CSPI07G23450.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGCCGTAATCCATATTCTCGACTAGCAAAAGGTTTAGGGAAGGTTTTAGCTCGCACCGAAACCAGTTTCGGAATCAATTACAATCTTAGAACCATGGTTGTGAAGCTCCCAGAAGACGCTTCGAAGTAAAGTCATCCACATTTTCTCATTATCTTCGTCTCTCTGTTTTCCGTCTCTCTGTTTTCTTTTGGGTGTATAATTGTTAAATTGCAGTTTTCCACCATTGTTAATTACTGACCAGTTATTAGCCAACTTGAAAAAAACTGCAGGAATGAGAAGCTAGGTGACAATTCTAATCCAATCGATTCTGACATTGATAAGCAATTCATAGGCCTTCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTCTTCCTGAATTTTTGAAGGTGTAAATCATCACTCTGTTTTTGTTTGTTACGATTATCAGTTTAATATGCAGAAGACACTATAACAGTATATATTACTATGCGTTTGTTTAAATTTTAGCCTATAATTGGTTATTAATACTCATAGTGTTGACCCATCTGGTTGTAGGTAAGAGGTCTGGTCAAGCAACACTTGGATTCGTTTAACTACTTCGTGAATACAGAGATAAAAAAGATAGTCAAGGCCAACGATCGCATTGAATCCAGTACTGATCCGAGTATTTATCTTAGGTACACGTTTTTTCATTTTATATAACCGTCCTTTTGTTAAATACATGGGAGAATATTTTATATCCGAGTATTCTTTTTTTTTTTTTTGGAAAATATATTTTTCATTTTATGTAACCGTCCTCTCGTGGAAAATCTGCTGTTTTCTCTCAAACCACAATTCAGCCAGAGGAGCTGTAGACAAATTTAACCATATTAGTCTAGGCTCTTTGAATTGACAGGCTTTTATCTTTCCTGGCCGTTAGAAGATACCTCTTGATTCAACTCCTATTCAGTTGTCAATCGAGCTTTTATTGAATGGTTCTGTAAAGGGATTTGCCCTCTAGTTACTGTGTTTTTTTGTATGTTTGTTTAGTTTCGTCTTGTTTCTTTTGGCTTTAATGAGCTGCATCCTTGAGTTATTTAGCTTGCGATTATCTTGTTCCAACATGATGAGGGTGCTAAGGGGTGTCAATCTAGTTGGTGCGTCTCCTGATCCATAGGCTTCATAGATTATGCTCTTTGTATAATTCTCTTGTTCCATAAGCATTGGTCTCATTTCATATTATTTAAAAAGAGGTTGGTTTCCTTTTCAAAAAAAGGAAAAAATTTTGGTATTAGAGTTTGGATTCTTTTTTCTAGACATTTGGTATGATGAGTGTTTATTATAGTCAACGGGGACGTAATGAAGGGTTTCCTTTTCAATTCTATGATTGAGGAATTTCTTCCGCCTCCTCCTTCCTCCCCGACAACCAGTCCCCTTTGGCCACCTCCAAATATTTCAGAATGGAGCTTATGTGGCTGATTGCTGGTGTAATGCTACTCATTCTTGGAATTTGGGCCTTAGAAGAAATATGCTCGACAATGAGATTGTCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGGCCCCCACTGAAAGGAATGATAGTCTTAAATGGATTCCTAACATGAATGGCAATTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGCCGTCCCCTTGATTCGTCAGATTTGGAAGAATAAAATCCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATCCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACTTTGGATCACTTATTCCTACATTGTCCCTTCACAAGAAAAGCTTGGAACACGCTGTTTGGTATTTTCGACTTGGAGTTTTGCCTTCCTAGCAAGATTGATAGATGGATGATTGAAGGTCTTAATATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGTCGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAAGTACACCAAACACTTTTGTAATTATAGCCTTTCTATGATTTTCAACAATTTGAAGGCCATTATGTCCTAGCTCTTTAGCTTCTTCCGGGGAGGGCCCTCTTGTCCCTCACCCTTAGGATGTTCTGTTTTGTTATATGAATATACTTGTCTCTTATAAAAAAAAAGAATGGAGGTTTTTAGCTGCAAAATCAACCAATCTCACTATTGTATTTGGAAGGAAAATGAAAGCTGTATCATTGAAGATGTGGAAGCCAACAAAACACCATCACTTACCAATGATCAACTCCGATGGACTCAAAATGCCATTGTTGAACTCCTTAATTCTCCAGTTGAACGCTTCTTCCAAATGCTAGCTGGCATTGTGACGGAATCCAATTGGTATGAATTTACTTCTTATCTACTGAATATAGAACGGGATCGTTCTACGATTACAATATGA ATGGTTGTGAAGCTCCCAGAAGACGCTTCGAAGAATGAGAAGCTAGGTGACAATTCTAATCCAATCGATTCTGACATTGATAAGCAATTCATAGGCCTTCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTCAAGCAACACTTGGATTCGTTTAACTACTTCGTGAATACAGAGATAAAAAAGATAGTCAAGGCCAACGATCGCATTGAATCCAGTACTGATCCGAGTATTTATCTTAGGAATTTCTTCCGCCTCCTCCTTCCTCCCCGACAACCAGTCCCCTTTGGCCACCTCCAAATATTTCAGAATGGAGCTTATGTGGCTGATTGCTGGTGTAATGCTACTCATTCTTGGAATTTGGGCCTTAGAAGAAATATGCTCGACAATGAGATTGTCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGGCCCCCACTGAAAGGAATGATAGTCTTAAATGGATTCCTAACATGAATGGCAATTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGCCGTCCCCTTGATTCGTCAGATTTGGAAGAATAAAATCCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATCCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACTTTGGATCACTTATTCCTACATTGTCCCTTCACAAGAAAAGCTTGGAACACGCTGTTTGGTATTTTCGACTTGGAGTTTTGCCTTCCTAGCAAGATTGATAGATGGATGATTGAAGGTCTTAATATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGTCGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAAGCCATTATGTCCTAGCTCTTTAGCTTCTTCCGGGGAGGGCCCTCTTGAAAATGAAAGCTGTATCATTGAAGATGTGGAAGCCAACAAAACACCATCACTTACCAATGATCAACTCCGATGGACTCAAAATGCCATTGTTGAACTCCTTAATTCTCCAGTTGAACGCTTCTTCCAAATGCTAGCTGGCATTGTGACGGAATCCAATTGGTATGAATTTACTTCTTATCTACTGAATATAGAACGGGATCGTTCTACGATTACAATATGA ATGGTTGTGAAGCTCCCAGAAGACGCTTCGAAGAATGAGAAGCTAGGTGACAATTCTAATCCAATCGATTCTGACATTGATAAGCAATTCATAGGCCTTCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTCTTCCTGAATTTTTGAAGGTAAGAGGTCTGGTCAAGCAACACTTGGATTCGTTTAACTACTTCGTGAATACAGAGATAAAAAAGATAGTCAAGGCCAACGATCGCATTGAATCCAGTACTGATCCGAGTATTTATCTTAGGAATTTCTTCCGCCTCCTCCTTCCTCCCCGACAACCAGTCCCCTTTGGCCACCTCCAAATATTTCAGAATGGAGCTTATGTGGCTGATTGCTGGTGTAATGCTACTCATTCTTGGAATTTGGGCCTTAGAAGAAATATGCTCGACAATGAGATTGTCAATGCGGCCTCAGCTTTAGAAATTCTTCACTCTTGGGCCCCCACTGAAAGGAATGATAGTCTTAAATGGATTCCTAACATGAATGGCAATTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGCCGTCCCCTTGATTCGTCAGATTTGGAAGAATAAAATCCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATCCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACTTTGGATCACTTATTCCTACATTGTCCCTTCACAAGAAAAGCTTGGAACACGCTGTTTGGTATTTTCGACTTGGAGTTTTGCCTTCCTAGCAAGATTGATAGATGGATGATTGAAGGTCTTAATATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGTCGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACACAGCCTCTTGGTGGAGTACGAAGCCATTATGTCCTAGCTCTTTAGCTTCTTCCGGGGAGGGCCCTCTTGAAAATGAAAGCTGTATCATTGAAGATGTGGAAGCCAACAAAACACCATCACTTACCAATGATCAACTCCGATGGACTCAAAATGCCATTGTTGAACTCCTTAATTCTCCAGTTGAACGCTTCTTCCAAATGCTAGCTGGCATTGTGACGGAATCCAATTGGTATGAATTTACTTCTTATCTACTGAATATAGAACGGGATCGTTCTACGATTACAATATGA
BLAST of CSPI07G23450.1 vs. Swiss-Prot
Match: NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.3e-21 Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2) HSP 1 Score: 83.6 bits (205), Expect = 5.9e-15 Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2) HSP 1 Score: 83.2 bits (204), Expect = 7.8e-15 Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2) HSP 1 Score: 82.0 bits (201), Expect = 1.7e-14 Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=2 SV=2) HSP 1 Score: 80.5 bits (197), Expect = 5.0e-14 Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36 Identity = 78/216 (36.11%), Postives = 125/216 (57.87%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36 Identity = 82/219 (37.44%), Postives = 126/219 (57.53%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 7.3e-36 Identity = 82/219 (37.44%), Postives = 126/219 (57.53%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 7.3e-36 Identity = 82/219 (37.44%), Postives = 128/219 (58.45%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35 Identity = 77/216 (35.65%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2) HSP 1 Score: 104.4 bits (259), Expect = 1.8e-22 Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TAIR10
Match: AT3G09510.1 (AT3G09510.1 Ribonuclease H-like superfamily protein) HSP 1 Score: 63.2 bits (152), Expect = 4.7e-10 Identity = 45/175 (25.71%), Postives = 76/175 (43.43%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. TAIR10
Match: AT5G18880.1 (AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 62.4 bits (150), Expect = 8.0e-10 Identity = 48/181 (26.52%), Postives = 81/181 (44.75%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. NCBI nr
Match: gi|778690261|ref|XP_011653085.1| (PREDICTED: uncharacterized protein LOC105435174 [Cucumis sativus]) HSP 1 Score: 186.8 bits (473), Expect = 8.0e-44 Identity = 87/137 (63.50%), Postives = 106/137 (77.37%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. NCBI nr
Match: gi|778730035|ref|XP_004141655.2| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis sativus]) HSP 1 Score: 181.8 bits (460), Expect = 2.6e-42 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. NCBI nr
Match: gi|659124980|ref|XP_008462447.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis melo]) HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. NCBI nr
Match: gi|147798966|emb|CAN68165.1| (hypothetical protein VITISV_008538 [Vitis vinifera]) HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36 Identity = 78/216 (36.11%), Postives = 125/216 (57.87%), Query Frame = 1
BLAST of CSPI07G23450.1 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera]) HSP 1 Score: 161.0 bits (406), Expect = 4.7e-36 Identity = 82/219 (37.44%), Postives = 126/219 (57.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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