CSPI07G17740.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G17740.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 15967774 .. 15968178 (-)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

mRNA sequence

ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Coding sequence (CDS)

ATGGCTGCGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA
Homology
[Close]
BLAST of CSPI07G17740.1 vs. TrEMBL
Match: A0A0A0K668_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399270 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1 

Query: 1   MAAARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MA ARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

[Close]
BLAST of CSPI07G17740.1 vs. NCBI nr
Match: gi|700189735|gb|KGN44968.1| (hypothetical protein Csa_7G399270 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1 

Query: 1   MAAARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MA ARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

The following BLAST results are available for this feature:
BLAST of CSPI07G17740.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G17740.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K668_CUCSA1.1e-6799.25Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399270 PE=4 SV=1[more]
BLAST of CSPI07G17740.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G17740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189735|gb|KGN44968.1|1.6e-6799.25hypothetical protein Csa_7G399270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G17740CSPI07G17740gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G17740.1CSPI07G17740.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G17740.1.cds1CSPI07G17740.1.cds1CDS