTATTTAATAGCTTTTTTTTTAAAATTTAACAGATTCACGAGTTTTAAAATTTGTGTTCAATAACTAATTAAAATAAAATAAAATAACAAAAAAAAAAATATTCATAGACCAACTAAACACAAAATTAAAAATTTAGATTCACCTCGTTTATAAAAACTAATATGGTATACAATAGATCAATTAACTTTTAAAAATTTTGATAGACATAAAATTGAAAATTTAGAATCTACTAGACATTTTAAAATTAGTAAACCTGTTAAACACAAAATTAAAAGCATTTTCTAAAGTTAAAAAAATTAAAGGACTAAACTATAATTTAACCTCTATTTACCAGGAAAATGAAATAAAGAAAAAATATCATTTTGATCCTTAAATTTTTTTTATTAGCTTCAATTTAGTCCCTAAATTTTAAAATATTATTTTACTTGGAGTTTAGTTGTAATTGAATCCTTAAGTTGTGAGATCCTACCTTTGTACCTTTTGAGTTAATAACTTATCGTTTACTTTTGGACTTTGGTATTTGGTATTGATTTAATTAATTAAATATTATGATGTATAATTTTTTTTAATTAATTGAAATAGTGATAATAATTAAACTAATTAATAAAAAATTAACATAAATTATCAAAAGTGATCAGTAATAAAAATTGAAGATAAGTATGTAAAACTTTGAAAGATAGGAACGAAATGAAAACCAAGCTCAAGAAAAAAAATATAAGATCAGATGAAATCTATAAAAAAAATAATAATAATAATAATAAAATAAAAAATAAAAAACTGAATGGCAAGAAATAATAAAAAAAAAAGGCTAAAATAGTAAATAAAATGAAATACCAGGGCCAGCTTTGGAATTGCGGTGGTAATGATGAGTGGAGCCATCAGCATGAGCAGCAGACAAGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATGTGGTGAAAGACCGAATATTTGTTGGCGCGGCCCTATTGATTCTCATTAATGGGGCCTCCACCATATTCTCCGCCGCCATTGCAAGGAAGAGCCACCCTAAAGGGCCCACTCAAATAAATTCACAAATTAGATAA ATGGAAAAGCCACCATCCAGCTTCTTCGTGATAGGGTTTTCCATTGTTGCAACCCTCACCCTCGCCTCCTTCGCGTCATGTATGGCTGCTGAATTCAACAGAACAAGTAAAAAGGACCTGAAATTGAACGGCAGATTCTGCTTTCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGCTATTGGCCAAAGGAGAATAGAAAGAGTTGCAGTGTCAAAAGGCCTCTCCTTTCAACCACCCTTCTCATCTCTTGGTCAGGCCAGCTTTGGAATTGCGGTGGTAATGATGAGTGGAGCCATCAGCATGAGCAGCAGACAAGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATGTGGTGAAAGACCGAATATTTGTTGGCGCGGCCCTATTGATTCTCATTAATGGGGCCTCCACCATATTCTCCGCCGCCATTGCAAGGAAGAGCCACCCTAAAGGGCCCACTCAAATAAATTCACAAATTAGATAA ATGGAAAAGCCACCATCCAGCTTCTTCGTGATAGGGTTTTCCATTGTTGCAACCCTCACCCTCGCCTCCTTCGCGTCATGTATGGCTGCTGAATTCAACAGAACAAGTAAAAAGGACCTGAAATTGAACGGCAGATTCTGCTTTCTGCCTGAAAGTGAAGCATTCAAATTGGGAGTCGCAGCTATTGGCCAAAGGAGAATAGAAAGAGTTGCAGTGTCAAAAGGCCTCTCCTTTCAACCACCCTTCTCATCTCTTGGTCAGGCCAGCTTTGGAATTGCGGTGGTAATGATGAGTGGAGCCATCAGCATGAGCAGCAGACAAGAGTATGGGAAGGGGTGGGTGGAAGGAGAATGCTATGTGGTGAAAGACCGAATATTTGTTGGCGCGGCCCTATTGATTCTCATTAATGGGGCCTCCACCATATTCTCCGCCGCCATTGCAAGGAAGAGCCACCCTAAAGGGCCCACTCAAATAAATTCACAAATTAGATAA MEKPPSSFFVIGFSIVATLTLASFASCMAAEFNRTSKKDLKLNGRFCFLPESEAFKLGVAAIGQRRIERVAVSKGLSFQPPFSSLGQASFGIAVVMMSGAISMSSRQEYGKGWVEGECYVVKDRIFVGAALLILINGASTIFSAAIARKSHPKGPTQINSQIR
BLAST of Carg00300-RA vs. NCBI nr
Match: XP_022940987.1 (uncharacterized protein LOC111446405 [Cucurbita moschata] >XP_022940988.1 uncharacterized protein LOC111446405 [Cucurbita moschata]) HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62 Identity = 137/180 (76.11%), Postives = 145/180 (80.56%), Query Frame = 0
BLAST of Carg00300-RA vs. NCBI nr
Match: XP_022937014.1 (uncharacterized protein LOC111443438 [Cucurbita moschata]) HSP 1 Score: 206.8 bits (525), Expect = 5.4e-50 Identity = 117/180 (65.00%), Postives = 129/180 (71.67%), Query Frame = 0
BLAST of Carg00300-RA vs. NCBI nr
Match: XP_023535227.1 (uncharacterized protein LOC111796718 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49 Identity = 116/179 (64.80%), Postives = 128/179 (71.51%), Query Frame = 0
BLAST of Carg00300-RA vs. NCBI nr
Match: XP_022976861.1 (uncharacterized protein LOC111477105 [Cucurbita maxima]) HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48 Identity = 114/179 (63.69%), Postives = 128/179 (71.51%), Query Frame = 0
BLAST of Carg00300-RA vs. NCBI nr
Match: XP_022139149.1 (uncharacterized protein LOC111010123 isoform X1 [Momordica charantia]) HSP 1 Score: 200.7 bits (509), Expect = 3.9e-48 Identity = 115/179 (64.25%), Postives = 129/179 (72.07%), Query Frame = 0
BLAST of Carg00300-RA vs. TAIR10
Match: AT4G19370.1 (Protein of unknown function (DUF1218)) HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16 Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 0
BLAST of Carg00300-RA vs. TAIR10
Match: AT1G31720.1 (Protein of unknown function (DUF1218)) HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14 Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 0
BLAST of Carg00300-RA vs. TrEMBL
Match: tr|A0A1S3B9G0|A0A1S3B9G0_CUCME (uncharacterized protein LOC103487629 OS=Cucumis melo OX=3656 GN=LOC103487629 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 7.7e-45 Identity = 109/182 (59.89%), Postives = 126/182 (69.23%), Query Frame = 0
BLAST of Carg00300-RA vs. TrEMBL
Match: tr|A0A0A0L099|A0A0A0L099_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G247410 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38 Identity = 99/176 (56.25%), Postives = 118/176 (67.05%), Query Frame = 0
BLAST of Carg00300-RA vs. TrEMBL
Match: tr|A0A2R6Q3J7|A0A2R6Q3J7_ACTCH (Glutamate receptor 3.1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22639 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 8.9e-25 Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 0
BLAST of Carg00300-RA vs. TrEMBL
Match: tr|A0A2I4FRH1|A0A2I4FRH1_9ROSI (uncharacterized protein LOC109001429 isoform X1 OS=Juglans regia OX=51240 GN=LOC109001429 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.4e-24 Identity = 72/159 (45.28%), Postives = 96/159 (60.38%), Query Frame = 0
BLAST of Carg00300-RA vs. TrEMBL
Match: tr|A0A2P5D705|A0A2P5D705_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_091140 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23 Identity = 69/176 (39.20%), Postives = 100/176 (56.82%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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