CSPI07G21770.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G21770.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 18536030 .. 18536614 (+)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAACAGTATCAAGTAAACGGTCCTAACAGGTGAAGGCAAATCAATGAATTATCATATGGTTTATATTCTCCTCTGCACGTCAACAGTTTTTGGTTTGCAGAGTAATAAACCTCCATCGATACTGAAATCAATGGGCAGGTAGGAAGATGAGCAAAATCCAGCGATGTGATTCTATTTCATTTAAACCAATGTGATATAGGTATCAGGGCTAAAAAACTTTTTTTTTTCAAACCCTAGTTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG

mRNA sequence

ATGCCAAACAGTATCAATTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG

Coding sequence (CDS)

ATGCCAAACAGTATCAATTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG

Homology

[Close]

BLAST of CSPI07G21770.1 vs. TrEMBL
Match: A0A0A0KC93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447730 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 6  NFNLEHQTLAASPSQRRWKPTGTLATVFNSTQYLRRVCGRSIYSCLSDHPLVHPTRRLGS 65
          +FNLEHQTLAASPSQRRWKPTGTLATVFNS QYLRRVCGRSIYSCLSDHPLVHP RRLGS
Sbjct: 3  SFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRLGS 62

Query: 66 PF-----------CSRV--WRHCSLALFALEV 85
          PF           CSR+   R CS  L+   V
Sbjct: 63 PFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV 94

[Close]

BLAST of CSPI07G21770.1 vs. NCBI nr
Match: gi|700190178|gb|KGN45411.1| (hypothetical protein Csa_7G447730 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-27
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 6  NFNLEHQTLAASPSQRRWKPTGTLATVFNSTQYLRRVCGRSIYSCLSDHPLVHPTRRLGS 65
          +FNLEHQTLAASPSQRRWKPTGTLATVFNS QYLRRVCGRSIYSCLSDHPLVHP RRLGS
Sbjct: 3  SFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRLGS 62

Query: 66 PF-----------CSRV--WRHCSLALFALEV 85
          PF           CSR+   R CS  L+   V
Sbjct: 63 PFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV 94

The following BLAST results are available for this feature:

BLAST of CSPI07G21770.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G21770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC93_CUCSA	2.2e-27	72.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447730 PE=4 SV=1	[more]

BLAST of CSPI07G21770.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G21770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190178\|gb\|KGN45411.1\|	3.2e-27	72.83	hypothetical protein Csa_7G447730 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G21770	CSPI07G21770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G21770.1	CSPI07G21770.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G21770.1.cds1	CSPI07G21770.1.cds1	CDS
CSPI07G21770.1.cds2	CSPI07G21770.1.cds2	CDS