CSPI07G21770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G21770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 18536030 .. 18536614 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAACAGTATCAAGTAAACGGTCCTAACAGGTGAAGGCAAATCAATGAATTATCATATGGTTTATATTCTCCTCTGCACGTCAACAGTTTTTGGTTTGCAGAGTAATAAACCTCCATCGATACTGAAATCAATGGGCAGGTAGGAAGATGAGCAAAATCCAGCGATGTGATTCTATTTCATTTAAACCAATGTGATATAGGTATCAGGGCTAAAAAACTTTTTTTTTTCAAACCCTAGTTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG

mRNA sequence

ATGCCAAACAGTATCAATTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG

Coding sequence (CDS)

ATGCCAAACAGTATCAATTTTAACTTAGAGCATCAGACCCTGGCTGCCTCACCTAGCCAGCGCCGATGGAAACCGACCGGAACTCTAGCTACCGTCTTTAACAGCACACAATACCTCCGGCGTGTTTGTGGTCGAAGTATCTATTCCTGCCTGTCAGATCACCCTTTAGTCCACCCCACCCGTCGACTTGGAAGTCCGTTTTGTAGTCGTGTTTGGCGACATTGTTCGCTGGCTTTGTTCGCGCTTGAAGTCCGTTCGCGGTTGTTCGGCGGGGTTGTGGCAAAGATCTGTATTTTGCGAGGGGATGGAGATGAAAATGGGAAGAGAGTGGAGGGAGTGAGTGAGGGAGTGGAAGTGTAG
Homology
[Close]
BLAST of CSPI07G21770 vs. TrEMBL
Match: A0A0A0KC93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447730 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 6  NFNLEHQTLAASPSQRRWKPTGTLATVFNSTQYLRRVCGRSIYSCLSDHPLVHPTRRLGS 65
          +FNLEHQTLAASPSQRRWKPTGTLATVFNS QYLRRVCGRSIYSCLSDHPLVHP RRLGS
Sbjct: 3  SFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRLGS 62

Query: 66 PF-----------CSRV--WRHCSLALFALEV 85
          PF           CSR+   R CS  L+   V
Sbjct: 63 PFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV 94

[Close]
BLAST of CSPI07G21770 vs. NCBI nr
Match: gi|700190178|gb|KGN45411.1| (hypothetical protein Csa_7G447730 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-27
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 6  NFNLEHQTLAASPSQRRWKPTGTLATVFNSTQYLRRVCGRSIYSCLSDHPLVHPTRRLGS 65
          +FNLEHQTLAASPSQRRWKPTGTLATVFNS QYLRRVCGRSIYSCLSDHPLVHP RRLGS
Sbjct: 3  SFNLEHQTLAASPSQRRWKPTGTLATVFNSRQYLRRVCGRSIYSCLSDHPLVHPNRRLGS 62

Query: 66 PF-----------CSRV--WRHCSLALFALEV 85
          PF           CSR+   R CS  L+   V
Sbjct: 63 PFVVVFGDIVRWLCSRLKSVRGCSAGLWQRSV 94

The following BLAST results are available for this feature:
BLAST of CSPI07G21770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G21770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC93_CUCSA2.2e-2772.83Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447730 PE=4 SV=1[more]
BLAST of CSPI07G21770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G21770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190178|gb|KGN45411.1|3.2e-2772.83hypothetical protein Csa_7G447730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G21770.1CSPI07G21770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G21770Csa7G447730Cucumber (Chinese Long) v2cpicuB354
CSPI07G21770CsaV3_7G033670Cucumber (Chinese Long) v3cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G21770Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G21770Melon (DHL92) v3.6.1cpimedB512
CSPI07G21770Cucumber (Gy14) v2cgybcpiB331
CSPI07G21770Silver-seed gourdcarcpiB0638
CSPI07G21770Silver-seed gourdcarcpiB0805
CSPI07G21770Watermelon (97103) v2cpiwmbB596
CSPI07G21770Wax gourdcpiwgoB702
CSPI07G21770Cucumber (Gy14) v1cgycpiB535
CSPI07G21770Cucurbita maxima (Rimu)cmacpiB387
CSPI07G21770Cucurbita maxima (Rimu)cmacpiB939
CSPI07G21770Cucurbita moschata (Rifu)cmocpiB376
CSPI07G21770Cucurbita moschata (Rifu)cmocpiB918
CSPI07G21770Melon (DHL92) v3.5.1cpimeB525
CSPI07G21770Watermelon (Charleston Gray)cpiwcgB553
CSPI07G21770Watermelon (97103) v1cpiwmB585
CSPI07G21770Cucurbita pepo (Zucchini)cpecpiB158
CSPI07G21770Cucurbita pepo (Zucchini)cpecpiB337