CSPI07G17680.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G17680.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 15951683 .. 15953015 (+)
Sequence length516
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGCTCAGGCCAAAATAAACTATTTTCTCATATATATAAATTTAACCGGGGCTATTGAAAGGTTATTAATAGTTACTCGACTTTAAAATTGATTGCAAAAGGTTATTAATAGTTATTCGACTTTTAAATTGGTTGCTTTTGCAATTTAGAAAATGTTTTGACATATCGTCTATGAATTTAGAACAAACAATGTGTTTTGGAACAAAATCATAATGTTGTTGGGACACAGAAAGTATTGTGTGAGCCAAAAATCTTTTGATTCAATTAAGACAAATATTGAGTTTGAATAGTGGGTTGGAATTAGGCAATACAATATATAGCCTTAAGTTGCTAATGTTGAGCATTGAAAGCTCCATGAGAAAAAACGCTACCGCTAACGGTGCTTGTAGTTTGGTGATGAGTATGAACAACAACGCTACTGCTGCCACTTGTGTGAATACCATCAGCCCCCTTTGTAGTTTGGATATTGTTAGAAGAAAAAAAGCTTTTGCTGCTTCTATGATTAGTATGGATTCCATGAGAAAATAAACCAGCACCACCACGAATCATGGCAGCTCCATGTCCATGAGAAACAACAGTACTGGTGGCGCTCTTCACTCTAGTTTCCTGACCGCTGGCCACGACGACACTCCTGCTCCCCCTGTTCGCACCGATTTTGCCTTTATGAGAAATGACAACACTGCTGCCACTCTTTGCACTTACTTCGTGACCGGTAGATACAGCAACAGTACTACTGCCTCCATTCACACCGGTCTTGGAACCACGGGAAACAATGATGCTGCTGCTACCCTTCTTCGTGATTTCTTGACCTTGAGAAACTGCAACCAAACTACTACTGCCGTTGTTCACACCGGTTTTGCCACCATGAGAAACAATAACACTACTAGCACCACTCTTCTTGCTAATTTCATGACCACTAGAAATCGCAACGACACTTCCGCGGTTGGCGTTCGGACCAGTTTTTCTACCATGAGAAACGACAACACTACCGGCACTTTTTGCCGTGCTAATTTCATGACCTTGAGAAACAACAAGAACTTTTCCACCGACACTGCTCACAGGTGCGACCGCTGATGCTTGTGTGCCGTGTGATCCAAAGGCACGGATGGGTAATTTACGATCGAGAGCGGGTTCTACGCTACCAGTGACGTCACCGAAGGTGGCACCCACCTTCCCACAGCATTGCCAAGCAAGCACTAAGAAAAGGGTGTGAAAGAGCTTGAAACCATTTGGTGCCATTTCCATGGTAGAAATGGTGTGATTAGTTGAAATTATTGTAGGTTTACAAGCTCTTTTCACAAAATGCGAAGGGGAAGTATGAGTGCCTTGGAT

mRNA sequence

ATGTCCATGAGAAACAACAGTACTGGTGGCGCTCTTCACTCTAGTTTCCTGACCGCTGGCCACGACGACACTCCTGCTCCCCCTGTTCGCACCGATTTTGCCTTTATGAGAAATGACAACACTGCTGCCACTCTTTGCACTTACTTCGTGACCGGTAGATACAGCAACAGTACTACTGCCTCCATTCACACCGGTCTTGGAACCACGGGAAACAATGATGCTGCTGCTACCCTTCTTCGTGATTTCTTGACCTTGAGAAACTGCAACCAAACTACTACTGCCGTTGTTCACACCGGTTTTGCCACCATGAGAAACAATAACACTACTAGCACCACTCTTCTTGCTAATTTCATGACCACTAGAAATCGCAACGACACTTCCGCGGTTGGCGTTCGGACCAGTTTTTCTACCATGAGAAACGACAACACTACCGGCACTTTTTGCCGTGCTAATTTCATGACCTTGAGAAACAACAAGAACTTTTCCACCGACACTGCTCACAGGTGCGACCGCTGA

Coding sequence (CDS)

ATGTCCATGAGAAACAACAGTACTGGTGGCGCTCTTCACTCTAGTTTCCTGACCGCTGGCCACGACGACACTCCTGCTCCCCCTGTTCGCACCGATTTTGCCTTTATGAGAAATGACAACACTGCTGCCACTCTTTGCACTTACTTCGTGACCGGTAGATACAGCAACAGTACTACTGCCTCCATTCACACCGGTCTTGGAACCACGGGAAACAATGATGCTGCTGCTACCCTTCTTCGTGATTTCTTGACCTTGAGAAACTGCAACCAAACTACTACTGCCGTTGTTCACACCGGTTTTGCCACCATGAGAAACAATAACACTACTAGCACCACTCTTCTTGCTAATTTCATGACCACTAGAAATCGCAACGACACTTCCGCGGTTGGCGTTCGGACCAGTTTTTCTACCATGAGAAACGACAACACTACCGGCACTTTTTGCCGTGCTAATTTCATGACCTTGAGAAACAACAAGAACTTTTCCACCGACACTGCTCACAGGTGCGACCGCTGA
Homology
[Close]
BLAST of CSPI07G17680.1 vs. TrEMBL
Match: A0A0A0K7V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398745 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-87
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1 

Query: 1   MSMRNNSTGGALHSSFLTAGHDDTPAPPVRTDFAFMRNDNTAATLCTYFVTGRYSNSTTA 60
           MSMRNNSTGGALHSSFLTAGHDDTPAPPV TDFAFMRNDNTAATLCTYFVTGRYSNSTTA
Sbjct: 1   MSMRNNSTGGALHSSFLTAGHDDTPAPPVGTDFAFMRNDNTAATLCTYFVTGRYSNSTTA 60

Query: 61  SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT 120
           SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT
Sbjct: 61  SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT 120

Query: 121 RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR 172
           RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR
Sbjct: 121 RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR 171

[Close]
BLAST of CSPI07G17680.1 vs. NCBI nr
Match: gi|700189731|gb|KGN44964.1| (hypothetical protein Csa_7G398745 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.7e-87
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 1 

Query: 1   MSMRNNSTGGALHSSFLTAGHDDTPAPPVRTDFAFMRNDNTAATLCTYFVTGRYSNSTTA 60
           MSMRNNSTGGALHSSFLTAGHDDTPAPPV TDFAFMRNDNTAATLCTYFVTGRYSNSTTA
Sbjct: 1   MSMRNNSTGGALHSSFLTAGHDDTPAPPVGTDFAFMRNDNTAATLCTYFVTGRYSNSTTA 60

Query: 61  SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT 120
           SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT
Sbjct: 61  SIHTGLGTTGNNDAAATLLRDFLTLRNCNQTTTAVVHTGFATMRNNNTTSTTLLANFMTT 120

Query: 121 RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR 172
           RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR
Sbjct: 121 RNRNDTSAVGVRTSFSTMRNDNTTGTFCRANFMTLRNNKNFSTDTAHRCDR 171

The following BLAST results are available for this feature:
BLAST of CSPI07G17680.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G17680.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7V9_CUCSA4.7e-8799.42Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398745 PE=4 SV=1[more]
BLAST of CSPI07G17680.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G17680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189731|gb|KGN44964.1|6.7e-8799.42hypothetical protein Csa_7G398745 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G17680CSPI07G17680gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G17680.1CSPI07G17680.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G17680.1.utr5p1CSPI07G17680.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G17680.1.cds1CSPI07G17680.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G17680.1.utr3p1CSPI07G17680.1.utr3p1three_prime_UTR